to_be_discarded = []
discard_st = kb.get_study(args.discard_study)
if discard_st is None:
logger.critical('Study with label %s not found!' % args.discard_study)
sys.exit(2)
for c in codes:
try:
src_st_lookup[c].study = discard_st
to_be_discarded.append(src_st_lookup[c])
except KeyError:
logger.warning('Enrollment %s not found in study %s' %
(c, args.source_study))
logger.info('%d enrollments will be discarded' % len(to_be_discarded))
for disc in to_be_discarded:
try:
kb.save(disc)
except KBError:
logger.error('Can\'t save enrollment %s in study %s' %
(disc.studyCode, disct.study.label))
continue
disc_well = mark_invalid_well(disc, kb)
if disc_well:
kb.save(disc_well)
pass
if __name__ == '__main__':
main(sys.argv[1:])
to_be_discarded = []
discard_st = kb.get_study(args.discard_study)
if discard_st is None:
logger.critical('Study with label %s not found!' % args.discard_study)
sys.exit(2)
for c in codes:
try:
src_st_lookup[c].study = discard_st
to_be_discarded.append(src_st_lookup[c])
except KeyError:
logger.warning('Enrollment %s not found in study %s' % (c, args.source_study))
logger.info('%d enrollments will be discarded' % len(to_be_discarded))
for disc in to_be_discarded:
try:
kb.save(disc)
except KBError:
logger.error('Can\'t save enrollment %s in study %s' % (disc.studyCode,
disct.study.label))
continue
disc_well = mark_invalid_well(disc, kb)
if disc_well:
kb.save(disc_well)
pass
if __name__ == '__main__':
main(sys.argv[1:])
