class WalkoffSignal(object):
"""A signal to send Walkoff data
The class is a wrapper around a blinker.Signal
Attributes:
name (str): The name of the signal
signal (Signal): The signal object which sends the event and data
event_type (EventType): The event type of this signal
is_sent_to_interfaces (bool, optional): Should this event get sent to the interface dispatcher? Defaults to True
message (str): Human readable message for this event
Args:
name (str): The name of the signal
event_type (EventType): The event type of this signal
send_to_interfaces (bool, optional): Should this event get sent to the interface dispatcher? Defaults to True
message (str, optional): Human readable message for this event. Defaults to empty string
"""
_signals = {}
def __init__(self, name, event_type, send_to_interfaces=True, message=''):
self.name = name
self.signal = Signal(name)
self.event_type = event_type
self.is_sent_to_interfaces = send_to_interfaces
self.message = message
def send(self, sender, **kwargs):
"""Sends the signal with data
Args:
sender: The thing that is sending the signal
Kwargs:
data: Additional data to send with the signal
"""
self.signal.send(sender, **kwargs)
def connect(self, func, weak=True):
"""A decorator which registers a function as a callback for this signal
Args:
func (func): The function to register
weak (bool, optional): Should a weak reference be used for this connection? Defaults to True
Returns:
func: The function connected
"""
self.signal.connect(func)
if not weak:
WalkoffSignal._store_callback(func)
return func
@classmethod
def _store_callback(cls, func):
"""
Stores callbacks so they aren't garbage collected and the weak references of the signals disappear
"""
cls._signals[id(func)] = func
def test_temp_connection_for_sender():
sig = Signal()
canary = []
receiver = lambda sender: canary.append(sender)
with sig.connected_to(receiver, sender=2):
sig.send(1)
sig.send(2)
assert canary == [2]
assert not sig.receivers
class Foo:
def __init__(self):
self.on_hit = Signal()
self.on_hit.connect(self.handle_hit)
self.on_hit.connect(self.handle_again)
def handle_hit(self, *args):
print('hit!', self, args)
def handle_again(self, *args):
print('hit again!', self, args)
def __init__(self, new_func=None, total_count=None, *args, **kwargs):
self.func = new_func
self.total_count = total_count
self.count = 0
self.task_queue = []
self.process_list = []
self.process_map = {}
self.task_map = {}
self.args = args
self.kwargs = kwargs
signal.signal(signal.SIGWINCH, self.action)
# self.window = curses.initscr()
self.add_task_signal = Signal(1000)
self.count_signal = Signal(1001)
self.reg_task_signal()
self.reg_count_sinal()
def __init__(self,
username,
password,
account_id,
auth_token=None,
user_directory='mpx',
region='US1',
service_registry=None,
token_duration=43200000, # 12 hours
token_idle_timeout=14400000, # 4 hours
use_ssl=True,
):
self.username = username
self.password = password
self.account = account_id
self.auth_token = auth_token
self.user_directory = user_directory
self.region = region
self.token_duration = token_duration
self.token_idle_timeout = token_idle_timeout
self.use_ssl = use_ssl
self.registry_url = REGISTRY_URL.format(tld=self.regional_tld)
self.signin_url = SIGN_IN_URL.format(tld=self.regional_tld)
self.post_sign_in = Signal()
self._registry = service_registry
self.session = requests.Session()
self.session.mount('https://', TLS1Adapter())
self.session.headers.update({
'Content-Type': 'application/json',
'Accept': 'application/json',
'User-Agent': 'Python Mediaamp %s' % __version__,
})
def test_temp_connection_alias():
sig = Signal()
canary = []
receiver = lambda sender: canary.append(sender)
sig.send(1)
with sig.temporarily_connected_to(receiver):
sig.send(2)
sig.send(3)
assert canary == [2]
assert not sig.receivers
class EventService(Service):
def __init__(self, env):
"""event service"""
super(EventService, self).__init__(env)
self._channel = Signal('event_channel')
def subscribe(self, func, event_type=None ):
'''
:param func: def func(event_type, **kwarg):
pass
:param event_filter: option
:return:
'''
# sender = event_type or ANY
# weak = True
# if isinstance(event_type, basestring):
# weak = False
# self._channel.connect(func, sender, weak)
sender = event_type or ANY
self._channel.connect(func, sender)
def unsubscribe(self, func):
self._channel.disconnect(func)
def publish(self, event_type, **kwarg):
self._channel.send(event_type, **kwarg)
def __init__(self, inverted = False, scale={}):
self.inverted = inverted
self.scale = scale
self.position = None
self.running = None
self.initializing = None
self.initialized = None
self.initiator_minus = None
self.initiator_plus = None
self.initiator_error = None
self.temperature_warning = None
self.onPosition = Signal()
self.onStarted = Signal()
self.onStopped = Signal()
self.onInitializing = Signal()
self.onInitialized = Signal()
self.onInitiatorMinus = Signal()
self.onInitiatorPlus = Signal()
self.onInitiatorError = Signal()
self.onTemperatureWarning = Signal()
def __init__(self, axes, constraints = None): import Queue self.axes = axes self.constraints = constraints self.action_queue = Queue.Queue() self.abort_action = NullAction() self.onCycleStarted = Signal() self.onCycleFinished = Signal() self.onCycleAborted = Signal() self.active = False self.target = None
class MailboxesAccountItem(NSObject):
def init(self):
self = super(MailboxesAccountItem, self).init()
self.folder_items = []
self.updated = Signal()
return self
@classmethod
def newBlank(cls):
return cls.alloc().init()
@classmethod
def newWithAccount_(cls, account):
self = cls.alloc().init()
self.account = account
account_updated.connect(objc_callback(self.folders_updated), account)
self.folders_updated(account)
return self
def folders_updated(self, account):
self.folder_items[:] = [MailboxesFolderItem.newWithFolder_(f)
for n, f in sorted(account._folders.items())]
self.updated.send(self)
def test_temp_connection_failure():
sig = Signal()
canary = []
receiver = lambda sender: canary.append(sender)
class Failure(Exception):
pass
try:
sig.send(1)
with sig.connected_to(receiver):
sig.send(2)
raise Failure
sig.send(3)
except Failure:
pass
else:
raise AssertionError("Context manager did not propagate.")
assert canary == [2]
assert not sig.receivers
def __init__(self, axes, constraints = None): from Action import EmergencyStop from blinker import Signal self.axes_idx = dict() for i, axis in enumerate(axes): self.axes_idx[axis] = i self.axes = [axis for axis in axes] self.constraints = constraints self.abort_action = EmergencyStop(self.axes) self.onCycleStarted = Signal() self.onCycleFinished = Signal() self.onCycleAborted = Signal() self.onDestinationChanged = Signal() self.onRunning = Signal() self.onInitializing = Signal() self.onInitialized = Signal() self.onInitiatorMinus = Signal() self.onInitiatorPlus = Signal() self.onPositionChanged = Signal() for axis in self.axes: axis.onInitializing.connect(self.onInitializing_repeat) axis.onInitialized.connect(self.onInitialized_repeat) axis.onInitiatorMinus.connect(self.onInitiatorMinus_repeat) axis.onInitiatorPlus.connect(self.onInitiatorPlus_repeat) axis.onRunning.connect(self.onRunning_repeat) axis.onPosition.connect(self.onPosition_repeat) self.worker_thread = None self.active = False self.destination = None self.cycle_clear() self.update()
def __init__(self, env):
"""event service"""
super(EventService, self).__init__(env)
self._channel = Signal('event_channel')
# -*- coding: utf-8 -*-
import logging
import time
from loki.node.nodes import TreeNode
import requests
import ujson as json
import gevent
from blinker import Signal
from loki.app import mail, settings
from loki.mail import Message
from loki.job.statuses import Status
from loki.utils import catch_exception
# for deployment
on_status_changed = Signal()
logger = logging.getLogger("signals.deploy")
SLACK_WEB_HOOK = "http://slack-proxy.hy01.internal.nosa.me/post"
@on_status_changed.connect
@catch_exception(logger)
def send_mail(sender, operator=None, **kwargs):
"""
:param sender: job.models.Deployment
"""
logger.debug("catch status changed signal for send_mail")
status = Status(sender.status).name \
if sender.status != Status.unknown \
def __init__(self, conf, conf_base_path=None):
Synchronizable.__init__(self)
self._global_conf = conf
self._expanded_global_conf = conf.clone().expand_vars()
self._conf = self._expanded_global_conf.get("wok", default=Data.element)
self._conf_base_path = conf_base_path
self._log = logger.get_logger("wok.engine")
self._work_path = self._conf.get("work_path", os.path.join(os.getcwd(), "wok-files"))
if not os.path.exists(self._work_path):
os.makedirs(self._work_path)
self._cases = []
self._cases_by_name = {}
self._stopping_cases = {}
#self._lock = Lock()
self._cvar = threading.Condition(self._lock)
self._run_thread = None
self._running = False
self._finished_event = threading.Event()
self._job_task_map = {}
self._logs_threads = []
self._logs_queue = Queue()
self._join_thread = None
self._join_queue = Queue()
self._num_log_threads = self._conf.get("num_log_threads", cpu_count())
self._max_alive_threads = 2 + self._num_log_threads
self._num_alive_threads = AtomicCounter()
self._started = False
self._notified = False
recover = self._conf.get("recover", False)
db_path = os.path.join(self._work_path, "engine.db")
if not recover and os.path.exists(db_path):
os.remove(db_path)
self._db = db.create_engine("sqlite:///{}".format(db_path), drop_tables=not recover)
# platforms
self._platforms = self._create_platforms()
self._platforms_by_name = {}
for platform in self._platforms:
self._platforms_by_name[platform.name] = platform
default_platform_name = self._conf.get("default_platform", self._platforms[0].name)
if default_platform_name not in self._platforms_by_name:
self._log.warn("Platform '{}' not found, using '{}' as the default platform".format(
default_platform_name, self._platforms[0].name))
default_platform_name = self._platforms[0].name
self._default_platform = self._platforms_by_name[default_platform_name]
# projects
if conf_base_path is None:
conf_base_path = os.getcwd()
projects_conf = self._global_conf.get("wok.projects")
self._projects = ProjectManager(projects_conf, base_path=conf_base_path)
self._projects.initialize()
# signals
self.case_created = Signal()
self.case_state_changed = Signal()
self.case_started = Signal()
self.case_finished = Signal()
self.case_removed = Signal()
# recovering
if recover:
self.__recover_from_db()
def __init__(
self,
session_id: str,
session_data: SessionData,
enqueue_forward_msg: Callable[[ForwardMsg], None],
client_state: ClientState,
request_queue: ScriptRequestQueue,
session_state: SessionState,
uploaded_file_mgr: UploadedFileManager,
):
"""Initialize the ScriptRunner.
(The ScriptRunner won't start executing until start() is called.)
Parameters
----------
session_id : str
The AppSession's id.
session_data : SessionData
The AppSession's session data.
enqueue_forward_msg : Callable
Function to call to send a ForwardMsg to the frontend.
(When not running a unit test, this will be the enqueue function
of the AppSession instance that created this ScriptRunner.)
client_state : ClientState
The current state from the client (widgets and query params).
request_queue : ScriptRequestQueue
The queue that the AppSession is publishing ScriptRequests to.
ScriptRunner will continue running until the queue is empty,
and then shut down.
uploaded_file_mgr : UploadedFileManager
The File manager to store the data uploaded by the file_uploader widget.
"""
self._session_id = session_id
self._session_data = session_data
self._enqueue_forward_msg = enqueue_forward_msg
self._request_queue = request_queue
self._uploaded_file_mgr = uploaded_file_mgr
self._client_state = client_state
self._session_state: SessionState = session_state
self._session_state.set_widgets_from_proto(client_state.widget_states)
self.on_event = Signal(doc="""Emitted when a ScriptRunnerEvent occurs.
This signal is *not* emitted on the same thread that the
ScriptRunner was created on.
Parameters
----------
event : ScriptRunnerEvent
exception : BaseException | None
Our compile error. Set only for the
SCRIPT_STOPPED_WITH_COMPILE_ERROR event.
widget_states : streamlit.proto.WidgetStates_pb2.WidgetStates | None
The ScriptRunner's final WidgetStates. Set only for the
SHUTDOWN event.
""")
# Set to true when we process a SHUTDOWN request
self._shutdown_requested = False
# Set to true while we're executing. Used by
# _maybe_handle_execution_control_request.
self._execing = False
# This is initialized in start()
self._script_thread: Optional[threading.Thread] = None
class MotionControl(object): def __init__(self, axes, constraints = None): import Queue self.axes = axes self.constraints = constraints self.action_queue = Queue.Queue() self.abort_action = NullAction() self.onCycleStarted = Signal() self.onCycleFinished = Signal() self.onCycleAborted = Signal() self.active = False self.target = None def __del__(self): self.abort() def __getattr__(self, name): if name == 'position': return [axis.position for axis in self.axes] def update(self): for axis in self.axes: axis.update() def set_target(self, target): if isinstance(target, list): if len(target) != len(self.axes): raise ValueError self.target = target if isinstance(target, dict): for k,v in target: self.target[k] = v if isinstance(target, tuple): self.target[target[0]] = target[1] speed = None current_position = self.position if not None in current_position: delta = [abs(a-b) for a,b in zip(target, current_position)] max_delta = max(delta) speed = [float(d)/float(max_delta) for d in delta] self.action_queue = Queue.Queue() self.action_queue.put(GotoAbsolute(self.axes, self.target, speed)) def can_cycle_start(self): if self.active: return False return True # FIXME: Add constraint tests here def start_cycle(self): import threading, weakref if not self.can_cycle_start(): return False self.current_action = None self.active = True self.worker_thread = threading.Thread(target = MotionControl.cycle_worker, name = "MotionControl.worker", args=(weakref.proxy(self),)) self.worker_thread.daemon =True self.worker_thread.start() self.onCycleStarted.send() def abort(self): self.active = False self.worker_thread.join() def __del__(self): self.abort() def cycle_worker(ref): abort_action = ref.abort_action try: import time while True: if not ref.active: raise CycleAbort() ref.update() if not ref.current_action or ref.current_action.ended(): if ref.action_queue.empty(): break ref.current_action = ref.action_queue.get_nowait() ref.current_action.execute() while True: if not ref.active: raise CycleAbort() ref.update() if ref.current_action.ended(): break ref.action_queue.task_done() ref.onCycleFinished.send() except CycleAbort: ref.abort_action.execute() ref.onCycleAborted.send() finally: try: while not ref.action_queue.empty(): ref.action_queue.get_nowait() ref.action_queue.task_done() except: pass ref.active = False
try:
return int(v)
except Exception:
pass
try:
return float(v)
except Exception:
pass
return v
# Allow outside modules to wait for the config file to be parsed before doing
# something.
_on_config_parsed = Signal(doc="Emitted when the config file is parsed.")
CONFIG_FILENAMES = [
file_util.get_streamlit_file_path("config.toml"),
file_util.get_project_streamlit_file_path("config.toml"),
]
def get_config_options(
force_reparse=False,
options_from_flags: Optional[Dict[str, Any]] = None
) -> Dict[str, ConfigOption]:
"""Create and return a dict mapping config option names to their values,
returning a cached dict if possible.
Config option values are sourced from the following locations. Values
class compound(NodeBase):
"""this node encapsulates a graph, like compound in xsi
pins can be edited only from inside the compound
"""
def __init__(self, name):
super(compound, self).__init__(name)
self.isCompoundNode = True
self.pinExposed = Signal(object)
self._rawGraph = None
self.__inputsMap = {}
self.__outputsMap = {}
self.bCacheEnabled = False
@property
def inputsMap(self):
return self.__inputsMap
@property
def outputsMap(self):
return self.__outputsMap
@property
def rawGraph(self):
return self._rawGraph
@rawGraph.setter
def rawGraph(self, newGraph):
assert (newGraph is not None)
self._rawGraph = newGraph
def syncPins(self):
# look for graph nodes pins was added
nodeInputPins = self.namePinInputsMap
nodeOutputPins = self.namePinOutputsMap
graphInputsNodes = self.rawGraph.getNodes(
classNameFilters=['graphInputs'])
graphInputPins = {}
for graphInputNode in graphInputsNodes:
for outPin in graphInputNode.outputs.values():
graphInputPins[outPin.name] = outPin
# create companion pin if needed
if outPin.name not in nodeInputPins:
self.onGraphInputPinCreated(outPin)
graphOutputNodes = self.rawGraph.getNodes(
classNameFilters=['graphOutputs'])
graphOutputPins = {}
for graphOutputNode in graphOutputNodes:
for inPin in graphOutputNode.inputs.values():
graphOutputPins[inPin.name] = inPin
# create companion pin if needed
if inPin.name not in nodeOutputPins:
self.onGraphOutputPinCreated(inPin)
for nodeInputPinName, nodeInputPin in nodeInputPins.items():
if nodeInputPinName not in graphInputPins:
if nodeInputPin in self.__inputsMap:
nodeInputPin.kill()
clearSignal(nodeInputPin.killed)
self.__inputsMap.pop(nodeInputPin)
for nodeOutputPinName, nodeOutputPin in nodeOutputPins.items():
if nodeOutputPinName not in graphOutputPins:
if nodeOutputPin in self.__outputsMap:
nodeOutputPin.kill()
clearSignal(nodeOutputPin.killed)
self.__outputsMap.pop(nodeOutputPin)
def Tick(self, delta):
self.syncPins()
self.rawGraph.Tick(delta)
super(compound, self).Tick(delta)
def setName(self, name):
super(compound, self).setName(name)
if self.rawGraph is not None:
self.rawGraph.name = self.getName()
@staticmethod
def pinTypeHints():
return {'inputs': [], 'outputs': []}
@staticmethod
def category():
return 'Common'
@staticmethod
def keywords():
return []
@staticmethod
def description():
return 'Encapsulate a graph inside a node'
def serialize(self):
default = NodeBase.serialize(self)
default['graphData'] = self.rawGraph.serialize()
return default
def onGraphInputPinCreated(self, outPin):
"""Reaction when pin added to graphInputs node
Arguments:
outPin {PinBase} -- output pin on graphInputs node
"""
# add companion pin for graphInputs node's output pin
subgraphInputPin = self.createInputPin(outPin.name,
outPin.__class__.__name__,
outPin.defaultValue(),
outPin.call,
outPin.structureType,
outPin.constraint,
outPin.structConstraint,
group=outPin.owningNode().name)
if subgraphInputPin.isAny():
subgraphInputPin.supportedDataTypes = outPin.supportedDataTypes
#subgraphInputPin.singleInit = True
subgraphInputPin.setType(outPin.dataType)
outPin.owningNode().constraints[outPin.constraint].append(
subgraphInputPin)
self.constraints[outPin.constraint].append(outPin)
outPin.owningNode().structConstraints[outPin.structConstraint].append(
subgraphInputPin)
self.structConstraints[outPin.structConstraint].append(outPin)
self.__inputsMap[subgraphInputPin] = outPin
pinAffects(subgraphInputPin, outPin)
# connect
def forceRename(name):
subgraphInputPin.setName(name, force=True)
outPin.nameChanged.connect(forceRename, weak=False)
# broadcast for UI wrapper class
self.pinExposed.send(subgraphInputPin)
def onGraphOutputPinCreated(self, inPin):
"""Reaction when pin added to graphOutputs node
Arguments:
inPin {PinBase} -- input pin on graphOutputs node
"""
# add companion pin for graphOutputs node's input pin
subgraphOutputPin = self.createOutputPin(inPin.name,
inPin.__class__.__name__,
inPin.defaultValue(),
inPin.structureType,
inPin.constraint,
inPin.structConstraint,
group=inPin.owningNode().name)
if subgraphOutputPin.isAny():
subgraphOutputPin.supportedDataTypes = inPin.supportedDataTypes
subgraphOutputPin.setType(inPin.dataType)
if subgraphOutputPin.isExec():
inPin.onExecute.connect(subgraphOutputPin.call)
inPin.owningNode().constraints[inPin.constraint].append(
subgraphOutputPin)
self.constraints[inPin.constraint].append(inPin)
inPin.owningNode().structConstraints[inPin.structConstraint].append(
subgraphOutputPin)
self.structConstraints[inPin.structConstraint].append(inPin)
self.__outputsMap[subgraphOutputPin] = inPin
pinAffects(inPin, subgraphOutputPin)
# connect
def forceRename(name):
subgraphOutputPin.setName(name, force=True)
inPin.nameChanged.connect(forceRename, weak=False)
# broadcast for UI wrapper class
self.pinExposed.send(subgraphOutputPin)
def kill(self, *args, **kwargs):
self.rawGraph.remove()
super(compound, self).kill(*args, **kwargs)
def postCreate(self, jsonTemplate=None):
super(compound, self).postCreate(jsonTemplate=jsonTemplate)
if jsonTemplate is not None and 'graphData' in jsonTemplate:
parentGraph = self.graph().graphManager.findGraph(
jsonTemplate['owningGraphName'])
self.rawGraph = GraphBase(self.name,
self.graph().graphManager, parentGraph)
# recreate graph contents
jsonTemplate['graphData']['name'] = self.getName()
self.rawGraph.populateFromJson(jsonTemplate['graphData'])
self.syncPins()
inputsMap = self.namePinInputsMap
for inpJson in jsonTemplate['inputs']:
inputsMap[inpJson['name']].uid = uuid.UUID(inpJson['uuid'])
outputsMap = self.namePinOutputsMap
for outJson in jsonTemplate['outputs']:
outputsMap[outJson['name']].uid = uuid.UUID(outJson['uuid'])
else:
self.rawGraph = GraphBase(self.name,
self.graph().graphManager,
self.graph().graphManager.activeGraph())
def addNode(self, node):
self.rawGraph.addNode(node)
def autoAffectPins(self):
pass
def compute(self, *args, **kwargs):
# put data from inner graph pins to outer compound node output companions
for outputPin, innerPin in self.__outputsMap.items():
outputPin.setData(innerPin.getData())
""" weitersager.signals ~~~~~~~~~~~~~~~~~~~ Signals :Copyright: 2007-2022 Jochen Kupperschmidt :License: MIT, see LICENSE for details. """ from blinker import Signal irc_channel_joined = Signal() message_received = Signal()
def __init__(self, md5, modification_time):
self.md5 = md5
self.modification_time = modification_time
self.on_file_changed = Signal()
class Reuse(db.Datetimed, WithMetrics, BadgeMixin, db.Owned, db.Document):
title = db.StringField(required=True)
slug = db.SlugField(
max_length=255, required=True, populate_from='title', update=True)
description = db.StringField(required=True)
type = db.StringField(required=True, choices=REUSE_TYPES.keys())
url = db.StringField(required=True)
urlhash = db.StringField(required=True, unique=True)
image_url = db.StringField()
image = db.ImageField(
fs=images, basename=default_image_basename, max_size=IMAGE_MAX_SIZE,
thumbnails=IMAGE_SIZES)
datasets = db.ListField(
db.ReferenceField('Dataset', reverse_delete_rule=db.PULL))
tags = db.TagListField()
# badges = db.ListField(db.EmbeddedDocumentField(ReuseBadge))
private = db.BooleanField()
ext = db.MapField(db.GenericEmbeddedDocumentField())
extras = db.ExtrasField()
featured = db.BooleanField()
deleted = db.DateTimeField()
def __unicode__(self):
return self.title or ''
__badges__ = {}
meta = {
'indexes': ['-created_at', 'urlhash'] + db.Owned.meta['indexes'],
'ordering': ['-created_at'],
'queryset_class': ReuseQuerySet,
}
before_save = Signal()
after_save = Signal()
on_create = Signal()
on_update = Signal()
before_delete = Signal()
after_delete = Signal()
on_delete = Signal()
verbose_name = _('reuse')
@classmethod
def pre_save(cls, sender, document, **kwargs):
# Emit before_save
cls.before_save.send(document)
@classmethod
def post_save(cls, sender, document, **kwargs):
cls.after_save.send(document)
if kwargs.get('created'):
cls.on_create.send(document)
else:
cls.on_update.send(document)
if document.deleted:
cls.on_delete.send(document)
def url_for(self, *args, **kwargs):
return url_for('reuses.show', reuse=self, *args, **kwargs)
display_url = property(url_for)
@property
def external_url(self):
return self.url_for(_external=True)
@property
def type_label(self):
return REUSE_TYPES[self.type]
def clean(self):
'''Auto populate urlhash from url'''
if not self.urlhash or 'url' in self._get_changed_fields():
self.urlhash = hash_url(self.url)
super(Reuse, self).clean()
@classmethod
def get(cls, id_or_slug):
obj = cls.objects(slug=id_or_slug).first()
return obj or cls.objects.get_or_404(id=id_or_slug)
@classmethod
def url_exists(cls, url):
urlhash = hash_url(url)
return cls.objects(urlhash=urlhash).count() > 0
@cached_property
def json_ld(self):
result = {
'@context': 'http://schema.org',
'@type': 'CreativeWork',
'alternateName': self.slug,
'dateCreated': self.created_at.isoformat(),
'dateModified': self.last_modified.isoformat(),
'url': url_for('reuses.show', reuse=self, _external=True),
'name': self.title,
'isBasedOnUrl': self.url,
}
if self.description:
result['description'] = mdstrip(self.description)
if self.organization:
author = self.organization.json_ld
elif self.owner:
author = self.owner.json_ld
else:
author = None
if author:
result['author'] = author
return result
def __init__(self):
self.on_hit = Signal()
self.on_hit.connect(self.handle_hit)
self.on_hit.connect(self.handle_again)
def __init__(
self,
report,
main_dg,
sidebar_dg,
widget_states,
request_queue,
uploaded_file_mgr=None,
):
"""Initialize the ScriptRunner.
(The ScriptRunner won't start executing until start() is called.)
Parameters
----------
report : Report
The ReportSession's report.
main_dg : DeltaGenerator
The ReportSession's main DeltaGenerator.
sidebar_dg : DeltaGenerator
The ReportSession's sidebar DeltaGenerator.
widget_states : streamlit.proto.Widget_pb2.WidgetStates
The ReportSession's current widget states
request_queue : ScriptRequestQueue
The queue that the ReportSession is publishing ScriptRequests to.
ScriptRunner will continue running until the queue is empty,
and then shut down.
uploaded_file_mgr : UploadedFileManager
The File manager to store the data uploaded by the file_uplpader widget.
"""
self._report = report
self._main_dg = main_dg
self._sidebar_dg = sidebar_dg
self._request_queue = request_queue
self._uploaded_file_mgr = uploaded_file_mgr
self._widgets = Widgets()
self._widgets.set_state(widget_states)
self.on_event = Signal(doc="""Emitted when a ScriptRunnerEvent occurs.
This signal is *not* emitted on the same thread that the
ScriptRunner was created on.
Parameters
----------
event : ScriptRunnerEvent
exception : BaseException | None
Our compile error. Set only for the
SCRIPT_STOPPED_WITH_COMPILE_ERROR event.
widget_states : streamlit.proto.Widget_pb2.WidgetStates | None
The ScriptRunner's final WidgetStates. Set only for the
SHUTDOWN event.
""")
# Set to true when we process a SHUTDOWN request
self._shutdown_requested = False
# Set to true while we're executing. Used by
# maybe_handle_execution_control_request.
self._execing = False
# This is initialized in start()
self._script_thread = None
class EditorHistory(object):
"""docstring for EditorHistory."""
def __init__(self, app):
self.statePushed = Signal(object)
self.stateRemoved = Signal(object)
self.stateSelected = Signal(object)
self.app = app
self.stack = list()
try:
self._capacity = int(ConfigManager().getPrefsValue(
"PREFS", "General/HistoryDepth"))
except:
self._capacity = 10
self.activeState = None
def getStack(self):
return self.stack
def count(self):
return len(self.stack)
@property
def capacity(self):
return self._capacity
@capacity.setter
def capacity(self, value):
self._capacity = value
if value < len(self.stack):
for i in range(len(self.stack) - value):
state = self.stack.pop()
self.stateRemoved.send(state)
def clear(self):
self.stack.clear()
def stateIndex(self, state):
if state in self.stack:
return self.stack.index(state)
return -1
@property
def currentIndex(self):
if self.activeState is not None:
return self.stateIndex(self.activeState)
return -1
def push(self, edState):
if self.currentIndex < self.count() - 1:
nextState = None
while True:
index = self.count() - 1
nextState = self.stack[index]
if nextState == self.activeState:
break
state = self.stack.pop()
self.stateRemoved.send(state)
self.stack.append(edState)
if len(self.stack) >= self.capacity:
poppedState = self.stack.pop(0)
self.stateRemoved.send(poppedState)
self.statePushed.send(edState)
self.activeState = edState
self.stateSelected.send(edState)
def selectState(self, state):
for st in self.stack:
if state == st:
self.app.loadFromData(st.editorState)
self.activeState = st
self.stateSelected.send(st)
break
def select(self, index):
index = clamp(index, 0, self.count() - 1)
if index == self.currentIndex:
return
if len(self.stack) == 0:
return
stateData = self.stack[index].editorState
self.app.loadFromData(stateData)
state = self.stack[index]
self.activeState = state
self.stateSelected.send(state)
def saveState(self, text):
self.push(_EditorState(text))
def undo(self):
if self.currentIndex > 0:
self.select(self.currentIndex - 1)
def redo(self):
self.select(self.currentIndex + 1)
class Session(object):
def __init__(self,
username,
password,
account_id,
auth_token=None,
user_directory='mpx',
region='US1',
service_registry=None,
token_duration=43200000, # 12 hours
token_idle_timeout=14400000, # 4 hours
use_ssl=True,
):
self.username = username
self.password = password
self.account = account_id
self.auth_token = auth_token
self.user_directory = user_directory
self.region = region
self.token_duration = token_duration
self.token_idle_timeout = token_idle_timeout
self.use_ssl = use_ssl
self.registry_url = REGISTRY_URL.format(tld=self.regional_tld)
self.signin_url = SIGN_IN_URL.format(tld=self.regional_tld)
self.post_sign_in = Signal()
self._registry = service_registry
self.session = requests.Session()
self.session.mount('https://', TLS1Adapter())
self.session.headers.update({
'Content-Type': 'application/json',
'Accept': 'application/json',
'User-Agent': 'Python Mediaamp %s' % __version__,
})
@property
def registry(self):
if self._registry is None:
self._registry = self.resolve_domain()
return self._registry
@property
def regional_tld(self):
return 'eu' if 'eu' in self.region.lower() else 'com'
@property
def signin_username(self):
return self.user_directory + '/' + self.username
def resolve_domain(self):
resp = self.get(self.registry_url, params={
'schema': '1.1',
'_accountId': self.account,
})
try:
return resp['resolveDomainResponse']
except KeyError:
raise MediaAmpError('Unexpected response loading registry.')
def sign_in(self):
self.auth_token = None
self.session.auth = HTTPBasicAuth(self.signin_username, self.password)
result = self.get(self.signin_url, is_signin_request=True, params={
'schema': '1.0',
'_duration': self.token_duration,
'_idleTimeout': self.token_idle_timeout,
})
try:
self.auth_token = result['signInResponse']['token']
except KeyError:
raise AuthenticationError('Could not retrieve token.')
self.post_sign_in.send(self)
def request_json(self, method, url, retry_sign_in=True, is_signin_request=False, **kwargs):
""" Requests JSON content from the supplied URL.
This is the primary function to be used to make requests to the MPX API.
Not only does it ensure that the body of the response can be encoded as
Python via JSON, it also wraps exceptions and will auto-login using
the supplied credentials when necessary (e.g. when a token expires).
This API is known to return 200 statuses for requests that fail. It's
their convention to include the HTTP response code in the body of
the JSON returned. This checks for that case and turns them into actual
exceptions.
"""
if self.auth_token is not None:
self.session.auth = HTTPBasicAuth('', self.auth_token)
elif not is_signin_request:
self.sign_in()
response = getattr(self.session, method)(url, **kwargs)
try:
response.raise_for_status()
except requests.HTTPError as e:
wrap_http_error(e)
try:
data = response.json() if response.text else {}
except ValueError:
raise MediaAmpError('Response body can not be read as JSON. ')
try:
raise_for_json_exception(data)
except InvalidTokenError:
if retry_sign_in:
self.sign_in()
return self.request_json(method, url, retry_sign_in=False, **kwargs)
else:
raise
return data
def get(self, url, **kwargs):
return self.request_json('get', url, **kwargs)
def put(self, url, **kwargs):
return self.request_json('put', url, **kwargs)
def post(self, url, **kwargs):
return self.request_json('post', url, **kwargs)
def delete(self, url, **kwargs):
return self.request_json('delete', url, **kwargs)
def __getitem__(self, key):
url = self.registry.get(key)
if url is None:
url = self.registry(key + ' read-only')
if url is None:
raise KeyError(key + ' not available.')
if self.use_ssl:
url = url.replace('http://', 'https://')
return services[key](self, url)
class Organization(WithMetrics, BadgeMixin, db.Datetimed, db.Document):
name = db.StringField(required=True)
acronym = db.StringField(max_length=128)
slug = db.SlugField(max_length=255,
required=True,
populate_from='name',
update=True)
description = db.StringField(required=True)
url = db.StringField()
image_url = db.StringField()
logo = db.ImageField(fs=avatars,
basename=default_image_basename,
max_size=LOGO_MAX_SIZE,
thumbnails=LOGO_SIZES)
members = db.ListField(db.EmbeddedDocumentField(Member))
teams = db.ListField(db.EmbeddedDocumentField(Team))
requests = db.ListField(db.EmbeddedDocumentField(MembershipRequest))
ext = db.MapField(db.GenericEmbeddedDocumentField())
zone = db.StringField()
extras = db.ExtrasField()
deleted = db.DateTimeField()
meta = {
'indexes': ['-created_at', 'slug'],
'ordering': ['-created_at'],
'queryset_class': OrganizationQuerySet,
}
def __unicode__(self):
return self.name or ''
__badges__ = {
PUBLIC_SERVICE: _('Public Service'),
CERTIFIED: _('Certified'),
}
before_save = Signal()
after_save = Signal()
on_create = Signal()
on_update = Signal()
before_delete = Signal()
after_delete = Signal()
@classmethod
def pre_save(cls, sender, document, **kwargs):
cls.before_save.send(document)
@classmethod
def post_save(cls, sender, document, **kwargs):
cls.after_save.send(document)
if kwargs.get('created'):
cls.on_create.send(document)
else:
cls.on_update.send(document)
def url_for(self, *args, **kwargs):
return url_for('organizations.show', org=self, *args, **kwargs)
display_url = property(url_for)
@property
def external_url(self):
return self.url_for(_external=True)
@property
def pending_requests(self):
return [r for r in self.requests if r.status == 'pending']
@property
def refused_requests(self):
return [r for r in self.requests if r.status == 'refused']
@property
def accepted_requests(self):
return [r for r in self.requests if r.status == 'accepted']
@property
def certified(self):
return any(b.kind == CERTIFIED for b in self.badges)
@property
def public_service(self):
is_public_service = any(b.kind == PUBLIC_SERVICE for b in self.badges)
return self.certified and is_public_service
def member(self, user):
for member in self.members:
if member.user == user:
return member
return None
def is_member(self, user):
return self.member(user) is not None
def is_admin(self, user):
member = self.member(user)
return member is not None and member.role == 'admin'
def pending_request(self, user):
for request in self.requests:
if request.user == user and request.status == 'pending':
return request
return None
@classmethod
def get(cls, id_or_slug):
obj = cls.objects(slug=id_or_slug).first()
return obj or cls.objects.get_or_404(id=id_or_slug)
def by_role(self, role):
return filter(lambda m: m.role == role, self.members)
def check_availability(self):
from udata.models import Dataset # Circular imports.
# Performances: only check the first 20 datasets for now.
return chain(*[
dataset.check_availability()
for dataset in Dataset.objects(organization=self).visible()[:20]
])
@cached_property
def json_ld(self):
type_ = 'GovernmentOrganization' if self.public_service \
else 'Organization'
result = {
'@context': 'http://schema.org',
'@type': type_,
'alternateName': self.slug,
'url': url_for('organizations.show', org=self, _external=True),
'name': self.name,
}
if self.description:
result['description'] = mdstrip(self.description)
logo = self.logo(external=True)
if logo:
result['logo'] = logo
return result
class ValueBase():
"""Name:value pair with validation, default value and description"""
def __init__(self, name, default, description='No description available'):
"""Create new value"""
self.__name = name
self.__value = self.__default = self.convert(default)
self.__description = description
self.__on_change = Signal()
# Must be set by derived classes
type = NotImplemented
typename = '<NOT IMPLEMENTED>'
@property
def value(self):
return self.__value
@property
def name(self):
return self.__name
@property
def default(self):
return self.__default
@property
def description(self):
return self.__description
def on_change(self, callback, autoremove=True):
"""Pass this object to `callback` every time its value changes
`callback` may raise ValueError to revert the change (see `set`).
If `autoremove` is True, stop calling callback once it is garbage
collected.
"""
self.__on_change.connect(callback, weak=autoremove)
def set(self, value):
"""Change value if valid, reset to default if None
Callbacks connected to `on_change` are passed this object every time a
value is changed. If a callback raises ValueError, the change is
reverted and a ValueError is raised.
"""
if value is None:
value = self.__default
try:
new_value = self.convert(value)
self.validate(new_value)
except ValueError as e:
raise ValueError('{} = {}: {}'.format(self.name, self.str(value),
e))
else:
prev_value = self.__value
self.__value = new_value
# Callbacks can revert the change by raising ValueError
try:
self.__on_change.send(self)
except ValueError as e:
self.__value = prev_value
raise ValueError('{} = {}: {}'.format(self.name,
self.str(value), e))
def get(self):
"""Return current value"""
return self.value
def validate(self, value):
"""Raise ValueError if value is not valid"""
if not isinstance(value, self.type):
raise ValueError('Not a {}'.format(self.typename))
def convert(self, value):
"""Try to convert value to correct type before validation (e.g. str->int)
Raise ValueError if impossible"""
if isinstance(value, self.type):
return value
try:
if isinstance(value, abc.Iterable):
return self.type(''.join(value))
else:
return self.type(value)
except Exception:
raise ValueError('Not a {}'.format(self.typename))
def __eq__(self, other):
return self.value == other.value
def __ne__(self, other):
return self.value != other.value
def str(self, value=None, default=False):
"""Return prettily stringified value
value: None to return current value, or specific value
default: Whether to return current or default value
"""
if default:
return str(self.default)
elif value is not None:
return str(value)
else:
return str(self.value)
def __str__(self):
return self.str()
def __repr__(self):
return '{}={!r}'.format(self.name, self.value)
class ScriptRunner(object):
def __init__(
self,
session_id,
report,
enqueue_forward_msg,
client_state,
request_queue,
session_state,
uploaded_file_mgr=None,
):
"""Initialize the ScriptRunner.
(The ScriptRunner won't start executing until start() is called.)
Parameters
----------
session_id : str
The ReportSession's id.
report : Report
The ReportSession's report.
client_state : streamlit.proto.ClientState_pb2.ClientState
The current state from the client (widgets and query params).
request_queue : ScriptRequestQueue
The queue that the ReportSession is publishing ScriptRequests to.
ScriptRunner will continue running until the queue is empty,
and then shut down.
widget_mgr : WidgetManager
The ReportSession's WidgetManager.
uploaded_file_mgr : UploadedFileManager
The File manager to store the data uploaded by the file_uploader widget.
"""
self._session_id = session_id
self._report = report
self._enqueue_forward_msg = enqueue_forward_msg
self._request_queue = request_queue
self._uploaded_file_mgr = uploaded_file_mgr
self._client_state = client_state
self._session_state: SessionState = session_state
self._session_state.set_widgets_from_proto(client_state.widget_states)
self.on_event = Signal(doc="""Emitted when a ScriptRunnerEvent occurs.
This signal is *not* emitted on the same thread that the
ScriptRunner was created on.
Parameters
----------
event : ScriptRunnerEvent
exception : BaseException | None
Our compile error. Set only for the
SCRIPT_STOPPED_WITH_COMPILE_ERROR event.
widget_states : streamlit.proto.WidgetStates_pb2.WidgetStates | None
The ScriptRunner's final WidgetStates. Set only for the
SHUTDOWN event.
""")
# Set to true when we process a SHUTDOWN request
self._shutdown_requested = False
# Set to true while we're executing. Used by
# maybe_handle_execution_control_request.
self._execing = False
# This is initialized in start()
self._script_thread = None
def __repr__(self) -> str:
return util.repr_(self)
def start(self):
"""Start a new thread to process the ScriptEventQueue.
This must be called only once.
"""
if self._script_thread is not None:
raise Exception("ScriptRunner was already started")
self._script_thread = ReportThread(
session_id=self._session_id,
enqueue=self._enqueue_forward_msg,
query_string=self._client_state.query_string,
session_state=self._session_state,
uploaded_file_mgr=self._uploaded_file_mgr,
target=self._process_request_queue,
name="ScriptRunner.scriptThread",
)
self._script_thread.start()
def _process_request_queue(self):
"""Process the ScriptRequestQueue and then exits.
This is run in a separate thread.
"""
LOGGER.debug("Beginning script thread")
while not self._shutdown_requested and self._request_queue.has_request:
request, data = self._request_queue.dequeue()
if request == ScriptRequest.STOP:
LOGGER.debug("Ignoring STOP request while not running")
elif request == ScriptRequest.SHUTDOWN:
LOGGER.debug("Shutting down")
self._shutdown_requested = True
elif request == ScriptRequest.RERUN:
self._run_script(data)
else:
raise RuntimeError("Unrecognized ScriptRequest: %s" % request)
# Send a SHUTDOWN event before exiting. This includes the widget values
# as they existed after our last successful script run, which the
# ReportSession will pass on to the next ScriptRunner that gets
# created.
client_state = ClientState()
client_state.query_string = self._client_state.query_string
widget_states = self._session_state.as_widget_states()
client_state.widget_states.widgets.extend(widget_states)
self.on_event.send(ScriptRunnerEvent.SHUTDOWN,
client_state=client_state)
def _is_in_script_thread(self):
"""True if the calling function is running in the script thread"""
return self._script_thread == threading.current_thread()
def maybe_handle_execution_control_request(self):
if not self._is_in_script_thread():
# We can only handle execution_control_request if we're on the
# script execution thread. However, it's possible for deltas to
# be enqueued (and, therefore, for this function to be called)
# in separate threads, so we check for that here.
return
if not self._execing:
# If the _execing flag is not set, we're not actually inside
# an exec() call. This happens when our script exec() completes,
# we change our state to STOPPED, and a statechange-listener
# enqueues a new ForwardEvent
return
# Pop the next request from our queue.
request, data = self._request_queue.dequeue()
if request is None:
return
LOGGER.debug("Received ScriptRequest: %s", request)
if request == ScriptRequest.STOP:
raise StopException()
elif request == ScriptRequest.SHUTDOWN:
self._shutdown_requested = True
raise StopException()
elif request == ScriptRequest.RERUN:
raise RerunException(data)
else:
raise RuntimeError("Unrecognized ScriptRequest: %s" % request)
def _install_tracer(self):
"""Install function that runs before each line of the script."""
def trace_calls(frame, event, arg):
self.maybe_handle_execution_control_request()
return trace_calls
# Python interpreters are not required to implement sys.settrace.
if hasattr(sys, "settrace"):
sys.settrace(trace_calls)
@contextmanager
def _set_execing_flag(self):
"""A context for setting the ScriptRunner._execing flag.
Used by maybe_handle_execution_control_request to ensure that
we only handle requests while we're inside an exec() call
"""
if self._execing:
raise RuntimeError("Nested set_execing_flag call")
self._execing = True
try:
yield
finally:
self._execing = False
def _run_script(self, rerun_data):
"""Run our script.
Parameters
----------
rerun_data: RerunData
The RerunData to use.
"""
assert self._is_in_script_thread()
LOGGER.debug("Running script %s", rerun_data)
# Reset DeltaGenerators, widgets, media files.
in_memory_file_manager.clear_session_files()
ctx = get_report_ctx()
if ctx is None:
# This should never be possible on the script_runner thread.
raise RuntimeError(
"ScriptRunner thread has a null ReportContext. Something has gone very wrong!"
)
ctx.reset(query_string=rerun_data.query_string)
self.on_event.send(ScriptRunnerEvent.SCRIPT_STARTED)
# Compile the script. Any errors thrown here will be surfaced
# to the user via a modal dialog in the frontend, and won't result
# in their previous report disappearing.
try:
with source_util.open_python_file(self._report.script_path) as f:
filebody = f.read()
if config.get_option("runner.magicEnabled"):
filebody = magic.add_magic(filebody, self._report.script_path)
code = compile(
filebody,
# Pass in the file path so it can show up in exceptions.
self._report.script_path,
# We're compiling entire blocks of Python, so we need "exec"
# mode (as opposed to "eval" or "single").
mode="exec",
# Don't inherit any flags or "future" statements.
flags=0,
dont_inherit=1,
# Use the default optimization options.
optimize=-1,
)
except BaseException as e:
# We got a compile error. Send an error event and bail immediately.
LOGGER.debug("Fatal script error: %s" % e)
self._session_state[SCRIPT_RUN_WITHOUT_ERRORS_KEY] = False
self.on_event.send(
ScriptRunnerEvent.SCRIPT_STOPPED_WITH_COMPILE_ERROR,
exception=e)
return
# If we get here, we've successfully compiled our script. The next step
# is to run it. Errors thrown during execution will be shown to the
# user as ExceptionElements.
if config.get_option("runner.installTracer"):
self._install_tracer()
# This will be set to a RerunData instance if our execution
# is interrupted by a RerunException.
rerun_with_data = None
try:
# Create fake module. This gives us a name global namespace to
# execute the code in.
module = _new_module("__main__")
# Install the fake module as the __main__ module. This allows
# the pickle module to work inside the user's code, since it now
# can know the module where the pickled objects stem from.
# IMPORTANT: This means we can't use "if __name__ == '__main__'" in
# our code, as it will point to the wrong module!!!
sys.modules["__main__"] = module
# Add special variables to the module's globals dict.
# Note: The following is a requirement for the CodeHasher to
# work correctly. The CodeHasher is scoped to
# files contained in the directory of __main__.__file__, which we
# assume is the main script directory.
module.__dict__["__file__"] = self._report.script_path
with modified_sys_path(self._report), self._set_execing_flag():
# Run callbacks for widgets whose values have changed.
if rerun_data.widget_states is not None:
# Update the WidgetManager with the new widget_states.
# The old states, used to skip callbacks if values
# haven't changed, are also preserved in the
# WidgetManager.
self._session_state.compact_state()
self._session_state.set_widgets_from_proto(
rerun_data.widget_states)
self._session_state.call_callbacks()
ctx.on_script_start()
exec(code, module.__dict__)
self._session_state[SCRIPT_RUN_WITHOUT_ERRORS_KEY] = True
except RerunException as e:
rerun_with_data = e.rerun_data
except StopException:
pass
except BaseException as e:
self._session_state[SCRIPT_RUN_WITHOUT_ERRORS_KEY] = False
handle_uncaught_app_exception(e)
finally:
self._on_script_finished(ctx)
# Use _log_if_error() to make sure we never ever ever stop running the
# script without meaning to.
_log_if_error(_clean_problem_modules)
if rerun_with_data is not None:
self._run_script(rerun_with_data)
def _on_script_finished(self, ctx: ReportContext) -> None:
"""Called when our script finishes executing, even if it finished
early with an exception. We perform post-run cleanup here.
"""
self._session_state.reset_triggers()
self._session_state.cull_nonexistent(ctx.widget_ids_this_run.items())
# Signal that the script has finished. (We use SCRIPT_STOPPED_WITH_SUCCESS
# even if we were stopped with an exception.)
self.on_event.send(ScriptRunnerEvent.SCRIPT_STOPPED_WITH_SUCCESS)
# Delete expired files now that the script has run and files in use
# are marked as active.
in_memory_file_manager.del_expired_files()
# Force garbage collection to run, to help avoid memory use building up
# This is usually not an issue, but sometimes GC takes time to kick in and
# causes apps to go over resource limits, and forcing it to run between
# script runs is low cost, since we aren't doing much work anyway.
if config.get_option("runner.postScriptGC"):
gc.collect(2)
class DictConfig(SubConfig, DotDict, SignalEmitter):
"""`SubConfig` for dictionaries, extension of ``qcodes.config``.
This is a SubConfig child class for dictionaries.
The DictConfig is a ``DotDict``, meaning that its elements can be accessed
as attributes. For example, the following lines are identical:
>>> dict_config['item1']['item2']
>>> dict_config.item1.item2
Args:
name: Config name. SilQ config root is ``config``.
folder: Absolute config folder path. Automatically set for child
SubConfigs in the root SubConfig.
parent: Parent SubConfig (None for root SubConfig).
config: Pre-existing config to load into new DictConfig.
save_as_dir: Save SubConfig as dir. If False, SubConfig and all elements
in it are saved as a JSON file. If True, SubConfig is saved as a
folder, each dict key being a separate JSON file.
"""
exclude_from_dict = [
'name', 'folder', 'parent', 'initializing', 'signal', '_signal_chain',
'_signal_modifiers', '_mirrored_config_attrs', '_inherited_configs',
'save_as_dir', 'config_path', 'sender', 'multiple_senders'
]
signal = Signal()
def __init__(self,
name: str,
folder: str = None,
parent: SubConfig = None,
config: dict = None,
save_as_dir: bool = None):
self.initializing = True
self._mirrored_config_attrs = {}
self._inherited_configs = []
SubConfig.__init__(self,
name=name,
folder=folder,
parent=parent,
save_as_dir=save_as_dir)
DotDict.__init__(self)
SignalEmitter.__init__(self, initialize_signal=False)
if config is not None:
update_dict(self, config)
elif folder is not None:
self.load()
if self.parent is None:
self._attach_mirrored_items()
def __contains__(self, key):
if DotDict.__contains__(self, key):
return True
elif DotDict.__contains__(self, 'inherit'):
try:
if self['inherit'].startswith('config:') or \
self['inherit'].startswith('environment:'):
return key in self[self['inherit']]
else:
return key in self.parent[self['inherit']]
except KeyError:
return False
else:
return False
def __getitem__(self, key):
if key.startswith('config:'):
if self.parent is not None:
# Let parent config deal with this
return self.parent[key]
elif key == 'config:':
return self
else:
return self[key.replace('config:', '')]
elif key.startswith('environment:'):
if self.parent is None:
if silq.environment is None:
environment_config = self
else:
environment_config = self[silq.environment]
if key == 'environment:':
return environment_config
else:
return environment_config[key.replace('environment:', '')]
else:
# Pass environment:path along to parent
return self.parent[key]
elif DotDict.__contains__(self, key):
val = DotDict.__getitem__(self, key)
if key == 'inherit':
return val
elif isinstance(val, str) and \
(val.startswith('config:') or val.startswith('environment:')):
try:
return self[val]
except KeyError:
raise KeyError(
f"Couldn't retrieve mirrored key {key} -> {val}")
else:
return val
elif 'inherit' in self:
if self['inherit'].startswith('config:') or \
self['inherit'].startswith('environment:'):
return self[self['inherit']][key]
else:
return self.parent[self['inherit']][key]
else:
raise KeyError(f"Couldn't retrieve key {key}")
def __setitem__(self, key, val):
if not isinstance(key, str):
raise TypeError(
f'Config key {key} must have type str, not {type(key)}')
# Update item in dict (modified version of DotDict)
if '.' in key:
myKey, restOfKey = key.split('.', 1)
self.setdefault(
myKey,
DictConfig(name=myKey, config={restOfKey: val}, parent=self))
else:
if isinstance(val, SubConfig):
val.parent = self
dict.__setitem__(self, key, val)
elif isinstance(val, dict):
# First set item, then update the dict. This avoids circular
# referencing from mirrored attributes
sub_dict = DictConfig(name=key, parent=self)
dict.__setitem__(self, key, sub_dict)
update_dict(self[key], val)
# If self.initializing, sub_dict._attach_mirrored_items will be
# called at the end of initialization, otherwise call now
if not self.initializing:
sub_dict._attach_mirrored_items()
elif isinstance(val, list):
dict.__setitem__(self, key, ListConfig(name=key, parent=self))
self[key] += val
else:
dict.__setitem__(self, key, val)
if (self.initializing
and (key == 'inherit' or
(isinstance(val, str) and
(val.startswith('config:')
or val.startswith('environment:'))))):
return
if key == 'inherit':
if (val.startswith('config:')
or val.startswith('environment:')):
config_path = val
else:
# inherit a neighbouring dict element
config_path = join_config_path(self.parent.config_path,
val)
# Register inheritance for signal sending
self[config_path]._inherited_configs.append(
self.config_path)
if isinstance(val, str) and (val.startswith('config:')
or val.startswith('environment:')):
# item should mirror another config item.
target_config_path, target_attr = split_config_path(val)
target_config = self[target_config_path]
if not target_attr in target_config:
raise KeyError(f'{target_config} does not have {target_attr}')
if target_attr not in target_config._mirrored_config_attrs:
target_config._mirrored_config_attrs[target_attr] = []
target_config._mirrored_config_attrs[target_attr].append(
(self.config_path, key))
# Retrieve value from self, which also handles mirroring/inheriting
value = self[key]
# Add key to config path before sending
attr_config_path = join_config_path(self.config_path, key)
# We make sure to get the value, in case the original value is mirrored
self.signal.send(attr_config_path, value=value)
if silq.environment is None:
attr_environment_config_path = attr_config_path.replace(
'config:', 'environment:')
self.signal.send(attr_environment_config_path, value=value)
# If any other config attributes mirror the attribute being set,
# also send signals with sender being the mirrored attributes
if self._inherited_configs:
self._inherited_configs = self._send_ancillary_signals(
value=value,
target_paths=self._inherited_configs,
attr=key,
attr_path=attr_config_path)
# If any other config dicts inherit from this DictConfig via 'inherit',
# Also emit signals with sender being the inherited dicts
if self._mirrored_config_attrs.get(key, []):
updated_mirrored_config = self._send_ancillary_signals(
value=value,
target_paths=self._mirrored_config_attrs[key],
attr=None,
attr_path=attr_config_path)
if updated_mirrored_config:
self._mirrored_config_attrs[key] = updated_mirrored_config
else:
self._mirrored_config_attrs.pop(key, None)
def _send_ancillary_signals(self,
value: Any,
target_paths: List[Union[str, Tuple[str]]],
attr: str = None,
attr_path: str = None):
# mirrored_config_attrs = self._mirrored_config_attrs.get(key, [])
updated_target_paths = []
for target_full_path in target_paths:
try:
if attr is None: # Attr is the second argument of the full path
target_path, target_attr = target_full_path
else: # Use default attr
target_path, target_attr = target_full_path, attr
# Check if mirrored attr value still referencing current
# attr. Getting the unreferenced value is a bit cumbersome
target_config = self[target_path]
# Target either inherits all attrs of current dict, or one of
# its attributes mirrors this attribute. Here we check if this
# hasn't changed
inheritance = dict.get(target_config, 'inherit', None)
if inheritance == self.config_path \
or dict.get(target_config, target_attr) == attr_path \
or (inheritance == self.name and
target_config.parent ==self.parent):
target_attr_path = join_config_path(
target_path, target_attr)
self.signal.send(target_attr_path, value=value)
if silq.environment is None:
target_attr_environment_path = target_attr_path.replace(
'config:', 'environment:')
self.signal.send(target_attr_environment_path,
value=value)
updated_target_paths.append(target_full_path)
except KeyError:
pass
return updated_target_paths
def _attach_mirrored_items(self):
"""Attach mirrored items, to be done at the end of initialization.
Mirrored items are those that inherit, or whose values start with
``config:`` or ``environment:``
Note:
Attribute ``initializing`` will be set to False
"""
self.initializing = False
for key, val in self.items(dependent_value=False):
if isinstance(val, DictConfig):
val._attach_mirrored_items()
elif (key == 'inherit' or (isinstance(val, str) and
(val.startswith('config:')
or val.startswith('environment:')))):
self[key] = val
def values(self):
return [self[key] for key in self.keys()]
def items(self, dependent_value=True):
if dependent_value:
return {key: self[key] for key in self.keys()}.items()
else:
return {key: dict.__getitem__(self, key)
for key in self.keys()}.items()
def get(self, key: str, default: Any = None):
"""Override dictionary get, because it does not call __getitem__.
Args:
key: key to get
default: default value if key not found. None by default
Returns:
value of key if in dictionary, else default value.
"""
try:
return self[key]
except KeyError:
return default
def load(self, folder: str = None, update: bool = True):
"""Load SubConfig from folder.
Args:
folder: Folder from which to load SubConfig.
"""
if update:
self.clear()
config = super().load(folder=folder)
if update:
update_dict(self, config)
return config
def to_dict(self, dependent_value: bool = True):
"""Convert DictConfig including all its children to a dictionary."""
d = {}
for key, val in self.items(dependent_value=dependent_value):
if isinstance(val, DictConfig):
d[key] = val.to_dict(dependent_value=dependent_value)
elif isinstance(val, ListConfig):
d[key] = val.to_list(dependent_value=dependent_value)
else:
d[key] = val
return d
serialize = to_dict
def __deepcopy__(self, memo):
return copy.deepcopy(self.to_dict())
def __init__(
self,
session_id,
report,
enqueue_forward_msg,
client_state,
request_queue,
session_state,
uploaded_file_mgr=None,
):
"""Initialize the ScriptRunner.
(The ScriptRunner won't start executing until start() is called.)
Parameters
----------
session_id : str
The ReportSession's id.
report : Report
The ReportSession's report.
client_state : streamlit.proto.ClientState_pb2.ClientState
The current state from the client (widgets and query params).
request_queue : ScriptRequestQueue
The queue that the ReportSession is publishing ScriptRequests to.
ScriptRunner will continue running until the queue is empty,
and then shut down.
widget_mgr : WidgetManager
The ReportSession's WidgetManager.
uploaded_file_mgr : UploadedFileManager
The File manager to store the data uploaded by the file_uploader widget.
"""
self._session_id = session_id
self._report = report
self._enqueue_forward_msg = enqueue_forward_msg
self._request_queue = request_queue
self._uploaded_file_mgr = uploaded_file_mgr
self._client_state = client_state
self._session_state: SessionState = session_state
self._session_state.set_widgets_from_proto(client_state.widget_states)
self.on_event = Signal(doc="""Emitted when a ScriptRunnerEvent occurs.
This signal is *not* emitted on the same thread that the
ScriptRunner was created on.
Parameters
----------
event : ScriptRunnerEvent
exception : BaseException | None
Our compile error. Set only for the
SCRIPT_STOPPED_WITH_COMPILE_ERROR event.
widget_states : streamlit.proto.WidgetStates_pb2.WidgetStates | None
The ScriptRunner's final WidgetStates. Set only for the
SHUTDOWN event.
""")
# Set to true when we process a SHUTDOWN request
self._shutdown_requested = False
# Set to true while we're executing. Used by
# maybe_handle_execution_control_request.
self._execing = False
# This is initialized in start()
self._script_thread = None
class WokEngine(Synchronizable):
"""
The Wok engine manages the execution of workflow cases.
Each case represents a workflow loaded with a certain configuration.
"""
def __init__(self, conf, conf_base_path=None):
Synchronizable.__init__(self)
self._global_conf = conf
self._expanded_global_conf = conf.clone().expand_vars()
self._conf = self._expanded_global_conf.get("wok", default=Data.element)
self._conf_base_path = conf_base_path
self._log = logger.get_logger("wok.engine")
self._work_path = self._conf.get("work_path", os.path.join(os.getcwd(), "wok-files"))
if not os.path.exists(self._work_path):
os.makedirs(self._work_path)
self._cases = []
self._cases_by_name = {}
self._stopping_cases = {}
#self._lock = Lock()
self._cvar = threading.Condition(self._lock)
self._run_thread = None
self._running = False
self._finished_event = threading.Event()
self._job_task_map = {}
self._logs_threads = []
self._logs_queue = Queue()
self._join_thread = None
self._join_queue = Queue()
self._num_log_threads = self._conf.get("num_log_threads", cpu_count())
self._max_alive_threads = 2 + self._num_log_threads
self._num_alive_threads = AtomicCounter()
self._started = False
self._notified = False
recover = self._conf.get("recover", False)
db_path = os.path.join(self._work_path, "engine.db")
if not recover and os.path.exists(db_path):
os.remove(db_path)
self._db = db.create_engine("sqlite:///{}".format(db_path), drop_tables=not recover)
# platforms
self._platforms = self._create_platforms()
self._platforms_by_name = {}
for platform in self._platforms:
self._platforms_by_name[platform.name] = platform
default_platform_name = self._conf.get("default_platform", self._platforms[0].name)
if default_platform_name not in self._platforms_by_name:
self._log.warn("Platform '{}' not found, using '{}' as the default platform".format(
default_platform_name, self._platforms[0].name))
default_platform_name = self._platforms[0].name
self._default_platform = self._platforms_by_name[default_platform_name]
# projects
if conf_base_path is None:
conf_base_path = os.getcwd()
projects_conf = self._global_conf.get("wok.projects")
self._projects = ProjectManager(projects_conf, base_path=conf_base_path)
self._projects.initialize()
# signals
self.case_created = Signal()
self.case_state_changed = Signal()
self.case_started = Signal()
self.case_finished = Signal()
self.case_removed = Signal()
# recovering
if recover:
self.__recover_from_db()
def _create_platforms(self):
"""
Creates the platform according to the configuration
:return: Platform
"""
platform_confs = self._conf.get("platforms")
if platform_confs is None:
platform_confs = Data.list()
elif not Data.is_list(platform_confs):
self._log.error("Wrong configuration type for 'platforms': {}".format(platform_confs))
platform_confs = Data.list()
if len(platform_confs) == 0:
platform_confs += [Data.element(dict(type="local"))]
platforms = []
names = {}
for pidx, platform_conf in enumerate(platform_confs):
if isinstance(platform_conf, basestring):
if not os.path.isabs(platform_conf) and self._conf_base_path is not None:
platform_conf = os.path.join(self._conf_base_path, platform_conf)
platform_conf = ConfigLoader(platform_conf).load()
if not Data.is_element(platform_conf):
raise errors.ConfigTypeError("wok.platforms[{}]".format(pidx, platform_conf))
ptype = platform_conf.get("type", "local")
name = platform_conf.get("name", ptype)
if name in names:
name = "{}-{}".format(name, names[name])
names[name] += 1
else:
names[name] = 2
platform_conf["name"] = name
if "work_path" not in platform_conf:
platform_conf["work_path"] = os.path.join(self._work_path, "platform_{}".format(name))
self._log.info("Creating '{}' platform ...".format(name))
self._log.debug("Platform configuration: {}".format(repr(platform_conf)))
platforms += [create_platform(ptype, platform_conf)]
return platforms
def _on_job_update(self, event, **kwargs):
self.notify()
def __recover_from_db(self):
raise NotImplementedError()
def __queue_adaptative_get(self, queue, start_timeout=1.0, max_timeout=6.0):
timeout = start_timeout
msg = None
while self._running and msg is None:
try:
msg = queue.get(timeout=timeout)
except Empty:
if timeout < max_timeout:
timeout += 0.5
except:
break
return msg
# Not used anywhere
def __queue_batch_get(self, queue, start_timeout=1, max_timeout=5):
timeout = start_timeout
msg_batch = []
while self._running and len(msg_batch) == 0:
try:
msg_batch += [queue.get(timeout=timeout)]
while not queue.empty():
msg_batch += [queue.get(timeout=timeout)]
except Empty:
if timeout < max_timeout:
timeout += 1
return msg_batch
def __job_submissions(self, session, platform):
#FIXME Be fair with priorities between different cases ?
query = session.query(db.WorkItem)\
.filter(db.WorkItem.state == runstates.READY)\
.filter(db.WorkItem.platform == platform.name)\
.order_by(db.WorkItem.priority)
for workitem in query:
case = self._cases_by_name[workitem.case.name]
task = case.component(workitem.task.cname)
js = JobSubmission(
case=case,
task=task,
workitem_id=workitem.id,
job_name=workitem.cname,
task_conf=task.conf,
priority=workitem.priority)
execution = task.execution
cmd_builder = create_command_builder(execution.mode)
js.script, js.env = cmd_builder.prepare(case, task, workitem.index)
yield js
def __remove_case(self, session, case):
"""
Definitively remove a case. The engine should be locked and no case jobs running.
"""
self._log.info("Dropping case {} ...".format(case.name))
del self._cases_by_name[case.name]
self._cases.remove(case)
# remove engine db objects and finalize case
self._log.debug(" * database ...")
case.remove(session)
self._lock.release()
try:
#TODO clean the job manager output files
try:
self._log.debug(" * logs ...")
logs_path = os.path.join(self._work_path, "logs", case.name)
shutil.rmtree(logs_path)
except:
self._log.exception("Error removing logs at {}".format(logs_path))
# remove data
self._log.debug(" * data ...")
for platform in case.platforms:
platform.data.remove_case(case.name)
# remove storage
self._log.debug(" * storage ...")
for platform in case.platforms:
platform.storage.delete_container(case.name)
# emit signal
self.case_removed.send(case)
finally:
self._lock.acquire()
# threads ----------------------
@synchronized
def _run(self):
set_thread_title()
num_exc = 0
self._running = True
self._num_alive_threads += 1
# Start the logs threads
for i in range(self._num_log_threads):
t = threading.Thread(target=self._logs, args=(i, ), name="wok-engine-logs-%d" % i)
self._logs_threads += [t]
t.start()
# Start the join thread
self._join_thread = threading.Thread(target=self._join, name="wok-engine-join")
self._join_thread.start()
_log = logger.get_logger("wok.engine.run")
_log.debug("Engine run thread ready")
while self._running:
session = db.Session()
try:
#_log.debug("Scheduling new tasks ...")
set_thread_title("scheduling")
updated_tasks = set()
# schedule tasks ready to be executed and save new workitems into the db
for case in self._cases:
tasks = case.schedule(session)
updated_tasks.update(tasks)
session.commit()
# submit workitems ready to be executed
for platform in self._platforms:
job_submissions = self.__job_submissions(session, platform)
for js, job_id, job_state in platform.submit(job_submissions):
workitem = session.query(db.WorkItem).filter(db.WorkItem.id == js.workitem_id).one()
workitem.job_id = job_id
workitem.state = job_state
js.task.dirty = True
session.commit()
updated_tasks.add(js.task)
session.close()
session = None
#_log.debug("Waiting for events ...")
set_thread_title("waiting")
while len(updated_tasks) == 0 and not self._notified and self._running:
self._cvar.wait(1)
self._notified = False
if not self._running:
break
session = db.Session() # there is a session.close() in the finished block
#_log.debug("Stopping jobs for aborting instances ...")
set_thread_title("working")
# check stopping instances
for case in self._cases:
if (case.state == runstates.ABORTING or case.removed) and case not in self._stopping_cases:
num_job_ids = session.query(db.WorkItem.job_id).filter(db.WorkItem.case_id == case.id)\
.filter(~db.WorkItem.state.in_(runstates.TERMINAL_STATES)).count()
if num_job_ids == 0:
if case.state == runstates.ABORTING:
_log.debug("Aborted case {} with no running jobs".format(case.name))
dbcase = session.query(db.Case).filter(db.Case.id == case.id)
dbcase.state = case.state = runstates.ABORTED
session.commit()
else:
_log.debug("Stopped case {} with no running jobs".format(case.name))
if case.removed:
_log.debug("Removing case {} with no running jobs".format(case.name))
self.__remove_case(session, case)
session.commit()
else:
_log.info("Stopping {} jobs for case {} ...".format(num_job_ids, case.name))
self._stopping_cases[case] = set()
for platform in self._platforms:
job_ids = [int(r[0]) for r in session.query(db.WorkItem.job_id)
.filter(db.WorkItem.case_id == case.id)\
.filter(db.WorkItem.platform == platform.name)\
.filter(~db.WorkItem.state.in_(runstates.TERMINAL_STATES))]
self._stopping_cases[case].update(job_ids)
platform.jobs.abort(job_ids)
#_log.debug("Checking job state changes ...")
# detect workitems which state has changed
for platform in self._platforms:
for job_id, state in platform.jobs.state():
try:
workitem = session.query(db.WorkItem).filter(db.WorkItem.job_id == job_id).one()
except NoResultFound:
_log.warn("No work-item available for the job {0} while retrieving state".format(job_id))
platform.jobs.abort([job_id])
platform.jobs.join(job_id)
continue
if workitem.state != state:
case = self._cases_by_name[workitem.case.name]
task = case.component(workitem.task.cname)
task.dirty = True
workitem.state = state
workitem.substate = runstates.LOGS_RETRIEVAL
session.commit()
updated_tasks.add(task)
# if workitem has finished, queue it for logs retrieval
if state in runstates.TERMINAL_STATES:
self._logs_queue.put((workitem.id, job_id))
_log.debug("[{}] Work-Item {} changed state to {}".format(case.name, workitem.cname, state))
#_log.debug("Updating components state ...")
# update affected components state
updated_cases = set([task.case for task in updated_tasks])
for case in updated_cases:
case.update_states(session)
case.update_count_by_state(session)
case.clean_components(session)
session.commit()
if case.state == runstates.RUNNING:
self._lock.release()
try:
self.case_started.send(case)
finally:
self._lock.acquire()
for task in updated_tasks:
case = task.case
#_log.debug("[{}] Component {} updated state to {} ...".format(
# component.case.name, component.cname, component.state))
count = task.workitem_count_by_state
sb = ["[{}] {} ({})".format(case.name, task.cname, task.state.title)]
sep = " "
for state in runstates.STATES:
if state in count:
sb += [sep, "{}={}".format(state.symbol, count[state])]
if sep == " ":
sep = ", "
if task.state == runstates.FINISHED and task.state in count:
elapsed = str(task.elapsed)
elapsed = elapsed.split(".")[0]
sb += [" ", "<{}>".format(elapsed)]
self._log.info("".join(sb))
except BaseException as ex:
num_exc += 1
_log.warn("Exception in run thread ({}): {}".format(num_exc, str(ex)))
#if num_exc > 3:
# raise
#else:
from traceback import format_exc
_log.debug(format_exc())
try:
if session is not None:
session.rollback()
except Exception as ex:
_log.warn("Session rollback failed")
_log.exception(ex)
finally:
try:
if session is not None:
session.close()
except Exception as ex:
_log.warn("Session close failed")
_log.exception(ex)
session = None
set_thread_title("finishing")
try:
# print cases state before leaving the thread
#for case in self._cases:
# _log.debug("Case state:\n" + repr(case))
for t in self._logs_threads:
t.join()
self._lock.release()
self._join_thread.join()
self._lock.acquire()
_log.debug("Engine run thread finished")
except Exception as ex:
_log.exception(ex)
self._running = False
self._num_alive_threads -= 1
def _logs(self, index):
"Log retrieval thread"
set_thread_title()
self._num_alive_threads += 1
_log = logger.get_logger("wok.engine.logs-{}".format(index))
_log.debug("Engine logs thread ready")
num_exc = 0
while self._running:
set_thread_title("waiting")
# get the next task to retrieve the logs
job_info = self.__queue_adaptative_get(self._logs_queue)
if job_info is None:
continue
workitem_id, job_id = job_info
session = db.Session()
task = None
try:
workitem = session.query(db.WorkItem).filter(db.WorkItem.id == workitem_id).one()
case = self._cases_by_name[workitem.case.name]
task = case.component(workitem.task.cname)
set_thread_title(workitem.cname)
_log.debug("[{}] Reading logs for work-item {} ...".format(case.name, workitem.cname))
output = task.platform.jobs.output(job_id)
if output is None:
output = StringIO.StringIO()
path = os.path.join(self._work_path, "logs", case.name, task.cname)
if not os.path.isdir(path):
try:
os.makedirs(path)
except:
if not os.path.isdir(path):
raise
path = os.path.join(path, "{:08}.db".format(workitem.index))
if os.path.isfile(path):
os.remove(path)
logs_db = LogsDb(path)
logs_db.open()
logs_db.add(case.name, task.cname, workitem.index, output)
logs_db.close()
_log.debug("[{}] Done with logs of work-item {}".format(case.name, workitem.cname))
except BaseException as ex:
num_exc += 1
session.rollback()
_log.info("Exception in logs thread ({}): {}".format(num_exc, str(ex)))
from traceback import format_exc
_log.debug(format_exc())
finally:
workitem.substate = runstates.JOINING
self._join_queue.put(job_info)
session.commit()
session.close()
self._num_alive_threads -= 1
_log.debug("Engine logs thread finished")
def _join(self):
"Joiner thread"
set_thread_title()
self._num_alive_threads += 1
_log = logger.get_logger("wok.engine.join")
_log.debug("Engine join thread ready")
session = None
num_exc = 0
while self._running:
try:
set_thread_title("waiting")
job_info = self.__queue_adaptative_get(self._join_queue)
if job_info is None:
continue
workitem_id, job_id = job_info
with self._lock:
session = db.Session()
workitem = session.query(db.WorkItem).filter(db.WorkItem.id == workitem_id).one()
case = self._cases_by_name[workitem.case.name]
task = case.component(workitem.task.cname)
set_thread_title(task.cname)
#_log.debug("Joining work-item %s ..." % task.cname)
jr = task.platform.jobs.join(job_id)
wr = Data.element(dict(
hostname=jr.hostname,
created=jr.created.strftime(_DT_FORMAT) if jr.created is not None else None,
started=jr.started.strftime(_DT_FORMAT) if jr.started is not None else None,
finished=jr.finished.strftime(_DT_FORMAT) if jr.finished is not None else None,
exitcode=jr.exitcode.code if jr.exitcode is not None else None))
r = task.platform.data.load_workitem_result(case.name, task.cname, workitem.index)
if r is not None:
if r.exception is not None:
wr["exception"] = r.exception
if r.trace is not None:
wr["trace"] = r.trace
workitem.substate = None
workitem.result = wr
case.num_active_workitems -= 1
session.commit()
# check if there are still more work-items
num_workitems = session.query(func.count(db.WorkItem.id)).filter(
~db.WorkItem.state.in_(runstates.TERMINAL_STATES)).scalar()
if self._single_run and num_workitems == 0:
stop_engine = True
for case in self._cases:
stop_engine = stop_engine and (case.state in runstates.TERMINAL_STATES)
#self._running = not stop_engine
if stop_engine:
self._finished_event.set()
_log.debug("[{}] Joined work-item {}".format(case.name, workitem.cname))
# check stopping instances
if case in self._stopping_cases:
job_ids = self._stopping_cases[case]
if job_id in job_ids:
job_ids.remove(job_id)
if len(job_ids) == 0:
del self._stopping_cases[case]
if case.state == runstates.ABORTING:
workitem.case.state = case.state = runstates.ABORTED
session.commit()
if case.removed:
self.__remove_case(session, case)
session.commit()
else:
_log.debug("Still waiting for {} jobs to stop".format(len(job_ids)))
if case.state in runstates.TERMINAL_STATES and case.num_active_workitems == 0:
_log.info("[{}] Case {}. Total time: {}".format(case.name, case.state.title, str(case.elapsed)))
self._lock.release()
try:
self.case_finished.send(case)
finally:
self._lock.acquire()
except BaseException as ex:
num_exc += 1
_log.warn("Exception in join thread ({}): {}".format(num_exc, str(ex)))
from traceback import format_exc
_log.debug(format_exc())
try:
if session is not None:
session.rollback()
except Exception as ex:
_log.warn("Session rollback failed")
_log.exception(ex)
finally:
try:
if session is not None:
session.close()
except Exception as ex:
_log.warn("Session close failed")
_log.exception(ex)
self._num_alive_threads -= 1
_log.debug("Engine join thread finished")
# API -----------------------------------
@property
def conf(self):
return self._conf
@property
def work_path(self):
return self._work_path
@property
def projects(self):
return self._projects
def platform(self, name):
return self._platforms_by_name.get(name)
@property
def default_platform(self):
return self._default_platform
@synchronized
def start(self, wait=True, single_run=False):
self._log.info("Starting engine ...")
started_platforms = []
try:
for platform in self._platforms:
started_platforms += [platform]
platform.start()
platform.callbacks.add(events.JOB_UPDATE, self._on_job_update)
except BaseException as ex:
self._log.error(str(ex))
for platform in started_platforms:
platform.close()
raise
#for project in self._projects:
# self._default_platform.sync_project(project)
self._single_run = single_run
self._run_thread = threading.Thread(target=self._run, name="wok-engine-run")
self._run_thread.start()
self._lock.release()
try:
try:
self._num_alive_threads.wait_condition(lambda value: value < self._max_alive_threads)
self._started = True
self._log.info("Engine started")
except KeyboardInterrupt:
wait = False
self._log.warn("Ctrl-C pressed ...")
except Exception as e:
wait = False
self._log.error("Exception while waiting for the engine to start")
self._log.exception(e)
if wait:
self.wait()
finally:
self._lock.acquire()
def wait(self):
self._log.info("Waiting for the engine to finish ...")
try:
finished = self._finished_event.wait(1)
while not finished:
finished = self._finished_event.wait(1)
except KeyboardInterrupt:
self._log.warn("Ctrl-C pressed ...")
except Exception as e:
self._log.error("Exception while waiting for the engine to finish, stopping the engine ...")
self._log.exception(e)
self._log.info("Finished waiting for the engine ...")
def _stop_threads(self):
self._log.info("Stopping threads ...")
if self._run_thread is not None:
with self._lock:
self._running = False
self._cvar.notify()
while self._run_thread.isAlive():
try:
self._run_thread.join(1)
except KeyboardInterrupt:
self._log.warn("Ctrl-C pressed, killing the process ...")
import signal
os.kill(os.getpid(), signal.SIGTERM)
except Exception as e:
self._log.error("Exception while waiting for threads to finish ...")
self._log.exception(e)
self._log.warn("killing the process ...")
exit(-1)
import signal
os.kill(os.getpid(), signal.SIGTERM)
self._run_thread = None
self._log.info("All threads finished ...")
@synchronized
def stop(self):
self._log.info("Stopping the engine ...")
self._finished_event.set()
self._lock.release()
try:
if self._run_thread is not None:
self._stop_threads()
for platform in self._platforms:
platform.close()
finally:
self._lock.acquire()
self._started = False
self._log.info("Engine stopped")
def running(self):
return self._started
def notify(self, lock=True):
if lock:
self._lock.acquire()
self._notified = True
self._cvar.notify()
if lock:
self._lock.release()
@synchronized
def cases(self):
instances = []
for inst in self._cases:
instances += [SynchronizedCase(self, inst)]
return instances
@synchronized
def case(self, name):
inst = self._cases_by_name.get(name)
if inst is None:
return None
return SynchronizedCase(self, inst)
@synchronized
def exists_case(self, name):
return name in self._cases_by_name
@synchronized
def create_case(self, case_name, conf_builder, project_name, flow_name, container_name):
"Creates a new workflow case"
session = db.Session()
if session.query(db.Case).filter(db.Case.name==case_name).count() > 0:
raise Exception("A case with this name already exists: {}".format(case_name))
flow_uri = "{}:{}".format(project_name, flow_name)
self._log.info("Creating case {} from {} ...".format(case_name, flow_uri))
try:
try:
flow = self.projects.load_flow(flow_uri)
project = flow.project
except:
self._log.error("Error while loading the workflow from {}".format(flow_uri))
raise
for platform in self._platforms:
try:
platform.data.remove_case(case_name)
platform.data.create_case(case_name)
except:
self._log.error("Error while initializing data for case {}".format(case_name))
raise
try:
case = Case(case_name, conf_builder, project, flow, container_name, engine=self)
self._cases += [case]
self._cases_by_name[case_name] = case
case.persist(session)
session.flush()
self.notify(lock=False)
except:
self._log.error("Error while creating case {} for the workflow {} with configuration {}".format(
case_name, flow_uri, conf_builder.get_conf()))
raise
except:
session.rollback()
#self._log.error("Error while creating case {} for the workflow {} with configuration {}".format(
# case_name, flow_uri, conf_builder.get_conf()))
raise
session.close()
self._log.debug("\n" + repr(case))
self._lock.release()
try:
self.case_created.send(case)
finally:
self._lock.acquire()
return SynchronizedCase(self, case)
@synchronized
def remove_case(self, name):
if name in self._cases_by_name:
session = db.Session()
case = self._cases_by_name[name]
dbcase = session.query(db.Case).filter(db.Case.id == case.id).first()
dbcase.removed = case.removed = True
if case.state not in runstates.TERMINAL_STATES + [runstates.READY]:
dbcase.state = case.state = runstates.ABORTING
num_retries = 3
while num_retries > 0:
try:
session.commit()
self.notify(lock=False)
self._log.debug("Case {} marked for removal".format(case.name))
except BaseException as ex:
num_retries -= 1
_log.info("Exception in remove_case: {}".format(str(ex)))
if num_retries > 0:
_log.info("Remaining retries = {}".format(num_retries))
import time
time.sleep(1)
else:
from traceback import format_exc
_log.debug(format_exc())
session.rollback()
finally:
session.close()
else:
self._log.error("Trying to remove a non existing case: {}".format(name))
'''
def __repr__(self):
base = Signal.__repr__(self)
return "%s; %r>" % (base[:-1], self.name)
class ScriptRunner(object):
def __init__(
self,
report,
main_dg,
sidebar_dg,
widget_states,
request_queue,
uploaded_file_mgr=None,
):
"""Initialize the ScriptRunner.
(The ScriptRunner won't start executing until start() is called.)
Parameters
----------
report : Report
The ReportSession's report.
main_dg : DeltaGenerator
The ReportSession's main DeltaGenerator.
sidebar_dg : DeltaGenerator
The ReportSession's sidebar DeltaGenerator.
widget_states : streamlit.proto.Widget_pb2.WidgetStates
The ReportSession's current widget states
request_queue : ScriptRequestQueue
The queue that the ReportSession is publishing ScriptRequests to.
ScriptRunner will continue running until the queue is empty,
and then shut down.
uploaded_file_mgr : UploadedFileManager
The File manager to store the data uploaded by the file_uplpader widget.
"""
self._report = report
self._main_dg = main_dg
self._sidebar_dg = sidebar_dg
self._request_queue = request_queue
self._uploaded_file_mgr = uploaded_file_mgr
self._widgets = Widgets()
self._widgets.set_state(widget_states)
self.on_event = Signal(doc="""Emitted when a ScriptRunnerEvent occurs.
This signal is *not* emitted on the same thread that the
ScriptRunner was created on.
Parameters
----------
event : ScriptRunnerEvent
exception : BaseException | None
Our compile error. Set only for the
SCRIPT_STOPPED_WITH_COMPILE_ERROR event.
widget_states : streamlit.proto.Widget_pb2.WidgetStates | None
The ScriptRunner's final WidgetStates. Set only for the
SHUTDOWN event.
""")
# Set to true when we process a SHUTDOWN request
self._shutdown_requested = False
# Set to true while we're executing. Used by
# maybe_handle_execution_control_request.
self._execing = False
# This is initialized in start()
self._script_thread = None
def start(self):
"""Start a new thread to process the ScriptEventQueue.
This must be called only once.
"""
if self._script_thread is not None:
raise Exception("ScriptRunner was already started")
self._script_thread = ReportThread(
main_dg=self._main_dg,
sidebar_dg=self._sidebar_dg,
widgets=self._widgets,
target=self._process_request_queue,
name="ScriptRunner.scriptThread",
uploaded_file_mgr=self._uploaded_file_mgr,
)
self._script_thread.start()
def _process_request_queue(self):
"""Process the ScriptRequestQueue and then exits.
This is run in a separate thread.
"""
LOGGER.debug("Beginning script thread")
while not self._shutdown_requested and self._request_queue.has_request:
request, data = self._request_queue.dequeue()
if request == ScriptRequest.STOP:
LOGGER.debug("Ignoring STOP request while not running")
elif request == ScriptRequest.SHUTDOWN:
LOGGER.debug("Shutting down")
self._shutdown_requested = True
elif request == ScriptRequest.RERUN:
self._run_script(data)
else:
raise RuntimeError("Unrecognized ScriptRequest: %s" % request)
# Send a SHUTDOWN event before exiting. This includes the widget values
# as they existed after our last successful script run, which the
# ReportSession will pass on to the next ScriptRunner that gets
# created.
self.on_event.send(ScriptRunnerEvent.SHUTDOWN,
widget_states=self._widgets.get_state())
def _is_in_script_thread(self):
"""True if the calling function is running in the script thread"""
return self._script_thread == threading.current_thread()
def maybe_handle_execution_control_request(self):
if not self._is_in_script_thread():
# We can only handle execution_control_request if we're on the
# script execution thread. However, it's possible for deltas to
# be enqueued (and, therefore, for this function to be called)
# in separate threads, so we check for that here.
return
if not self._execing:
# If the _execing flag is not set, we're not actually inside
# an exec() call. This happens when our script exec() completes,
# we change our state to STOPPED, and a statechange-listener
# enqueues a new ForwardEvent
return
# Pop the next request from our queue.
request, data = self._request_queue.dequeue()
if request is None:
return
LOGGER.debug("Received ScriptRequest: %s", request)
if request == ScriptRequest.STOP:
raise StopException()
elif request == ScriptRequest.SHUTDOWN:
self._shutdown_requested = True
raise StopException()
elif request == ScriptRequest.RERUN:
raise RerunException(data)
else:
raise RuntimeError("Unrecognized ScriptRequest: %s" % request)
def _install_tracer(self):
"""Install function that runs before each line of the script."""
def trace_calls(frame, event, arg):
self.maybe_handle_execution_control_request()
return trace_calls
# Python interpreters are not required to implement sys.settrace.
if hasattr(sys, "settrace"):
sys.settrace(trace_calls)
@contextmanager
def _set_execing_flag(self):
"""A context for setting the ScriptRunner._execing flag.
Used by maybe_handle_execution_control_request to ensure that
we only handle requests while we're inside an exec() call
"""
if self._execing:
raise RuntimeError("Nested set_execing_flag call")
self._execing = True
try:
yield
finally:
self._execing = False
def _run_script(self, rerun_data):
"""Run our script.
Parameters
----------
rerun_data: RerunData
The RerunData to use.
"""
assert self._is_in_script_thread()
LOGGER.debug("Running script %s", rerun_data)
# Reset delta generator so it starts from index 0.
import streamlit as st
st._reset(self._main_dg, self._sidebar_dg)
self.on_event.send(ScriptRunnerEvent.SCRIPT_STARTED)
# Compile the script. Any errors thrown here will be surfaced
# to the user via a modal dialog in the frontend, and won't result
# in their previous report disappearing.
try:
# Python 3 got rid of the native execfile() command, so we read
# the file, compile it, and exec() it. This implementation is
# compatible with both 2 and 3.
with source_util.open_python_file(self._report.script_path) as f:
filebody = f.read()
if config.get_option("runner.magicEnabled"):
filebody = magic.add_magic(filebody, self._report.script_path)
code = compile(
filebody,
# Pass in the file path so it can show up in exceptions.
self._report.script_path,
# We're compiling entire blocks of Python, so we need "exec"
# mode (as opposed to "eval" or "single").
mode="exec",
# Don't inherit any flags or "future" statements.
flags=0,
dont_inherit=1,
# Parameter not supported in Python2:
# optimize=-1,
)
except BaseException as e:
# We got a compile error. Send an error event and bail immediately.
LOGGER.debug("Fatal script error: %s" % e)
self.on_event.send(
ScriptRunnerEvent.SCRIPT_STOPPED_WITH_COMPILE_ERROR,
exception=e)
return
# If we get here, we've successfully compiled our script. The next step
# is to run it. Errors thrown during execution will be shown to the
# user as ExceptionElements.
# Update the Widget singleton with the new widget_state
if rerun_data.widget_state is not None:
self._widgets.set_state(rerun_data.widget_state)
if config.get_option("runner.installTracer"):
self._install_tracer()
# This will be set to a RerunData instance if our execution
# is interrupted by a RerunException.
rerun_with_data = None
try:
# Create fake module. This gives us a name global namespace to
# execute the code in.
module = _new_module("__main__")
# Install the fake module as the __main__ module. This allows
# the pickle module to work inside the user's code, since it now
# can know the module where the pickled objects stem from.
# IMPORTANT: This means we can't use "if __name__ == '__main__'" in
# our code, as it will point to the wrong module!!!
sys.modules["__main__"] = module
# Add special variables to the module's globals dict.
# Note: The following is a requirement for the CodeHasher to
# work correctly. The CodeHasher is scoped to
# files contained in the directory of __main__.__file__, which we
# assume is the main script directory.
module.__dict__["__file__"] = self._report.script_path
with modified_sys_path(self._report), self._set_execing_flag():
exec(code, module.__dict__)
except RerunException as e:
rerun_with_data = e.rerun_data
except StopException:
pass
except BaseException as e:
# Show exceptions in the Streamlit report.
LOGGER.debug(e)
import streamlit as st
st.exception(e) # This is OK because we're in the script thread.
# TODO: Clean up the stack trace, so it doesn't include
# ScriptRunner.
finally:
self._widgets.reset_triggers()
self.on_event.send(ScriptRunnerEvent.SCRIPT_STOPPED_WITH_SUCCESS)
# Use _log_if_error() to make sure we never ever ever stop running the
# script without meaning to.
_log_if_error(_clean_problem_modules)
if rerun_with_data is not None:
self._run_script(rerun_with_data)
def __init__(self,
df: DataFrame,
categorical_columns: typing.Union[typing.List[str],
None] = None,
sample: typing.Union[float, int, None] = None,
seed: typing.Union[int, None] = None,
*args,
**kwargs):
"""
:param df: A pandas.DataFrame object.
:param categorical_columns: If given, specifies which columns are to be interpreted as categorical.
Those columns have to include all columns of the DataFrame
which have type `object`, `str`, `bool` or `category`.
This means it can only add columns which do not have the aforementioned types.
:param seed: Random seed used for sampling the data.
Values can be any integer between 0 and 2**32 - 1 inclusive or None.
:param args: args for HasTraits superclass
:param kwargs: kwargs for HasTraits superclass
"""
super().__init__(*args, **kwargs)
validate.validate_data_frame(df)
validate.validate_sample(sample)
validate.validate_seed(seed)
self.selection_type = SelectionType.STANDARD
if sample is None:
self._df = df
else:
if isinstance(sample, float):
if sample < 0.0 or sample > 1.0:
raise ValueError(
"Sample has to be between 0.0 and 1.0. Invalid value : %d"
% sample)
self._df = df.sample(frac=sample, random_state=seed)
else:
if sample < 0 or sample > len(df):
raise ValueError(
"Sample has to be between 0 and the length of the DataFrame (%d). Invalid value: "
"%d" % (len(df), sample))
self._df = df.sample(n=sample, random_state=seed)
self.columns = list(self._df.columns.values)
self.column_store = ColumnStore(self._df, self.columns,
categorical_columns)
self.numerical_columns = self.column_store.numerical_columns
self.time_columns = self.column_store.time_columns
self.categorical_columns = self.column_store.categorical_columns
if self.categorical_columns is not None:
self._df[self.categorical_columns].astype(dtype="category")
self._length = len(self._df)
self._indices = set(range(self._length))
self._brushed_indices: typing.Set[int] = self._indices
self.brushed_data_invalidated = True
self._brushed_data = None
self.on_indices_changed = Signal()
if len(self.columns) < 2:
raise ValueError(
"The passed DataFrame only has %d column, which is insufficient for analysis."
% len(self.columns))
self.few_num_cols = len(self.numerical_columns) < 2
self.few_cat_cols = len(self.categorical_columns) < 2
import sys
from blinker import Signal
signal = Signal('disconnect_signal')
@signal.connect_via(Signal.ANY)
def receive_data(sender, **kw):
print("Caught strong signal from : {}, data: {}".format(sender, kw))
return "test"
@signal.connect_via(Signal.ANY)
def receive_data2(sender, **kw):
print("Caught signal2 from : {}, data: {}".format(sender, kw))
return "received2"
if __name__ == "__main__":
if len(sys.argv) > 1 and sys.argv[1] == 'disconnect':
signal.disconnect(receive_data, Signal.ANY)
result = signal.send('anonymous', abc=123)
print(result)
class GraphBase(ISerializable):
"""Data structure representing a nodes graph
:var graphManager: reference to graph manager
:vartype graphManager: :class:`~PyFlow.Core.GraphManager.GraphManager`
:var nameChanged: signal emitted after graph name was changed
:vartype nameChanged: :class:`~blinker.base.Signal`
:var categoryChanged: signal emitted after graph category was changed
:vartype categoryChanged: :class:`~blinker.base.Signal`
:var childGraphs: a set of child graphs
:vartype childGraphs: :class:`set`
:var nodes: nodes storage. Dictionary with :class:`uuid.UUID` as key and :class:`~PyFlow.Core.NodeBase.NodeBase` as value
:vartype nodes: :class:`dict`
:var uid: Unique identifier
:vartype uid: :class:`uuid.UUID`
.. py:method:: parentGraph
:property:
:getter: Returns a reference to parent graph or None if this graph is root
:setter: Sets new graph as new parent for this graph
.. py:method:: name
:property:
:getter: Returns graph name
:setter: Sets new graph name and fires signal
.. py:method:: category
:property:
:getter: Returns graph category
:setter: Sets new graph category and fires signal
.. py:method:: pins
:property:
:getter: Returns dictionary with :class:`uuid.UUID` as key and :class:`~PyFlow.Core.PinBase.PinBase` as value
:rtype: dict
"""
def __init__(self, name, manager, parentGraph=None, category='', uid=None, *args, **kwargs):
super(GraphBase, self).__init__(*args, **kwargs)
self.graphManager = manager
self._isRoot = False
self.nameChanged = Signal(str)
self.categoryChanged = Signal(str)
self.__name = name
self.__category = category
self._parentGraph = None
self.childGraphs = set()
self.parentGraph = parentGraph
self._nodes = {}
self._vars = {}
self.uid = uuid.uuid4() if uid is None else uid
manager.add(self)
def setIsRoot(self, bIsRoot):
"""Sets this graph as root
.. warning:: Used internally
:param bIsRoot: -- Root or not
:type bIsRoot: :class:`bool`
"""
self._isRoot = bIsRoot
def isRoot(self):
"""Whether this graph is root or not
:rtype: :class:`bool`
"""
return self._isRoot
def getVars(self):
"""Returns this graph's variables storage
:returns: :class:`uuid.UUID` - :class:`~PyFlow.Core.NodeBase.NodeBase` dict
:rtype: :class:`dict`
"""
return self._vars
@property
def parentGraph(self):
return self._parentGraph
@parentGraph.setter
def parentGraph(self, newParentGraph):
if self.isRoot():
self._parentGraph = None
return
if newParentGraph is not None:
if self._parentGraph is not None:
# remove self from old parent's children set
if self in self._parentGraph.childGraphs:
self._parentGraph.childGraphs.remove(self)
# add self to new parent's children set
newParentGraph.childGraphs.add(self)
# update parent
self._parentGraph = newParentGraph
def depth(self):
"""Returns depth level of this graph
:rtype: int
"""
result = 1
parent = self._parentGraph
while parent is not None:
result += 1
parent = parent.parentGraph
return result
def getVarList(self):
"""return list of variables from active graph
:rtype: list(:class:`~PyFlow.Core.Variable.Variable`)
"""
result = list(self._vars.values())
parent = self._parentGraph
while parent is not None:
result += list(parent._vars.values())
parent = parent.parentGraph
return result
def serialize(self, *args, **kwargs):
"""Returns serialized representation of this graph
:rtype: dict
"""
result = {
'name': self.name,
'category': self.category,
'vars': [v.serialize() for v in self._vars.values()],
'nodes': [n.serialize() for n in self._nodes.values()],
'depth': self.depth(),
'isRoot': self.isRoot(),
'parentGraphName': str(self._parentGraph.name) if self._parentGraph is not None else str(None)
}
return result
def populateFromJson(self, jsonData):
"""Populates itself from serialized data
:param jsonData: serialized graph
:type jsonData: dict
"""
self.clear()
parentGraphName = jsonData['parentGraphName']
parentGraph = self.graphManager.findGraph(parentGraphName)
self.parentGraph = parentGraph
self.name = self.graphManager.getUniqGraphName(jsonData['name'])
self.category = jsonData['category']
self.setIsRoot(jsonData['isRoot'])
if self.isRoot():
self.name = "root"
# restore vars
for varJson in jsonData['vars']:
var = Variable.deserialize(self, varJson)
self._vars[var.uid] = var
# restore nodes
for nodeJson in jsonData['nodes']:
# check if variable getter or setter and pass variable
nodeArgs = ()
nodeKwargs = {}
if nodeJson['type'] in ('getVar', 'setVar'):
nodeKwargs['var'] = self._vars[uuid.UUID(nodeJson['varUid'])]
nodeJson['owningGraphName'] = self.name
node = getRawNodeInstance(nodeJson['type'], packageName=nodeJson['package'], libName=nodeJson['lib'], *nodeArgs, **nodeKwargs)
self.addNode(node, nodeJson)
# restore connection
for nodeJson in jsonData['nodes']:
for nodeOutputJson in nodeJson['outputs']:
for linkData in nodeOutputJson['linkedTo']:
try:
lhsNode = self._nodes[uuid.UUID(linkData["lhsNodeUid"])]
except Exception as e:
lhsNode = self.findNode(linkData["lhsNodeName"])
try:
lhsPin = lhsNode.orderedOutputs[linkData["outPinId"]]
except Exception as e:
continue
try:
rhsNode = self._nodes[uuid.UUID(linkData["rhsNodeUid"])]
except Exception as e:
rhsNode = self.findNode(linkData["rhsNodeName"])
try:
rhsPin = rhsNode.orderedInputs[linkData["inPinId"]]
except Exception as e:
continue
if not arePinsConnected(lhsPin, rhsPin):
connected = connectPins(lhsPin, rhsPin)
# assert(connected is True), "Failed to restore connection"
if not connected:
print("Failed to restore connection", lhsPin, rhsPin)
connectPins(lhsPin, rhsPin)
def remove(self):
"""Removes this graph as well as child graphs. Deepest graphs will be removed first
"""
# graphs should be removed from leafs to root
for childGraph in set(self.childGraphs):
childGraph.remove()
# remove itself
self.graphManager.removeGraph(self)
def clear(self):
"""Clears content of this graph as well as child graphs. Deepest graphs will be cleared first
"""
# graphs should be cleared from leafs to root
for childGraph in set(self.childGraphs):
childGraph.clear()
# clear itself
for node in list(self._nodes.values()):
node.kill()
self._nodes.clear()
for var in list(self._vars.values()):
self.killVariable(var)
self._vars.clear()
@property
def name(self):
return self.__name
@name.setter
def name(self, value):
value = str(value)
if self.__name != value:
self.__name = value
self.nameChanged.send(self.__name)
@property
def category(self):
return self.__category
@category.setter
def category(self, value):
self.__category = str(value)
self.categoryChanged.send(self.__category)
def Tick(self, deltaTime):
"""Executed periodically
:param deltaTime: Elapsed time since last tick
:type deltaTime: float
"""
for node in self._nodes.values():
node.Tick(deltaTime)
@property
def pins(self):
result = {}
for n in self.getNodesList():
for pin in tuple(n.inputs.values()) + tuple(n.outputs.values()):
result[pin.uid] = pin
return result
def createVariable(self, dataType=str('AnyPin'), accessLevel=AccessLevel.public, uid=None, name=str("var")):
"""Creates variable inside this graph scope
:param dataType: Variable data type
:type dataType: str
:param accessLevel: Variable access level
:type accessLevel: :class:`~PyFlow.Core.Common.AccessLevel`
:param uid: Variable unique identifier
:type uid: :class:`uuid.UUID`
:param name: Variable name
:type name: str
"""
name = self.graphManager.getUniqVariableName(name)
var = Variable(self, getPinDefaultValueByType(dataType), name, dataType, accessLevel=accessLevel, uid=uid)
self._vars[var.uid] = var
return var
# TODO: add arguments to deal with references of this var
# disconnect pins or mark nodes invalid
def killVariable(self, var):
"""Removes variable from this graph
:param var: Variable to remove
:type var: :class:`~PyFlow.Core.Variable.Variable`
"""
assert(isinstance(var, Variable))
if var.uid in self._vars:
popped = self._vars.pop(var.uid)
popped.killed.send()
def getNodes(self):
"""Returns this graph's nodes storage
:rtype: dict(:class:`~PyFlow.Core.NodeBase.NodeBase`)
"""
return self._nodes
def getNodesList(self, classNameFilters=[]):
"""Returns this graph's nodes list
:rtype: list(:class:`~PyFlow.Core.NodeBase.NodeBase`)
"""
if len(classNameFilters) > 0:
return [n for n in self._nodes.values() if n.__class__.__name__ in classNameFilters]
else:
return [n for n in self._nodes.values()]
def findNode(self, name):
"""Tries to find node by name
:param name: Node name
:type name: str or None
"""
for i in self._nodes.values():
if i.name == name:
return i
return None
def getNodesByClassName(self, className):
"""Returns a list of nodes filtered by class name
:param className: Class name of target nodes
:type className: str
:rtype: list(:class:`~PyFlow.Core.NodeBase.NodeBase`)
"""
nodes = []
for i in self.getNodesList():
if i.__class__.__name__ == className:
nodes.append(i)
return nodes
def findPinByUid(self, uid):
"""Tries to find pin by uuid
:param uid: Unique identifier
:type uid: :class:`~uuid.UUID`
:rtype: :class:`~PyFlow.Core.PinBase.PinBase` or None
"""
pin = None
if uid in self.pins:
pin = self.pins[uid]
return pin
def findPin(self, pinName):
"""Tries to find pin by name
:param pinName: String to search by
:type pinName: str
:rtype: :class:`~PyFlow.Core.PinBase.PinBase` or None
"""
result = None
for pin in self.pins.values():
if pinName == pin.getFullName():
result = pin
break
return result
def getInputNode(self):
"""Creates and adds to graph :class:`~PyFlow.Packages.PyFlowBase.Nodes.graphNodes.graphInputs` node
pins on this node will be exposed on compound node as input pins
:rtype: :class:`~PyFlow.Core.NodeBase.NodeBase`
"""
node = getRawNodeInstance("graphInputs", "PyFlowBase")
self.addNode(node)
return node
def getOutputNode(self):
"""Creates and adds to graph :class:`~PyFlow.Packages.PyFlowBase.Nodes.graphNodes.graphOutputs` node.
pins on this node will be exposed on compound node as output pins
:rtype: :class:`~PyFlow.Core.NodeBase.NodeBase`
"""
node = getRawNodeInstance("graphOutputs", "PyFlowBase")
self.addNode(node)
return node
def addNode(self, node, jsonTemplate=None):
"""Adds node to storage
:param node: Node to add
:type node: NodeBase
:param jsonTemplate: serialized representation of node. This used when graph deserialized to do custom stuff after node will be added.
:type jsonTemplate: dict
:rtype: bool
"""
from PyFlow.Core.PathsRegistry import PathsRegistry
assert(node is not None), "failed to add node, None is passed"
if node.uid in self._nodes:
return False
# Check if this node is variable get/set. Variables created in child graphs are not visible to parent ones
# Do not disrupt variable scope
if node.__class__.__name__ in ['getVar', 'setVar']:
var = self.graphManager.findVariableByUid(node.variableUid())
variableLocation = var.location()
if len(variableLocation) > len(self.location()):
return False
if len(variableLocation) == len(self.location()):
if Counter(variableLocation) != Counter(self.location()):
return False
node.graph = weakref.ref(self)
if jsonTemplate is not None:
jsonTemplate['name'] = self.graphManager.getUniqNodeName(jsonTemplate['name'])
else:
node.setName(self.graphManager.getUniqNodeName(node.name))
self._nodes[node.uid] = node
node.postCreate(jsonTemplate)
PathsRegistry().rebuild()
return True
def location(self):
"""Returns path to current location in graph tree
Example:
>>> ["root", "compound1", "compound2"]
means:
>>> # root
>>> # |- compound
>>> # |- compound2
:rtype: list(str)
"""
result = [self.name]
parent = self._parentGraph
while parent is not None:
result.insert(0, parent.name)
parent = parent.parentGraph
return result
def count(self):
"""Returns number of nodes
:rtype: int
"""
return self._nodes.__len__()
def plot(self):
"""Prints graph to console. May be useful for debugging
"""
depth = self.depth()
prefix = "".join(['-'] * depth) if depth > 1 else ''
parentGraphString = str(None) if self.parentGraph is None else self.parentGraph.name
print(prefix + "GRAPH:" + self.name + ", parent:{0}".format(parentGraphString))
assert(self not in self.childGraphs)
for child in self.childGraphs:
child.plot()
class BaseProcess(object):
def __init__(self, new_func=None, total_count=None, *args, **kwargs):
self.func = new_func
self.total_count = total_count
self.count = 0
self.task_queue = []
self.process_list = []
self.process_map = {}
self.task_map = {}
self.args = args
self.kwargs = kwargs
signal.signal(signal.SIGWINCH, self.action)
# self.window = curses.initscr()
self.add_task_signal = Signal(1000)
self.count_signal = Signal(1001)
self.reg_task_signal()
self.reg_count_sinal()
def reg_count_sinal(self):
if not self.total_count:
return
else:
self.count_signal.connect(self.process_count)
def reg_task_signal(self):
self.add_task_signal.connect(self.process_func)
def create_new_task(self, work_num=1):
for i in range(work_num):
self.task_queue.append((self.func, self.args, self.kwargs))
self.add_task_signal.send()
if self.total_count:
for i in range(self.total_count):
self.count_signal.send()
self.process_map = {x: 0 for x in range(work_num)}
def make_func(self):
def add_count_deco(self, func):
def wrapper(func):
@functools.wraps(func)
def _wrapper(*args, **kwargs):
func(*args, **kwargs)
self.count += 1
return _wrapper
return wrapper
@add_count_deco(self,self.func)
def _make_func(*args,**kwargs):
pass
return _make_func
def process_func(self, sender):
while self.task_queue != []:
self.task_queue.pop()
process = multiprocessing.Process(target=self.func, args=self.args, kwargs=self.kwargs)
process.start()
def process_count(self, sender):
self.count += 1
bar_length = 20
percent = float(self.count * 1.0 / self.total_count)
hashes = '#' * int(percent * bar_length)
spaces = ' ' * (bar_length - len(hashes))
multiprocessing.Process(
target=sys.stdout.write("\rPercent: [%s] %d%%" % (hashes + spaces, percent * 100))).start()
def action(self):
key = self.window.getch()
if key == ord('p'):
pass
if key == ord('r'):
pass
def start(self):
while True:
self.action()
class GraphManager(object):
"""Data structure that holds graph tree
This class switches active graph. Can insert or remove graphs to tree,
can search nodes and variables across all graphs. Also this class responsible
for giving unique names.
"""
def __init__(self):
super(GraphManager, self).__init__()
self.terminationRequested = False #: used by cli only
self.graphChanged = Signal(object)
self._graphs = {}
self._activeGraph = None
self._activeGraph = GraphBase(ROOT_GRAPH_NAME, self)
self._activeGraph.setIsRoot(True)
def findRootGraph(self):
"""Returns top level root graph
:rtype: :class:`~PyFlow.Core.GraphBase.GraphBase`
"""
roots = []
for graph in self.getAllGraphs():
if graph.isRoot():
roots.append(graph)
assert (len(roots) == 1), "Fatal! Multiple roots!"
return roots[0]
def selectRootGraph(self):
"""Selects root graph
"""
self.selectGraph(self.findRootGraph())
def serialize(self):
"""Serializes itself to json.
All child graphs will be serialized.
:rtype: dict
"""
rootGraph = self.findRootGraph()
saved = rootGraph.serialize()
saved["fileVersion"] = str(version.currentVersion())
saved["activeGraph"] = self.activeGraph().name
return saved
def removeGraphByName(self, name):
"""Removes graph by :attr:`~PyFlow.Core.GraphBase.GraphBase.name`
:param name: name of graph to be removed
:type name: str
"""
graph = self.findGraph(name)
if graph is not None:
graph.clear()
self._graphs.pop(graph.uid)
if graph.parentGraph is not None:
if graph in graph.parentGraph.childGraphs:
graph.parentGraph.childGraphs.remove(graph)
del graph
def removeGraph(self, graph):
"""Removes supplied graph
:param graph: Graph to be removed
:type graph: :class:`~PyFlow.Core.GraphBase.GraphBase`
"""
if graph.uid in self._graphs:
graph.clear()
self._graphs.pop(graph.uid)
if graph.parentGraph is not None:
if graph in graph.parentGraph.childGraphs:
graph.parentGraph.childGraphs.remove(graph)
del graph
def deserialize(self, data):
"""Populates itself from serialized data
:param data: Serialized data
:type data: dict
"""
if "fileVersion" in data:
fileVersion = version.Version.fromString(data["fileVersion"])
else:
# handle older version
pass
self.clear(keepRoot=False)
self._activeGraph = GraphBase(str('root'), self)
self._activeGraph.populateFromJson(data)
self._activeGraph.setIsRoot(True)
self.selectGraph(self._activeGraph)
def clear(self, keepRoot=True, *args, **kwargs):
"""Wipes everything.
:param keepRoot: Whether to remove root graph or not
:type keepRoot: bool
"""
self.selectGraphByName(ROOT_GRAPH_NAME)
self.removeGraphByName(ROOT_GRAPH_NAME)
self._graphs.clear()
self._graphs = {}
del self._activeGraph
self._activeGraph = None
if keepRoot:
self._activeGraph = GraphBase(ROOT_GRAPH_NAME, self)
self.selectGraph(self._activeGraph)
self._activeGraph.setIsRoot(True)
def Tick(self, deltaTime):
"""Periodically calls :meth:`~PyFlow.Core.GraphBase.GraphBase.Tick` on all graphs
:param deltaTime: Elapsed time from last call
:type deltaTime: float
"""
for graph in self._graphs.values():
graph.Tick(deltaTime)
def findVariableRefs(self, variable):
"""Returns a list of variable accessors spawned across all graphs
:param variable: Variable to search accessors for
:type variable: :class:`~PyFlow.Core.Variable.Variable`
:rtype: list(:class:`~PyFlow.Core.NodeBase.NodeBase`)
"""
result = []
for node in self.getAllNodes(classNameFilters=['getVar', 'setVar']):
if node.variableUid() == variable.uid:
result.append(node)
return result
def findGraph(self, name):
"""Tries to find graph by :attr:`~PyFlow.Core.GraphBase.GraphBase.name`
:param name: Name of target graph
:type name: str
:rtype: :class:`~PyFlow.Core.GraphBase.GraphBase` or None
"""
graphs = self.getGraphsDict()
if name in graphs:
return graphs[name]
return None
def findPinByName(self, pinFullName):
"""Tries to find pin by name across all graphs
:param pinFullName: Full name of pin including node namespace
:type pinFullName: str
:rtype: :class:`~PyFlow.Core.PinBase.PinBase` or None
"""
result = None
for graph in self.getAllGraphs():
result = graph.findPin(pinFullName)
if result is not None:
break
return result
def findNode(self, name):
"""Finds a node across all graphs
:param name: Node name to search by
:type name: str
:rtype: :class:`~PyFlow.Core.NodeBase.NodeBase`
"""
result = None
for graph in self.getAllGraphs():
result = graph.findNode(name)
if result is not None:
break
return result
def findVariableByUid(self, uuid):
"""Finds a variable across all graphs
:param uuid: Variable unique identifier
:type uuid: :class:`~uuid.UUID`
:rtype: :class:`~PyFlow.Core.Variable.Variable` or None
"""
result = None
for graph in self._graphs.values():
if uuid in graph.getVars():
result = graph.getVars()[uuid]
break
return result
def findVariableByName(self, name):
"""Finds a variable across all graphs
:param name: Variable name
:type name: str
:rtype: :class:`~PyFlow.Core.Variable.Variable` or None
"""
for graph in self._graphs.values():
for var in graph.getVars().values():
if var.name == name:
return var
return None
def location(self):
"""Returns location of active graph
.. seealso ::
:meth:`PyFlow.Core.GraphBase.GraphBase.location`
"""
return self.activeGraph().location()
def getGraphsDict(self):
"""Creates and returns dictionary where graph name associated with graph
:rtype: dict(str, :class:`~PyFlow.Core.GraphBase.GraphBase`)
"""
result = {}
for graph in self.getAllGraphs():
result[graph.name] = graph
return result
def add(self, graph):
"""Adds graph to storage and ensures that graph name is unique
:param graph: Graph to add
:type graph: :class:`~PyFlow.Core.GraphBase.GraphBase`
"""
graph.name = self.getUniqGraphName(graph.name)
self._graphs[graph.uid] = graph
def activeGraph(self):
"""Returns active graph
:rtype: :class:`~PyFlow.Core.GraphBase.GraphBase`
"""
return self._activeGraph
def selectGraphByName(self, name):
"""Sets active graph by graph name and fires event
:param name: Name of target graph
:type name: str
"""
graphs = self.getGraphsDict()
if name in graphs:
if name != self.activeGraph().name:
oldGraph = self.activeGraph()
newGraph = graphs[name]
self._activeGraph = newGraph
self.graphChanged.send(self.activeGraph())
def selectGraph(self, graph):
"""Sets supplied graph as active and fires event
:param graph: Target graph
:type graph: :class:`~PyFlow.Core.GraphBase.GraphBase`
"""
for newGraph in self.getAllGraphs():
if newGraph.name == graph.name:
if newGraph.name != self.activeGraph().name:
oldGraph = self.activeGraph()
self._activeGraph = newGraph
self.graphChanged.send(self.activeGraph())
break
def getAllGraphs(self):
"""Returns all graphs
:rtype: list(:class:`~PyFlow.Core.GraphBase.GraphBase`)
"""
return [g for g in self._graphs.values()]
def getAllNodes(self, classNameFilters=[]):
"""Returns all nodes across all graphs
:param classNameFilters: If class name filters specified, only those node classes will be considered
:type classNameFilters: list(str)
:rtype: list(:class:`~PyFlow.Core.NodeBase.NodeBase`)
"""
allNodes = []
for graph in self.getAllGraphs():
if len(classNameFilters) == 0:
allNodes.extend(list(graph.getNodes().values()))
else:
allNodes.extend([
node for node in graph.getNodes().values()
if node.__class__.__name__ in classNameFilters
])
return allNodes
def getAllVariables(self):
"""Returns a list of all variables
:rtype: list(:class:`~PyFlow.Core.Variable.Variable`)
"""
result = []
for graph in self.getAllGraphs():
result.extend(list(graph.getVars().values()))
return result
def getUniqGraphPinName(self, graph, name):
"""Returns unique pin name for graph
Used by compound node and graphInputs graphOutputs nodes.
To make all exposed to compound pins names unique.
:param graph: Target graph
:type graph: :class:`~PyFlow.Core.GraphBase.GraphBase`
:param name: Target pin name
:type name: str
:rtype: str
"""
existingNames = []
for node in graph.getNodesList(
classNameFilters=['graphInputs', 'graphOutputs']):
existingNames.extend([pin.name for pin in node.pins])
return getUniqNameFromList(existingNames, name)
def getAllNames(self):
"""Returns list of all registered names
Includes graphs, nodes, pins, variables names
:rtype: list(str)
"""
existingNames = [g.name for g in self.getAllGraphs()]
existingNames.extend([n.name for n in self.getAllNodes()])
existingNames.extend([var.name for var in self.getAllVariables()])
for node in self.getAllNodes():
existingNames.extend([pin.name for pin in node.pins])
return existingNames
def getUniqName(self, name):
"""Returns unique name
:param name: Source name
:type name: str
:rtype: str
"""
existingNames = self.getAllNames()
return getUniqNameFromList(existingNames, name)
def getUniqGraphName(self, name):
"""Returns unique graph name
:param name: Source name
:type name: str
:rtype: str
"""
existingNames = [g.name for g in self.getAllGraphs()]
return getUniqNameFromList(existingNames, name)
def getUniqNodeName(self, name):
"""Returns unique node name
:param name: Source name
:type name: str
:rtype: str
"""
existingNames = [n.name for n in self.getAllNodes()]
return getUniqNameFromList(existingNames, name)
def getUniqVariableName(self, name):
"""Returns unique variable name
:param name: Source name
:type name: str
:rtype: str
"""
existingNames = [var.name for var in self.getAllVariables()]
return getUniqNameFromList(existingNames, name)
def plot(self):
"""Prints all data to console. May be useful for debugging
"""
root = self.findRootGraph()
print("Active graph: {0}".format(str(self.activeGraph().name)),
"All graphs:", [g.name for g in self._graphs.values()])
root.plot()
class MotionStage(object): def __init__(self, axes, constraints = None): from Action import EmergencyStop from blinker import Signal self.axes_idx = dict() for i, axis in enumerate(axes): self.axes_idx[axis] = i self.axes = [axis for axis in axes] self.constraints = constraints self.abort_action = EmergencyStop(self.axes) self.onCycleStarted = Signal() self.onCycleFinished = Signal() self.onCycleAborted = Signal() self.onDestinationChanged = Signal() self.onRunning = Signal() self.onInitializing = Signal() self.onInitialized = Signal() self.onInitiatorMinus = Signal() self.onInitiatorPlus = Signal() self.onPositionChanged = Signal() for axis in self.axes: axis.onInitializing.connect(self.onInitializing_repeat) axis.onInitialized.connect(self.onInitialized_repeat) axis.onInitiatorMinus.connect(self.onInitiatorMinus_repeat) axis.onInitiatorPlus.connect(self.onInitiatorPlus_repeat) axis.onRunning.connect(self.onRunning_repeat) axis.onPosition.connect(self.onPosition_repeat) self.worker_thread = None self.active = False self.destination = None self.cycle_clear() self.update() def __del__(self): self.abort() def cycle_clear(self): import Queue self.action_queue = Queue.Queue() def cycle_add_action(self, action): if not self.action_queue: self.cycle_clear() self.action_queue.put(action) @property def running(self): return tuple([axis.running for axis in self.axes]) @property def initializing(self): return tuple([axis.initializing for axis in self.axes]) @property def initialized(self): return tuple([axis.initialized for axis in self.axes]) @property def initiator_minus(self): return tuple([axis.initiator_minus for axis in self.axes]) @property def initiator_plus(self): return tuple([axis.initiator_plus for axis in self.axes]) @property def position(self): return tuple([axis.position for axis in self.axes]) def onRunning_repeat(self, sender, running): self.onRunning.send(self, axis=self.axes_idx[sender], running=running) def onPosition_repeat(self, sender, position): self.onPositionChanged.send(self, axis=self.axes_idx[sender], position=position) def onInitializing_repeat(self, sender, initializing): self.onInitializing.send(self, axis=self.axes_idx[sender], initializing=initializing) def onInitialized_repeat(self, sender, initialized): self.onInitialized.send(self, axis=self.axes_idx[sender], initialized=initialized) def onInitiatorMinus_repeat(self, sender, active): self.onInitiatorMinus.send(self, axis=self.axes_idx[sender], active=active) def onInitiatorPlus_repeat(self, sender, active): self.onInitiatorPlus.send(self, axis=self.axes_idx[sender], active=active) def update(self): old_position = self.position for axis in self.axes: axis.update() def set_destination(self, destination): current_position = self.position if not self.destination: self.update() self.destination = current_position if isinstance(destination, list) or isinstance(destination, tuple): if len(destination) != len(self.axes): raise ValueError self.destination = tuple(destination) if isinstance(destination, dict): new_destination = list(self.destination) for k in destination: new_destination[k] = destination[k] self.destination = tuple(new_destination) for i,dest in enumerate(self.destination): self.onDestinationChanged.send(self, axis = i, destination = dest) speed = None if not None in current_position: delta = [abs(a-b) for a,b in zip(self.destination, current_position)] max_delta = max(delta) if max_delta > 0: speed = [float(d)/float(max_delta) for d in delta] from Action import GotoAbsolute self.cycle_clear() self.cycle_add_action(GotoAbsolute(self.axes, self.destination, speed)) def can_cycle_start(self): return True # FIXME: Add constraint tests here def cycle_start(self): import threading, weakref if self.active: return False # if not self.can_cycle_start(): # return False self.current_action = None self.active = True self.worker_thread = threading.Thread(target = MotionStage.cycleWorker, name = "MotionControl.cycleWorker", args=(weakref.proxy(self),)) self.worker_thread.daemon = True self.worker_thread.start() self.onCycleStarted.send(self) def abort(self): import threading self.active = False if isinstance(self.worker_thread, threading.Thread): self.worker_thread.join() def cycleWorker(ref): abort_action = ref.abort_action try: import time while True: if not ref.active: raise CycleAbort() ref.update() if not ref.current_action or ref.current_action.ended(): if ref.action_queue.empty(): break ref.current_action = ref.action_queue.get_nowait() ref.current_action.execute() while True: if not ref.active: raise CycleAbort() ref.update() if ref.current_action.ended(): break ref.action_queue.task_done() ref.onCycleFinished.send(ref) except CycleAbort: ref.abort_action.execute() ref.onCycleAborted.send(ref) finally: try: while not ref.action_queue.empty(): ref.action_queue.get_nowait() ref.action_queue.task_done() except: pass ref.active = False def reference(self): from Action import Initiate, GotoAbsolute self.destination = None self.cycle_clear() self.cycle_add_action(Initiate([self.axes[0]])) self.cycle_add_action(GotoAbsolute([self.axes[0]], [0])) self.cycle_start()
class Axis(object):
def __init__(self, inverted = False, scale={}):
self.inverted = inverted
self.scale = scale
self.position = None
self.running = None
self.initializing = None
self.initialized = None
self.initiator_minus = None
self.initiator_plus = None
self.initiator_error = None
self.temperature_warning = None
self.onPosition = Signal()
self.onStarted = Signal()
self.onStopped = Signal()
self.onInitializing = Signal()
self.onInitialized = Signal()
self.onInitiatorMinus = Signal()
self.onInitiatorPlus = Signal()
self.onInitiatorError = Signal()
self.onTemperatureWarning = Signal()
def update(self):
last_position = self.position
last_running = self.running
last_initializing = self.initializing
last_initialized = self.initialized
last_initiator_minus = self.initiator_minus
last_initiator_plus = self.initiator_plus
last_initiator_error = self.initiator_error
last_temperature_warning = self.temperature_warning
self.do_update()
if last_position != self.position:
self.onPosition.send(position = self.position)
if last_running != self.running:
if self.running:
self.onStarted.send()
else:
self.onStopped.send()
if last_initializing != self.initializing:
self.onInitializing.send(self, initializing = self.initializing)
if last_initialized != self.initialized:
self.onInitialized.send(self, initialized = self.initialized)
if last_initiator_minus != self.initiator_minus:
self.onInitiatorMinus.send(self, active = self.initiator_minus)
if last_initiator_plus != self.initiator_plus:
self.onInitiatorPlus.send(self, active = self.initiator_plus)
if last_initiator_error != self.initiator_error:
self.onInitiatorError.send(self, error = self.initiator_error)
if last_temperature_warning != self.temperature_warning:
self.onTemperatureWarning.send(self, warning = self.temperature_warning)
def wait_for_stop(self):
self.update()
while self.running:
self.update()
def initiate(self):
raise NotImplementedError()
def goto_absolute(self, target, speed = None):
raise NotImplementedError()
def goto_relative(self, offset, speed = None):
raise NotImplementedError()
class DataSource:
"""
The DataSource object provides the data itself to the plots and also manages the brushing between the plots.
If the plots observe the brushed_indices property of this class, they can react to any change in the data.
It is also possible to set the brushed_indices property to trigger the change in any instances that observe
this property. In addition to the brushed indices, this class also provides the brushed data directly, which
is cached to speed up subsequent access to the data.
"""
def __init__(self,
df: DataFrame,
categorical_columns: typing.Union[typing.List[str],
None] = None,
sample: typing.Union[float, int, None] = None,
seed: typing.Union[int, None] = None,
*args,
**kwargs):
"""
:param df: A pandas.DataFrame object.
:param categorical_columns: If given, specifies which columns are to be interpreted as categorical.
Those columns have to include all columns of the DataFrame
which have type `object`, `str`, `bool` or `category`.
This means it can only add columns which do not have the aforementioned types.
:param seed: Random seed used for sampling the data.
Values can be any integer between 0 and 2**32 - 1 inclusive or None.
:param args: args for HasTraits superclass
:param kwargs: kwargs for HasTraits superclass
"""
super().__init__(*args, **kwargs)
validate.validate_data_frame(df)
validate.validate_sample(sample)
validate.validate_seed(seed)
self.selection_type = SelectionType.STANDARD
if sample is None:
self._df = df
else:
if isinstance(sample, float):
if sample < 0.0 or sample > 1.0:
raise ValueError(
"Sample has to be between 0.0 and 1.0. Invalid value : %d"
% sample)
self._df = df.sample(frac=sample, random_state=seed)
else:
if sample < 0 or sample > len(df):
raise ValueError(
"Sample has to be between 0 and the length of the DataFrame (%d). Invalid value: "
"%d" % (len(df), sample))
self._df = df.sample(n=sample, random_state=seed)
self.columns = list(self._df.columns.values)
self.column_store = ColumnStore(self._df, self.columns,
categorical_columns)
self.numerical_columns = self.column_store.numerical_columns
self.time_columns = self.column_store.time_columns
self.categorical_columns = self.column_store.categorical_columns
if self.categorical_columns is not None:
self._df[self.categorical_columns].astype(dtype="category")
self._length = len(self._df)
self._indices = set(range(self._length))
self._brushed_indices: typing.Set[int] = self._indices
self.brushed_data_invalidated = True
self._brushed_data = None
self.on_indices_changed = Signal()
if len(self.columns) < 2:
raise ValueError(
"The passed DataFrame only has %d column, which is insufficient for analysis."
% len(self.columns))
self.few_num_cols = len(self.numerical_columns) < 2
self.few_cat_cols = len(self.categorical_columns) < 2
def notify_indices_changed(self):
# This has the effect that the cached value for brushed_data is being re-indexed once it is needed.
self.brushed_data_invalidated = True
self.on_indices_changed.send(self)
def reset_selection(self):
"""
Reset all the indices to the original state, that is all indices are selected.
:return: None
"""
self._brushed_indices = self._indices
self.notify_indices_changed()
@property
def len(self) -> int:
"""
:return: The length of the DataFrame.
"""
return self._length
def __len__(self):
"""
:return: The length of the DataFrame.
"""
return self._length
@property
def brushed_indices(self) -> typing.Set[int]:
"""
:return: The currently selected indices.
"""
return self._brushed_indices
@brushed_indices.setter
def brushed_indices(self, indices: typing.List[int]):
"""
Sets the specified indices as selection in the data according to the current selection type.
:param indices: indices of data points that should be brushed.
"""
if self.selection_type == SelectionType.STANDARD:
self._brushed_indices = set(indices)
elif self.selection_type == SelectionType.ADDITIVE:
self._brushed_indices = self._brushed_indices.union(indices)
elif self.selection_type == SelectionType.SUBTRACTIVE:
self._brushed_indices = self._brushed_indices.difference(indices)
self.notify_indices_changed()
@property
def brushed_data(self) -> DataFrame:
"""
Only determines brushed data if it was invalidated by new selected indices.
This gives more efficiency if only the brushed indices are needed and not the brushed data.
:return: The selected data corresponding to the indices.
"""
if self.brushed_data_invalidated:
self._brushed_data = self._df.iloc[list(self._brushed_indices), :]
self.brushed_data_invalidated = False
return self._brushed_data
@property
def indices(self) -> typing.Set[int]:
"""
:return: All indices of the data frame. This is a list from 0 to len-1.
"""
return self._indices
@property
def data(self) -> DataFrame:
"""
:return: The DataFrame for this :class:`pandas_visual_analysis.data_source.DataSource` object.
"""
return self._df
@staticmethod
def read_csv(path: str, header: typing.Union[int, None] = 0):
"""
Read a comma-separated values (csv) file into DataSource.
:param path: Any valid string path is acceptable. The string could be a URL.
Valid URL schemes include http, ftp, s3, and file.
:param header: Row (0-indexed) to use for the column labels of the parsed DataFrame.
Use None if there is no header.
:return: The DataSource containing the data from the specified file.
"""
df = pd.read_csv(path, header=header)
return DataSource(df)
@staticmethod
def read_tsv(path: str, header: typing.Union[int, None] = 0):
"""
Read a tab-separated values (tsv) file into DataSource.
:param path: Any valid string path is acceptable. The string could be a URL.
Valid URL schemes include http, ftp, s3, and file.
:param header: Row (0-indexed) to use for the column labels of the parsed DataFrame.
Use None if there is no header.
:return: The DataSource containing the data from the specified file.
"""
df = pd.read_table(path, header=header)
return DataSource(df)
@staticmethod
def read_json(path: str, orient: str):
"""
Read a json file into a DataSource.
:param path: Any valid string path is acceptable. The string could be a URL.
Valid URL schemes include http, ftp, s3, and file.
:param orient: Indication of expected JSON string format produced by DataFrame.to_json()
with a corresponding orient value.
:return: The DataSource containing the data from the specified file.
"""
df = pd.read_json(path, orient=orient)
return DataSource(df)
@staticmethod
def read(path: str, *args, **kwargs):
"""
Reads the data specified by the path into a DataSource. Infers file type by extension.
Supported extensions are: .csv, .tsv and .json.
:param path: Any valid string path is acceptable. The string could be a URL.
Valid URL schemes include http, ftp, s3, and file.
:param args: Arguments passed to inferred methods.
:param kwargs: Keyword arguments passed to inferred methods.
:return: The DataSource containing the data from the specified file.
"""
filename, extension = os.path.splitext(path)
supported_extensions = {".csv", ".tsv", ".json"}
if extension not in supported_extensions:
raise ValueError("The file extension %s is not supported. "
"Supported extensions are: .csv, .tsv, .json. ")
if extension == ".csv":
return DataSource.read_csv(path, *args, **kwargs)
elif extension == ".tsv":
return DataSource.read_tsv(path, *args, **kwargs)
elif extension == ".json":
return DataSource.read_json(path, *args, **kwargs)
# context manager
def __enter__(self):
"""
Enters the context.
:return: Returns self to use as a resource.
"""
return self
def __exit__(self, exc_type, exc_value, traceback):
"""
Exits the context. No resources have to be freed and all Exceptions are delegated.
:param exc_type: Type of any raised Exception.
:param exc_value: Value of any raised Exception.
:param traceback: Traceback if an error occurred.
:return: None
"""
pass # delegate Exceptions
class UploadedFileManager(object):
"""Holds files uploaded by users of the running Streamlit app,
and emits an event signal when a file is added.
"""
def __init__(self):
self._files_by_id = {} # type: Dict[Tuple[str, str], UploadedFileList]
# Prevents concurrent access to the _files_by_id dict.
# In remove_session_files(), we iterate over the dict's keys. It's
# an error to mutate a dict while iterating; this lock prevents that.
self._files_lock = threading.Lock()
self.on_files_added = Signal(
doc="""Emitted when a file list is added to the manager.
Parameters
----------
files : UploadedFileList
The file list that was added.
""")
def add_files(self, session_id, widget_id, files):
"""Add a list of files to the FileManager.
If another list with the same (session_id, widget_id) key exists,
it will be replaced with this one.
The "on_file_added" Signal will be emitted after the list is added.
Parameters
----------
session_id : str
The session ID of the report that owns the files.
widget_id : str
The widget ID of the FileUploader that created the files.
files : List[UploadedFile]
The files to add.
"""
file_list = UploadedFileList(session_id=session_id,
widget_id=widget_id,
files=files)
with self._files_lock:
self._files_by_id[file_list.id] = file_list
self.on_files_added.send(file_list)
def get_files(self, session_id, widget_id):
"""Return the file list with the given ID, or None if the ID doesn't exist.
Parameters
----------
session_id : str
The session ID of the report that owns the file.
widget_id : str
The widget ID of the FileUploader that created the file.
Returns
-------
list of UploadedFile or None
"""
files_id = session_id, widget_id
with self._files_lock:
file_list = self._files_by_id.get(files_id, None)
return file_list.files if file_list is not None else None
def remove_files(self, session_id, widget_id):
"""Remove the file list with the given ID, if it exists.
Parameters
----------
session_id : str
The session ID of the report that owns the file.
widget_id : str
The widget ID of the FileUploader that created the file.
"""
files_id = session_id, widget_id
with self._files_lock:
self._files_by_id.pop(files_id, None)
def remove_session_files(self, session_id):
"""Remove all files that belong to the given report.
Parameters
----------
session_id : str
The session ID of the report whose files we're removing.
"""
# Copy the keys into a list, because we'll be mutating the dictionary.
with self._files_lock:
all_ids = list(self._files_by_id.keys())
for files_id in all_ids:
if files_id[0] == session_id:
self.remove_files(*files_id)
def _send_signal(self, sig: Signal, **data: Any) -> None:
sig.send(self.kuyruk, task=self, **data)
class Organization(WithMetrics, db.Datetimed, db.Document):
name = db.StringField(max_length=255, required=True)
acronym = db.StringField(max_length=128)
slug = db.SlugField(max_length=255, required=True, populate_from='name', update=True)
description = db.StringField(required=True)
url = db.StringField()
image_url = db.StringField()
logo = db.ImageField(fs=avatars, basename=default_image_basename, thumbnails=LOGO_SIZES)
members = db.ListField(db.EmbeddedDocumentField(Member))
teams = db.ListField(db.EmbeddedDocumentField(Team))
requests = db.ListField(db.EmbeddedDocumentField(MembershipRequest))
ext = db.MapField(db.GenericEmbeddedDocumentField())
extras = db.ExtrasField()
deleted = db.DateTimeField()
# TODO: Extract into extension
public_service = db.BooleanField()
meta = {
'allow_inheritance': True,
'indexes': ['-created_at', 'slug'],
'ordering': ['-created_at'],
'queryset_class': OrganizationQuerySet,
}
def __str__(self):
return self.name or ''
__unicode__ = __str__
before_save = Signal()
after_save = Signal()
on_create = Signal()
on_update = Signal()
before_delete = Signal()
after_delete = Signal()
@classmethod
def pre_save(cls, sender, document, **kwargs):
cls.before_save.send(document)
@classmethod
def post_save(cls, sender, document, **kwargs):
cls.after_save.send(document)
if kwargs.get('created'):
cls.on_create.send(document)
else:
cls.on_update.send(document)
@property
def display_url(self):
return url_for('organizations.show', org=self)
@property
def external_url(self):
return url_for('organizations.show', org=self, _external=True)
@property
def pending_requests(self):
return [r for r in self.requests if r.status == 'pending']
@property
def refused_requests(self):
return [r for r in self.requests if r.status == 'refused']
@property
def accepted_requests(self):
return [r for r in self.requests if r.status == 'accepted']
def member(self, user):
for member in self.members:
if member.user == user:
return member
return None
def is_member(self, user):
return self.member(user) is not None
def is_admin(self, user):
member = self.member(user)
return member is not None and member.role == 'admin'
def pending_request(self, user):
for request in self.requests:
if request.user == user and request.status == 'pending':
return request
return None
@classmethod
def get(cls, id_or_slug):
obj = cls.objects(slug=id_or_slug).first()
return obj or cls.objects.get_or_404(id=id_or_slug)
def by_role(self, role):
return filter(lambda m: m.role == role, self.members)
def __init__(self, name, default, description='No description available'):
"""Create new value"""
self.__name = name
self.__value = self.__default = self.convert(default)
self.__description = description
self.__on_change = Signal()
class PinBase(IPin):
"""
**Base class for pins**
This is the base class that stores the data in the graph.
This class is intended to be subclassed for each new registered data type you want to create.
:param _packageName: This holds the package where the sub classed pin is registered.
It is not intended to be set by developer, PyFlow automatically fills this property at
registration point
:type _packageName: str
Signals:
* **serializationHook** : Fired when Serialize Pin called, so Ui wrapers can append data to the serialization object
* **onPinConnected** : Fired when a new connection is made to this Pin, sends other Pin
* **onPinDisconnected** : Fired when some disconnection is made to this Pin, sends other Pin
* **nameChanged** : Fired when pin.setName() called, sends New Name
* **killed** : Fired when Pin gets deleted
* **onExecute** : Fired when Pin execution gets called
* **containerTypeChanged** : Fired when Pin Structure Changes
* **dataBeenSet** : Fired when data changes, sends New Data
* **dictChanged** : Fired when current structure changes to :py:const:`PyFlow.Core.Common.StructureType.Dict`, sends Dict key DataType
* **errorOccurred** : Fired when some error fired, like incorrect dataType set, sends ocurred Error
* **errorCleared** : Fired when error cleared
:ivar owningNode: Weak reference to owning node
:ivar reconnectionPolicy: What to do if connect with busy pin. Used when :attr:`~PyFlow.Core.Common.PinOptions.AllowMultipleConnections` flag is disabled
:ivar dirty: This flag for lazy evaluation
:ivar affects: List of pins this pin affects to
:ivar affected_by: List of pins that affects to this pin
:ivar name: Pin name
:ivar direction: Pin direction
:ivar inputWidgetVariant: Input widget variant tag
:ivar constraint: **description here**
:ivar structConstraint: **description here**
:ivar super: **description here**
:ivar activeDataType: Current data type of this pin. Used by AnyPin
:ivar pinIndex: Position of this pin on node
:ivar description: Text description of this pin
"""
_packageName = ""
def __init__(self, name, owningNode, direction):
super(PinBase, self).__init__()
# signals
self.serializationHook = Signal()
self.onPinConnected = Signal(object)
self.onPinDisconnected = Signal(object)
self.nameChanged = Signal(str)
self.killed = Signal()
self.onExecute = Signal(object)
self.containerTypeChanged = Signal()
self.dataBeenSet = Signal(object)
self.dictChanged = Signal(str)
self.markedAsDirty = Signal()
self.errorOccured = Signal(object)
self.errorCleared = Signal()
self._lastError = None
## Access to the node
self.owningNode = weakref.ref(owningNode)
self._uid = uuid.uuid4()
self._data = None
self._defaultValue = None
self.reconnectionPolicy = PinReconnectionPolicy.DisconnectIfHasConnections
self.dirty = True
self.affects = set()
self.affected_by = set()
self.name = name
self._group = ""
self.direction = direction
# gui class weak ref
self._wrapper = None
self.__wrapperJsonData = None
self.annotationDescriptionDict = None
self._inputWidgetVariant = "DefaultWidget"
# Constraint ports
self.constraint = None
self.structConstraint = None
# Flags
self._flags = PinOptions.Storable
self._origFlags = self._flags
self._structure = StructureType.Single
self._currStructure = self._structure
self._isAny = False
self._isArray = False
self._isDict = False
self._alwaysList = False
self._alwaysDict = False
self._alwaysSingle = False
self._defaultSupportedDataTypes = self._supportedDataTypes = self.supportedDataTypes(
)
self.canChange = False
self._isDictElement = False
self.hidden = False
# DataTypes
self.super = self.__class__
self.activeDataType = self.__class__.__name__
self._keyType = None
# registration
self.owningNode().pins.add(self)
self.owningNode().pinsCreationOrder[self.uid] = self
# This is for to be able to connect pins by location on node
self.pinIndex = 0
if direction == PinDirection.Input:
self.pinIndex = len(self.owningNode().orderedInputs)
if direction == PinDirection.Output:
self.pinIndex = len(self.owningNode().orderedOutputs)
self.description = "{} instance".format(self.dataType)
@property
def wrapperJsonData(self):
try:
dt = self.__wrapperJsonData.copy()
return dt
except Exception as e:
return None
def getInputWidgetVariant(self):
return self._inputWidgetVariant
def setInputWidgetVariant(self, value):
self._inputWidgetVariant = value
def path(self):
owningNodePath = self.owningNode().path()
return "{}.{}".format(owningNodePath, self.getName())
@property
def group(self):
"""Pin group
This is just a tag which can be used in ui level
:rtype: str
"""
return self._group
@group.setter
def group(self, value):
self._group = str(value)
def enableOptions(self, *options):
"""Enables flags on pin instance
Example:
>>> self.pinInstance.enableOptions(PinOptions.RenamingEnabled)
You can also pass array/set of flags
>>> self.pinInstance.enableOptions({PinOptions.RenamingEnabled, PinOptions.Dynamic})
This is equivalent of
>>> self.pinInstance.enableOptions(PinOptions.RenamingEnabled | PinOptions.Dynamic)
"""
for option in options:
self._flags = self._flags | option
self._origFlags = self._flags
def disableOptions(self, *options):
"""Same as :meth:`~PyFlow.Core.PinBase.PinBase.enableOptions` but inverse
"""
for option in options:
self._flags = self._flags & ~option
self._origFlags = self._flags
def optionEnabled(self, option):
"""Is option enabled or not
:param option: Option to check
:type option: :class:`~PyFlow.Core.Common.PinOptions`
:rtype: bool
"""
return bool(self._flags & option)
def isAny(self):
"""Wheter this pin of type Any or not
:rtype: bool
"""
return self._isAny
@property
def packageName(self):
"""Returns name of package this pin belongs to
:rtype: bool
"""
return self._packageName
@property
def linkedTo(self):
"""store connection from pins
from left hand side to right hand side
.. code-block:: python
{
"lhsNodeName": "", "outPinId": 0,
"rhsNodeName": "", "inPinId": 0
}
where pin id is order in which pin was added to node
:returns: Serialized connections
:rtype: list(dict)
"""
result = list()
if self.direction == PinDirection.Output:
for i in getConnectedPins(self):
connection = {
"lhsNodeName": "",
"outPinId": 0,
"rhsNodeName": "",
"inPinId": 0
}
connection["lhsNodeName"] = self.owningNode().getName()
connection["lhsNodeUid"] = str(self.owningNode().uid)
connection["outPinId"] = self.pinIndex
connection["rhsNodeName"] = i.owningNode().getName()
connection["rhsNodeUid"] = str(i.owningNode().uid)
connection["inPinId"] = i.pinIndex
result.append(connection)
if self.direction == PinDirection.Input:
for i in getConnectedPins(self):
connection = {
"lhsNodeName": "",
"outPinId": 0,
"rhsNodeName": "",
"inPinId": 0
}
connection["lhsNodeName"] = i.owningNode().getName()
connection["lhsNodeUid"] = str(i.owningNode().uid)
connection["outPinId"] = i.pinIndex
connection["rhsNodeName"] = self.owningNode().getName()
connection["rhsNodeUid"] = str(self.owningNode().uid)
connection["inPinId"] = self.pinIndex
result.append(connection)
return result
def __repr__(self):
return "[{0}:{1}:{2}:{3}]".format(self.dataType, self.getFullName(),
self.dirty, self.currentData())
def isExec(self):
"""Returns whether this is exec pin or not
:rtype: bool
"""
return False
def initAsArray(self, bIsArray):
"""Sets this pins to be a list always
:param bIsArray: Define as array
:type bIsArray: bool
"""
self._alwaysList = bool(bIsArray)
if bool(bIsArray):
self._alwaysDict = False
self.setAsArray(bool(bIsArray))
def initAsDict(self, bIsDict):
"""Sets this pins to be a dict always
:param bIsArray: Define as dict
:type bIsArray: bool
"""
self._alwaysDict = bool(bIsDict)
if bool(bIsDict):
self._alwaysList = False
self.setAsDict(bool(bIsDict))
def setAsArray(self, bIsArray):
"""Sets this pins to be a list
:param bIsArray: Define as Array
:type bIsArray: bool
"""
bIsArray = bool(bIsArray)
if self._isArray == bIsArray:
return
self._isArray = bIsArray
if bIsArray:
if self.isDict():
self.setAsDict(False)
# list pins supports only lists by default
self.enableOptions(PinOptions.SupportsOnlyArrays)
self._currStructure = StructureType.Array
self._isDict = False
else:
self._currStructure = self._structure
self._data = self.defaultValue()
self.containerTypeChanged.send()
def setAsDict(self, bIsDict):
"""Sets this pins to be a dict
:param bIsArray: Define as Array
:type bIsArray: bool
"""
bIsDict = bool(bIsDict)
if self._isDict == bIsDict:
return
self._isDict = bIsDict
if bIsDict:
if self.isArray():
self.setAsArray(False)
# list pins supports only lists by default
self.enableOptions(PinOptions.SupportsOnlyArrays)
self._currStructure = StructureType.Dict
self._isArray = False
else:
self._currStructure = self._structure
self._keyType = None
self._data = self.defaultValue()
self.containerTypeChanged.send()
def isArray(self):
"""Returns whether this pin is array or not
:rtype: bool
"""
return self._isArray
def isDict(self):
"""Returns whether this pin is dict or not
:rtype: bool
"""
return self._isDict
def setWrapper(self, wrapper):
"""Sets ui wrapper instance
:param wrapper: Whatever ui class that represents this pin
"""
if self._wrapper is None:
self._wrapper = weakref.ref(wrapper)
def getWrapper(self):
"""Returns ui wrapper instance
"""
return self._wrapper
def deserialize(self, jsonData):
"""Restores itself from supplied serialized data
:param jsonData: Json representation of pin
:type jsonData: dict
"""
self.setName(jsonData["name"])
self.uid = uuid.UUID(jsonData['uuid'])
for opt in PinOptions:
if opt.value in jsonData["options"]:
self.enableOptions(opt)
else:
self.disableOptions(opt)
self.changeStructure(jsonData["structure"])
self._alwaysList = jsonData['alwaysList']
self._alwaysSingle = jsonData['alwaysSingle']
self._alwaysDict = jsonData['alwaysDict']
try:
self.setData(
json.loads(jsonData['value'], cls=self.jsonDecoderClass()))
except Exception as e:
self.setData(self.defaultValue())
if "wrapper" in jsonData:
self.__wrapperJsonData = jsonData["wrapper"]
def serialize(self):
"""Serializes itself to json
:rtype: dict
"""
storable = self.optionEnabled(PinOptions.Storable)
serializedData = None
if not self.dataType == "AnyPin":
if storable:
serializedData = json.dumps(self.currentData(),
cls=self.jsonEncoderClass())
#else:
# serializedData = json.dumps(self.defaultValue(), cls=self.jsonEncoderClass())
data = {
'name': self.name,
'package': self.packageName,
'fullName': self.getFullName(),
'dataType': self.__class__.__name__,
'direction': int(self.direction),
'value': serializedData,
'uuid': str(self.uid),
'linkedTo': list(self.linkedTo),
'pinIndex': self.pinIndex,
'options': [i.value for i in PinOptions if self.optionEnabled(i)],
'structure': int(self._currStructure),
'alwaysList': self._alwaysList,
'alwaysSingle': self._alwaysSingle,
'alwaysDict': self._alwaysDict
}
# Wrapper class can subscribe to this signal and return
# UI specific data which will be considered on serialization
# Blinker returns a tuple (receiver, return val)
wrapperData = self.serializationHook.send(self)
if wrapperData is not None:
if len(wrapperData) > 0:
# We take return value from one wrapper
data['wrapper'] = wrapperData[0][1]
return data
@property
def uid(self):
return self._uid
@uid.setter
def uid(self, value):
if not value == self._uid:
self._uid = value
def setName(self, name, force=False):
"""Sets pin name and fires events
:param name: New pin name
:type name: str
:param force: If True - name will be changed even if option :attr:`~PyFlow.Core.Common.PinOptions.RenamingEnabled` is turned off
:type force: bool
:returns: Whether renaming performed or not
:rtype: bool
"""
if not force:
if not self.optionEnabled(PinOptions.RenamingEnabled):
return False
if name == self.name:
return False
self.name = self.owningNode().getUniqPinName(name)
self.nameChanged.send(self.name)
return True
def getName(self):
return self.name
def getFullName(self):
"""Returns full pin name, including node name
:rtype: str
"""
return self.owningNode().name + '_' + self.name
def allowedDataTypes(self,
checked=[],
dataTypes=[],
selfCheck=True,
defaults=False):
return list(self.supportedDataTypes())
def checkFree(self, checked=[], selfCheck=True):
return False
def defaultValue(self):
"""Returns default value of this pin
"""
if self.isArray():
return []
elif self.isDict():
return PFDict("StringPin", "AnyPin")
else:
return self._defaultValue
def getData(self):
"""Returns pin value
If something is connected to this pin, graph will be evaluated
.. seealso:: :class:`~PyFlow.Core.EvaluationEngine.DefaultEvaluationEngine_Impl`
"""
return EvaluationEngine().getPinData(self)
def clearError(self):
"""Clears any last error on this pin and fires event
"""
if self._lastError is not None:
self._lastError = None
self.errorCleared.send()
def setError(self, err):
"""Marks this pin as invalid by setting error message to it. Also fires event
:param err: Error message
:type err: str
"""
self._lastError = str(err)
self.errorOccured.send(self._lastError)
def validateArray(self, array, func):
valid = True
if isinstance(array, list):
for i in array:
self.validateArray(i, func)
else:
func(array)
return valid
def setData(self, data):
"""Sets value to pin
:param data: Data to be set
:type data: object
"""
if self.super is None:
return
try:
self.setDirty()
if isinstance(data, DictElement) and not self.optionEnabled(
PinOptions.DictElementSupported):
data = data[1]
if not self.isArray() and not self.isDict():
if isinstance(data, DictElement):
self._data = DictElement(data[0],
self.super.processData(data[1]))
else:
if isinstance(data, list):
self._data = data
else:
self._data = self.super.processData(data)
elif self.isArray():
if isinstance(data, list):
if self.validateArray(data, self.super.processData):
self._data = data
else:
raise Exception("Some Array Input is not valid Data")
else:
self._data = [self.super.processData(data)]
elif self.isDict():
if isinstance(data, PFDict):
self._data = PFDict(data.keyType, data.valueType)
for key, value in data.items():
self._data[key] = self.super.processData(value)
elif isinstance(data, DictElement) and len(data) == 2:
self._data.clear()
self._data[data[0]] = self.super.processData(data[1])
if self.direction == PinDirection.Output:
for i in self.affects:
i.setData(self.currentData())
elif self.direction == PinDirection.Input and self.owningNode(
).__class__.__name__ == "compound":
for i in self.affects:
i.setData(self.currentData())
if self.direction == PinDirection.Input or self.optionEnabled(
PinOptions.AlwaysPushDirty):
push(self)
self.clearError()
self.dataBeenSet.send(self)
except Exception as exc:
self.setError(exc)
self.setDirty()
if self._lastError is not None:
self.owningNode().setError(self._lastError)
wrapper = self.owningNode().getWrapper()
if wrapper:
wrapper.update()
def call(self, *args, **kwargs):
if self.owningNode().isValid():
self.onExecute.send(*args, **kwargs)
def disconnectAll(self):
if self.direction == PinDirection.Input:
for o in list(self.affected_by):
disconnectPins(self, o)
self.affected_by.clear()
if self.direction == PinDirection.Output:
for i in list(self.affects):
disconnectPins(self, i)
self.affects.clear()
@property
def dataType(self):
"""Returns data type of this pin
:rtype: str
"""
return self.__class__.__name__
@property
def structureType(self):
"""Returns current structure of this pin
:rtype: :class:`~PyFlow.Core.Common.StructureType`
"""
return self._structure
@structureType.setter
def structureType(self, structure):
self._structure = structure
self._currStructure = structure
# PinBase methods
def kill(self, *args, **kwargs):
"""Deletes this pin
"""
self.disconnectAll()
if self in self.owningNode().pins:
self.owningNode().pins.remove(self)
if self.uid in self.owningNode().pinsCreationOrder:
self.owningNode().pinsCreationOrder.pop(self.uid)
# Fix pin indexes on owning node
if self.optionEnabled(PinOptions.Dynamic):
# sort owning node pins indexes
index = 1
if self.direction == PinDirection.Input:
for inputPin in self.owningNode().orderedInputs.values():
if inputPin == self:
continue
inputPin.pinIndex = index
index += 1
index = 1
if self.direction == PinDirection.Output:
for outputPin in self.owningNode().orderedOutputs.values():
if outputPin == self:
continue
outputPin.pinIndex = index
index += 1
self.killed.send(self)
clearSignal(self.killed)
def currentData(self):
"""Returns current value of this pin, without any graph evaluation
:rtype: object
"""
if self._data is None:
return self._defaultValue
return self._data
def aboutToConnect(self, other):
"""This method called right before two pins connected
:param other: Pin which this pin is going to be connected with
:type other: :class:`~PyFlow.Core.PinBase.PinBase`
"""
if other.structureType != self.structureType:
if self.optionEnabled(
PinOptions.ChangeTypeOnConnection
) or self.structureType == StructureType.Multi:
self.changeStructure(other._currStructure)
self.onPinConnected.send(other)
def getCurrentStructure(self):
"""Returns this pin structure type
:rtype: :class:`~PyFlow.Core.Common.StructureType`
"""
if self.structureType == StructureType.Multi:
if self._alwaysSingle:
return StructureType.Single
elif self._alwaysList:
return StructureType.Array
elif self._alwaysDict:
return StructureType.Dict
else:
return self.structureType
else:
return self.structureType
def changeStructure(self, newStruct, init=False):
"""Changes this pin structure type
:param newStruct: Target structure
:type newStruct: :class:`~PyFlow.Core.Common.StructureType`
:param init: **docs goes here**
:type init: bool
"""
free = self.canChangeStructure(newStruct, [], init=init)
if free:
self.updateConstrainedPins(set(), newStruct, init, connecting=True)
def canChangeStructure(self,
newStruct,
checked=[],
selfCheck=True,
init=False):
"""Recursive function to determine if pin can change its structure
:param newStruct: New structure we want to apply
:type newStruct: string
:param checked: Already visited pins, defaults to []
:type checked: list, optional
:param selfCheck: Define if check pin itself for connected pins, defaults to True
:type selfCheck: bool, optional
:param init: Initialization flag, if set multi pins can became other structure and don't be able to change after new call with init=True, defaults to False
:type init: bool, optional
:returns: True if pin can change structure to newStruct
:rtype: bool
"""
if not init and (self._alwaysList or self._alwaysSingle
or self._alwaysDict):
return False
if self.structConstraint is None or self.structureType == StructureType.Multi:
return True
elif self.structureType != StructureType.Multi:
return False
else:
con = []
if selfCheck:
free = not self.hasConnections()
if not free:
for c in getConnectedPins(self):
if c not in checked:
con.append(c)
else:
free = True
checked.append(self)
free = True
if selfCheck:
def testfree():
free = False
for pin in getConnectedPins(self):
if pin._structure == StructureType.Multi:
free = True
else:
free = False
break
return free
if any([
self._currStructure == StructureType.Single
and newStruct == StructureType.Array
and not self.optionEnabled(PinOptions.ArraySupported)
and self.hasConnections(),
self._currStructure == StructureType.Single
and newStruct == StructureType.Dict
and not self.optionEnabled(PinOptions.DictSupported)
and self.hasConnections(),
self._currStructure == StructureType.Array
and newStruct == StructureType.Single
and self.optionEnabled(PinOptions.SupportsOnlyArrays)
and self.hasConnections(),
self._currStructure == StructureType.Dict
and newStruct == StructureType.Single
and self.optionEnabled(PinOptions.SupportsOnlyArrays)
and self.hasConnections(),
self._currStructure == StructureType.Array
and newStruct == StructureType.Dict
and self.hasConnections(),
self._currStructure == StructureType.Dict
and newStruct == StructureType.Array
and self.hasConnections()
]):
free = testfree()
if free:
for port in self.owningNode().structConstraints[
self.structConstraint] + con:
if port not in checked:
checked.append(port)
free = port.canChangeStructure(newStruct,
checked,
True,
init=init)
if not free:
break
return free
def updateConstrainedPins(self,
traversed,
newStruct,
init=False,
connecting=False):
nodePins = set()
if self.structConstraint is not None:
nodePins = set(
self.owningNode().structConstraints[self.structConstraint])
else:
nodePins = set([self])
for connectedPin in getConnectedPins(self):
if connectedPin.structureType == StructureType.Multi:
if connectedPin.canChangeStructure(self._currStructure,
init=init):
nodePins.add(connectedPin)
for neighbor in nodePins:
if neighbor not in traversed:
neighbor.setAsArray(newStruct == StructureType.Array)
neighbor.setAsDict(newStruct == StructureType.Dict)
if connecting:
if init:
neighbor._alwaysList = newStruct == StructureType.Array
neighbor._alwaysSingle = newStruct == StructureType.Single
neighbor._alwaysDict = newStruct == StructureType.Dict
neighbor._currStructure = newStruct
neighbor.disableOptions(PinOptions.ArraySupported)
neighbor.disableOptions(PinOptions.DictSupported)
if newStruct == StructureType.Array:
neighbor.enableOptions(PinOptions.ArraySupported)
elif newStruct == StructureType.Dict:
neighbor.enableOptions(PinOptions.DictSupported)
elif newStruct == StructureType.Multi:
neighbor.enableOptions(PinOptions.ArraySupported)
neighbor.enableOptions(PinOptions.DictSupported)
elif newStruct == StructureType.Single:
neighbor.disableOptions(PinOptions.SupportsOnlyArrays)
else:
neighbor._currStructure = neighbor._structure
neighbor._data = neighbor.defaultValue()
traversed.add(neighbor)
neighbor.setData(neighbor.defaultValue())
neighbor.updateConstrainedPins(traversed,
newStruct,
init,
connecting=connecting)
def pinConnected(self, other):
push(self)
if self.isDict():
self.updateConnectedDicts([], self._data.keyType)
def pinDisconnected(self, other):
self.onPinDisconnected.send(other)
push(other)
def canChangeTypeOnConnection(self,
checked=[],
can=True,
extraPins=[],
selfCheck=True):
"""Recursive function to determine if pin can change its dataType
:param checked: Already visited pins, defaults to []
:type checked: list, optional
:param can: Variable Updated during iteration, defaults to True
:type can: bool, optional
:param extraPins: extra pins, non constrained or connected to this pin but that want to check also, defaults to []
:type extraPins: list, optional
:param selfCheck: Define if check pin itself for connected pins, defaults to True
:type selfCheck: bool, optional
:returns: True if pin can becabe other dataType
:rtype: bool
"""
if not self.optionEnabled(PinOptions.ChangeTypeOnConnection):
return False
con = []
neis = []
if selfCheck:
if self.hasConnections():
for c in getConnectedPins(self):
if c not in checked:
con.append(c)
else:
checked.append(self)
if self.constraint:
neis = self.owningNode().constraints[self.constraint]
for port in neis + con + extraPins:
if port not in checked and can:
checked.append(port)
can = port.canChangeTypeOnConnection(checked,
can,
selfCheck=True)
return can
def getDictElementNode(self, checked=[], node=None):
"""Get the connected :py:class:`PyFlow.Packages.PyFlowBase.Nodes.makeDictElement.makeDictElement` to this pin recursively
:param checked: Currently visited pins, defaults to []
:type checked: list, optional
:param node: founded node, defaults to None
:rtype: :class:`~PyFlow.Core.NodeBase.NodeBase` or None
"""
if self.owningNode().__class__.__name__ == "makeDictElement":
return self.owningNode()
con = []
neis = []
if self.hasConnections() and self.direction == PinDirection.Input:
for c in getConnectedPins(self):
if c not in checked:
con.append(c)
if self.constraint:
neis = self.owningNode().constraints[self.constraint]
for port in con + neis:
if port not in checked and node == None:
checked.append(port)
node = port.getDictElementNode(checked, node)
return node
def getDictNode(self, checked=[], node=None):
"""Get the connected :py:class:`PyFlow.Packages.PyFlowBase.Nodes.makeDict.makeDict` or
:py:class:`PyFlow.Packages.PyFlowBase.Nodes.makeAnyDict.makeAnyDict` to this pin recursively
:param checked: Currently visited pins, defaults to []
:type checked: list, optional
:param node: founded node, defaults to None
:returns: founded node or None if not found
"""
if self.owningNode().__class__.__name__ in ["makeDict", "makeAnyDict"]:
return self.owningNode()
con = []
neis = []
if self.hasConnections():
for c in getConnectedPins(self):
if c not in checked:
con.append(c)
if self.constraint:
neis = self.owningNode().constraints[self.constraint]
for port in con + neis:
if port not in checked and node == None:
checked.append(port)
node = port.getDictNode(checked, node)
return node
def supportDictElement(self, checked=[], can=True, selfCheck=True):
"""Iterative functions that search in all connected pins to see if they support DictElement nodes.
:param checked: Already visited pins, defaults to []
:type checked: list, optional
:param can: this is the variable that will be actualized during the recursive function, defaults to False
:type can: bool, optional
:param selfCheck: Define if look itself or no, defaults to True
:type selfCheck: bool, optional
:returns: True if can connect DictElement nodes to this pin
:rtype: bool
"""
if not self.optionEnabled(PinOptions.DictElementSupported):
return False
con = []
neis = []
if selfCheck:
if self.hasConnections() and self.direction == PinDirection.Input:
for c in getConnectedPins(self):
if c not in checked:
con.append(c)
else:
checked.append(self)
if self.constraint and self.owningNode(
).__class__.__name__ != "makeDictElement":
neis = self.owningNode().constraints[self.constraint]
for port in neis + con:
if port not in checked and can:
checked.append(port)
can = port.supportDictElement(checked, can, selfCheck=True)
return can
def supportOnlyDictElement(self, checked=[], can=False, selfCheck=True):
"""Iterative Functions that search in all connected pins to see if they support only DictElement nodes, this
is done for nodes like makeDict and simmilars.
:param checked: Already Visited Pins, defaults to []
:type checked: list, optional
:param can: this is the variable that will be actualized during the recursive function, defaults to False
:type can: bool, optional
:param selfCheck: Defines if look itself or no, defaults to True
:type selfCheck: bool, optional
:returns: True if can connect only DictElement and Dicts nodes to this Pin
:rtype: bool
"""
if self.isDict():
return True
con = []
neis = []
if selfCheck:
if self.hasConnections() and self.direction == PinDirection.Output:
for c in getConnectedPins(self):
if c not in checked:
con.append(c)
else:
checked.append(self)
if self.constraint and self.owningNode(
).__class__.__name__ != "makeDictElement":
neis = self.owningNode().constraints[self.constraint]
for port in neis + con:
if port not in checked and not can:
checked.append(port)
can = port.supportOnlyDictElement(checked, can, selfCheck=True)
return can
def updateConnectedDicts(self, checked=[], keyType=None):
"""Iterate over connected dicts pins and DictElements pins updating key data type
:param checked: Already visited pins, defaults to []
:type checked: list, optional
:param keyType: KeyDataType to set, defaults to None
:type keyType: string, optional
"""
if not self.isDict():
return
con = []
neis = []
if self.hasConnections():
for c in getConnectedPins(self):
if c not in checked:
con.append(c)
if self.constraint:
neis = self.owningNode().constraints[self.constraint]
for port in con + neis:
if port not in checked and port.isDict():
checked.append(port)
port._keyType = keyType
if port._data.keyType != keyType:
port._data = PFDict(keyType, port.dataType)
port.dictChanged.send(keyType)
if port.getWrapper():
port.getWrapper()().update()
port.updateConnectedDicts(checked, keyType)
def setClean(self):
"""Sets dirty flag to True
"""
self.dirty = False
if self.direction == PinDirection.Output:
for i in self.affects:
i.dirty = False
def setDirty(self):
"""Sets dirty flag to True
"""
if self.isExec():
return
self.dirty = True
for i in self.affects:
i.dirty = True
self.markedAsDirty.send()
def hasConnections(self):
"""Return the number of connections this pin has
:rtype: int
"""
numConnections = 0
if self.direction == PinDirection.Input:
numConnections += len(self.affected_by)
elif self.direction == PinDirection.Output:
numConnections += len(self.affects)
return numConnections > 0
def setDefaultValue(self, val):
"""In python, all user-defined classes are mutable
So make sure to store separate copy of value
For example if this is a Matrix, default value will be changed each time data has been set in original Matrix
:param val: defaultValue
:type val: object
"""
self._defaultValue = copy(val)
def updateConstraint(self, constraint):
self.constraint = constraint
if constraint in self.owningNode().constraints:
self.owningNode().constraints[constraint].append(self)
else:
self.owningNode().constraints[constraint] = [self]
def updateStructConstraint(self, constraint):
self.structConstraint = constraint
if constraint in self.owningNode().structConstraints:
self.owningNode().structConstraints[constraint].append(self)
else:
self.owningNode().structConstraints[constraint] = [self]
@staticmethod
def IsValuePin():
"""Returns whether this pin is value pin or not
:rtype: bool
"""
return True
@staticmethod
def pinDataTypeHint():
"""Hint of what data type is this pin, as well as default value for this data type.
Used to easily find pin classes by type id.
:rtype: tuple(str, object)
:raises NotImplementedError: If not implemented
"""
raise NotImplementedError(
'pinDataTypeHint method of PinBase is not implemented')
@staticmethod
def supportedDataTypes():
return ()
@staticmethod
def jsonEncoderClass():
"""Returns json encoder class for this pin
"""
return json.JSONEncoder
@staticmethod
def jsonDecoderClass():
"""Returns json decoder class for this pin
"""
return json.JSONDecoder
def __init__(self, name, event_type, send_to_interfaces=True, message=''):
self.name = name
self.signal = Signal(name)
self.event_type = event_type
self.is_sent_to_interfaces = send_to_interfaces
self.message = message
def __init__(self, name, owningNode, direction):
super(PinBase, self).__init__()
# signals
self.serializationHook = Signal()
self.onPinConnected = Signal(object)
self.onPinDisconnected = Signal(object)
self.nameChanged = Signal(str)
self.killed = Signal()
self.onExecute = Signal(object)
self.containerTypeChanged = Signal()
self.dataBeenSet = Signal(object)
self.dictChanged = Signal(str)
self.markedAsDirty = Signal()
self.errorOccured = Signal(object)
self.errorCleared = Signal()
self._lastError = None
## Access to the node
self.owningNode = weakref.ref(owningNode)
self._uid = uuid.uuid4()
self._data = None
self._defaultValue = None
self.reconnectionPolicy = PinReconnectionPolicy.DisconnectIfHasConnections
self.dirty = True
self.affects = set()
self.affected_by = set()
self.name = name
self._group = ""
self.direction = direction
# gui class weak ref
self._wrapper = None
self.__wrapperJsonData = None
self.annotationDescriptionDict = None
self._inputWidgetVariant = "DefaultWidget"
# Constraint ports
self.constraint = None
self.structConstraint = None
# Flags
self._flags = PinOptions.Storable
self._origFlags = self._flags
self._structure = StructureType.Single
self._currStructure = self._structure
self._isAny = False
self._isArray = False
self._isDict = False
self._alwaysList = False
self._alwaysDict = False
self._alwaysSingle = False
self._defaultSupportedDataTypes = self._supportedDataTypes = self.supportedDataTypes(
)
self.canChange = False
self._isDictElement = False
self.hidden = False
# DataTypes
self.super = self.__class__
self.activeDataType = self.__class__.__name__
self._keyType = None
# registration
self.owningNode().pins.add(self)
self.owningNode().pinsCreationOrder[self.uid] = self
# This is for to be able to connect pins by location on node
self.pinIndex = 0
if direction == PinDirection.Input:
self.pinIndex = len(self.owningNode().orderedInputs)
if direction == PinDirection.Output:
self.pinIndex = len(self.owningNode().orderedOutputs)
self.description = "{} instance".format(self.dataType)
class Axis(object):
def __init__(self, limits=None, scale={}):
from blinker import Signal
self.limits = limits
self.scale = scale
self.position = None
self.running = None
self.initializing = None
self.initialized = None
self.initiator_minus = None
self.initiator_plus = None
self.initiator_error = None
self.temperature_warning = None
self.onPosition = Signal()
self.onRunning = Signal()
self.onInitializing = Signal()
self.onInitialized = Signal()
self.onInitiatorMinus = Signal()
self.onInitiatorPlus = Signal()
self.onInitiatorError = Signal()
self.onTemperatureWarning = Signal()
def update(self):
last_position = self.position
last_running = self.running
last_initializing = self.initializing
last_initialized = self.initialized
last_initiator_minus = self.initiator_minus
last_initiator_plus = self.initiator_plus
last_initiator_error = self.initiator_error
last_temperature_warning = self.temperature_warning
self.do_update()
if last_position != self.position:
self.onPosition.send(self, position=self.position)
if last_running != self.running:
self.onRunning.send(self, running=self.running)
if last_initializing != self.initializing:
self.onInitializing.send(self, initializing=self.initializing)
if last_initialized != self.initialized:
self.onInitialized.send(self, initialized=self.initialized)
if last_initiator_minus != self.initiator_minus:
self.onInitiatorMinus.send(self, active=self.initiator_minus)
if last_initiator_plus != self.initiator_plus:
self.onInitiatorPlus.send(self, active=self.initiator_plus)
if last_initiator_error != self.initiator_error:
self.onInitiatorError.send(self, error=self.initiator_error)
if last_temperature_warning != self.temperature_warning:
self.onTemperatureWarning.send(self,
warning=self.temperature_warning)
def wait_for_stop(self):
self.update()
while self.running:
self.update()
def initiate(self):
raise NotImplementedError()
def goto_absolute(self, target, speed=None):
if self.limits and (target < min(self.limits)
or target > max(self.limits)):
raise ValueError()
self.do_goto_absolute(target, speed)
def do_goto_absolute(self, target, speed):
raise NotImplementedError()
def goto_relative(self, offset, speed=None):
raise NotImplementedError()
class AccountToUpdate(object):
on_ready = Signal()
on_complete = Signal()
on_error = Signal()
on_failure = Signal()
def __init__(self, current_app, account_number, role_name, arns_list):
self.current_app = current_app
self.account_number = account_number
self.role_name = role_name
self.arn_list = arns_list
self.conn_details = {
'account_number': account_number,
'assume_role': role_name,
'session_name': 'aardvark',
'region': self.current_app.config.get('REGION') or 'us-east-1',
'arn_partition': self.current_app.config.get('ARN_PARTITION') or 'aws'
}
self.max_access_advisor_job_wait = 5 * 60 # Wait 5 minutes before giving up on jobs
def update_account(self):
"""
Updates Access Advisor data for a given AWS account.
1) Gets list of IAM Role ARNs in target account.
2) Gets IAM credentials in target account.
3) Calls GenerateServiceLastAccessedDetails for each role
4) Calls GetServiceLastAccessedDetails for each role to retrieve data
:return: Return code and JSON Access Advisor data for given account
"""
self.on_ready.send(self)
arns = self._get_arns()
if not arns:
self.current_app.logger.warn("Zero ARNs collected. Exiting")
sys.exit(-1)
client = self._get_client()
try:
details = self._call_access_advisor(client, list(arns))
except Exception as e:
self.on_failure.send(self, error=e)
self.current_app.logger.exception('Failed to call access advisor', exc_info=True)
return 255, None
else:
self.on_complete.send(self)
return 0, details
def _get_arns(self):
"""
Gets a list of all Role ARNs in a given account, optionally limited by
class property ARN filter
:return: list of role ARNs
"""
client = boto3_cached_conn(
'iam', service_type='client', **self.conn_details)
account_arns = set()
for role in list_roles(**self.conn_details):
account_arns.add(role['Arn'])
for user in list_users(**self.conn_details):
account_arns.add(user['Arn'])
for page in client.get_paginator('list_policies').paginate(Scope='Local'):
for policy in page['Policies']:
account_arns.add(policy['Arn'])
for page in client.get_paginator('list_groups').paginate():
for group in page['Groups']:
account_arns.add(group['Arn'])
result_arns = set()
for arn in self.arn_list:
if arn.lower() == 'all':
return account_arns
if arn not in account_arns:
self.current_app.logger.warn("Provided ARN {arn} not found in account.".format(arn=arn))
continue
result_arns.add(arn)
return list(result_arns)
def _get_client(self):
"""
Assumes into the target account and obtains IAM client
:return: boto3 IAM client in target account & role
"""
client = boto3_cached_conn(
'iam', **self.conn_details)
return client
def _call_access_advisor(self, iam, arns):
jobs = self._generate_job_ids(iam, arns)
details = self._get_job_results(iam, jobs)
if arns and not details:
self.current_app.error("Didn't get any results from Access Advisor")
return details
@rate_limited()
def _generate_service_last_accessed_details(self, iam, arn):
""" Wrapping the actual AWS API calls for rate limiting protection. """
return iam.generate_service_last_accessed_details(Arn=arn)['JobId']
@rate_limited()
def _get_service_last_accessed_details(self, iam, job_id):
""" Wrapping the actual AWS API calls for rate limiting protection. """
return iam.get_service_last_accessed_details(JobId=job_id)
def _generate_job_ids(self, iam, arns):
jobs = {}
for role_arn in arns:
try:
job_id = self._generate_service_last_accessed_details(iam, role_arn)
jobs[job_id] = role_arn
except iam.exceptions.NoSuchEntityException:
""" We're here because this ARN disappeared since the call to self._get_arns(). Log the missing ARN and move along. """
self.current_app.logger.info('ARN {arn} found gone when fetching details'.format(arn=role_arn))
except Exception as e:
self.on_error.send(self, error=e)
self.current_app.logger.error('Could not gather data from {0}.'.format(role_arn), exc_info=True)
return jobs
def _get_job_results(self, iam, jobs):
access_details = {}
job_queue = list(jobs.keys())
last_job_completion_time = time.time()
while job_queue:
# Check for timeout
now = time.time()
if now - last_job_completion_time > self.max_access_advisor_job_wait:
# We ran out of time, some jobs are unfinished
self._log_unfinished_jobs(job_queue, jobs)
break
# Pull next job ID
job_id = job_queue.pop()
role_arn = jobs[job_id]
try:
details = self._get_service_last_accessed_details(iam, job_id)
except Exception as e:
self.on_error.send(self, error=e)
self.current_app.logger.error('Could not gather data from {0}.'.format(role_arn), exc_info=True)
continue
# Check job status
if details['JobStatus'] == 'IN_PROGRESS':
job_queue.append(job_id)
continue
# Check for job failure
if details['JobStatus'] != 'COMPLETED':
log_str = "Job {job_id} finished with unexpected status {status} for ARN {arn}.".format(
job_id=job_id,
status=details['JobStatus'],
arn=role_arn)
failing_arns = self.current_app.config.get('FAILING_ARNS', {})
if role_arn in failing_arns:
self.current_app.logger.info(log_str)
else:
self.current_app.logger.error(log_str)
continue
# Job status must be COMPLETED. Save result.
last_job_completion_time = time.time()
updated_list = []
for detail in details.get('ServicesLastAccessed'):
# create a copy, we're going to modify the time to epoch
updated_item = copy.copy(detail)
# AWS gives a datetime, convert to epoch
last_auth = detail.get('LastAuthenticated')
if last_auth:
last_auth = int(time.mktime(last_auth.timetuple()) * 1000)
else:
last_auth = 0
updated_item['LastAuthenticated'] = last_auth
updated_list.append(updated_item)
access_details[role_arn] = updated_list
return access_details
def _log_unfinished_jobs(self, job_queue, job_details):
for job_id in job_queue:
role_arn = job_details[job_id]
self.current_app.logger.error("Job {job_id} for ARN {arn} didn't finish".format(
job_id=job_id,
arn=role_arn,
))
def __init__(self, limits=None, scale={}):
from blinker import Signal
self.limits = limits
self.scale = scale
self.position = None
self.running = None
self.initializing = None
self.initialized = None
self.initiator_minus = None
self.initiator_plus = None
self.initiator_error = None
self.temperature_warning = None
self.onPosition = Signal()
self.onRunning = Signal()
self.onInitializing = Signal()
self.onInitialized = Signal()
self.onInitiatorMinus = Signal()
self.onInitiatorPlus = Signal()
self.onInitiatorError = Signal()
self.onTemperatureWarning = Signal()
class GraphBase(ISerializable):
def __init__(self,
name,
manager,
parentGraph=None,
category='',
uid=None,
*args,
**kwargs):
super(GraphBase, self).__init__(*args, **kwargs)
self.graphManager = manager
self._isRoot = False
# signals
self.nameChanged = Signal(str)
self.categoryChanged = Signal(str)
self.__name = name
self.__category = category
self._parentGraph = None
self.childGraphs = set()
self.parentGraph = parentGraph
self.nodes = {}
self.vars = {}
self.uid = uuid.uuid4() if uid is None else uid
manager.add(self)
def setIsRoot(self, bIsRoot):
self._isRoot = bIsRoot
def isRoot(self):
return self._isRoot
@property
def parentGraph(self):
return self._parentGraph
@parentGraph.setter
def parentGraph(self, newParentGraph):
if self.isRoot():
self._parentGraph = None
return
if newParentGraph is not None:
if self._parentGraph is not None:
# remove self from old parent's children set
if self in self._parentGraph.childGraphs:
self._parentGraph.childGraphs.remove(self)
# add self to new parent's children set
newParentGraph.childGraphs.add(self)
# update parent
self._parentGraph = newParentGraph
def depth(self):
result = 1
parent = self._parentGraph
while parent is not None:
result += 1
parent = parent.parentGraph
return result
def getVarList(self):
"""return list of variables from active graph
"""
result = list(self.vars.values())
parent = self._parentGraph
while parent is not None:
result += list(parent.vars.values())
parent = parent.parentGraph
return result
def serialize(self, *args, **Kwargs):
result = {
'name':
self.name,
'category':
self.category,
'vars': [v.serialize() for v in self.vars.values()],
'nodes': [n.serialize() for n in self.nodes.values()],
'depth':
self.depth(),
'isRoot':
self.isRoot(),
'parentGraphName':
str(self._parentGraph.name)
if self._parentGraph is not None else str(None)
}
return result
def populateFromJson(self, jsonData):
self.clear()
parentGraphName = jsonData['parentGraphName']
parentGraph = self.graphManager.findGraph(parentGraphName)
self.parentGraph = parentGraph
self.name = jsonData['name']
self.category = jsonData['category']
self.setIsRoot(jsonData['isRoot'])
# restore vars
for varJson in jsonData['vars']:
var = Variable.deserialize(self, varJson)
self.vars[var.uid] = var
# restore nodes
for nodeJson in jsonData['nodes']:
# check if variable getter or setter and pass variable
nodeArgs = ()
nodeKwargs = {}
if nodeJson['type'] in ('getVar', 'setVar'):
nodeKwargs['var'] = self.vars[uuid.UUID(nodeJson['varUid'])]
nodeJson['owningGraphName'] = self.name
node = getRawNodeInstance(nodeJson['type'],
packageName=nodeJson['package'],
libName=nodeJson['lib'],
*nodeArgs,
**nodeKwargs)
self.addNode(node, nodeJson)
# restore connections
for nodeJson in jsonData['nodes']:
for nodeOutputJson in nodeJson['outputs']:
lhsPin = self.findPin(str(nodeOutputJson['fullName']))
for rhsPinFullName in nodeOutputJson['linkedTo']:
rhsPin = self.findPin(rhsPinFullName)
connected = connectPins(lhsPin, rhsPin)
assert (connected is True), "Failed to restore connection"
def remove(self):
"""Removes this graph as well as child graphs. Deepest graphs will be removed first
"""
# graphs should be removed from leafs to root
for childGraph in set(self.childGraphs):
childGraph.remove()
# remove itself
self.graphManager.removeGraph(self)
def clear(self):
"""Clears content of this graph as well as child graphs. Deepest graphs will be cleared first
"""
# graphs should be cleared from leafs to root
for childGraph in self.childGraphs:
childGraph.clear()
# clear itself
for node in list(self.nodes.values()):
node.kill()
self.nodes.clear()
for var in list(self.vars.values()):
self.killVariable(var)
self.vars.clear()
@property
def name(self):
return self.__name
@name.setter
def name(self, value):
value = str(value)
if self.__name != value:
self.__name = value
self.nameChanged.send(self.__name)
@property
def category(self):
return self.__category
@category.setter
def category(self, value):
self.__category = str(value)
self.categoryChanged.send(self.__category)
def Tick(self, deltaTime):
for node in self.nodes.values():
node.Tick(deltaTime)
@property
def pins(self):
result = {}
for n in self.getNodes():
for pin in tuple(n.inputs.values()) + tuple(n.outputs.values()):
result[pin.uid] = pin
return result
def createVariable(self,
dataType=str('AnyPin'),
accessLevel=AccessLevel.public,
uid=None,
name=str("var")):
name = self.graphManager.getUniqVariableName(name)
var = Variable(self,
getPinDefaultValueByType(dataType),
name,
dataType,
accessLevel=accessLevel,
uid=uid)
self.vars[var.uid] = var
return var
def killVariable(self, var):
assert (isinstance(var, Variable))
if var.uid in self.vars:
popped = self.vars.pop(var.uid)
popped.killed.send()
def getEvaluationOrder(self, node):
order = {0: []}
# include first node only if it is callable
if not node.bCallable:
order[0].append(node)
def foo(n, process=True):
if not process:
return
next_layer_nodes = self.getNextLayerNodes(n, PinDirection.Input)
layer_idx = max(order.keys()) + 1
for n in next_layer_nodes:
if layer_idx not in order:
order[layer_idx] = []
order[layer_idx].append(n)
for i in next_layer_nodes:
foo(i)
foo(node)
# make sure no copies of nodes in higher layers (non directional cycles)
for i in reversed(sorted([i for i in order.keys()])):
for iD in range(i - 1, -1, -1):
for check_node in order[i]:
if check_node in order[iD]:
order[iD].remove(check_node)
return order
@staticmethod
def getNextLayerNodes(node, direction=PinDirection.Input):
nodes = []
'''
callable nodes skipped
because execution flow is defined by execution wires
'''
if direction == PinDirection.Input:
nodeInputs = node.inputs
if not len(nodeInputs) == 0:
for i in nodeInputs.values():
if not len(i.affected_by) == 0:
for a in i.affected_by:
if not a.owningNode().bCallable:
nodes.append(a.owningNode())
return nodes
if direction == PinDirection.Output:
nodeOutputs = node.outputs
if not len(nodeOutputs) == 0:
for i in nodeOutputs.values():
if not len(i.affects) == 0:
for p in i.affects:
if not p.owningNode().bCallable:
nodes.append(p.owningNode())
return nodes
def getNodes(self, classNameFilters=[]):
"""return all nodes without compound's nodes
"""
if len(classNameFilters) > 0:
return [
n for n in self.nodes.values()
if n.__class__.__name__ in classNameFilters
]
else:
return [n for n in self.nodes.values()]
@dispatch(str)
def findNode(self, name):
for i in self.nodes.values():
if i.name == name:
return i
return None
@dispatch(uuid.UUID)
def findNode(self, uuid):
return None
def getNodesByClassName(self, className):
nodes = []
for i in self.getNodes():
if i.__class__.__name__ == className:
nodes.append(i)
return nodes
@dispatch(uuid.UUID)
def findPin(self, uid):
pin = None
if uid in self.pins:
pin = self.pins[uid]
return pin
@dispatch(str)
def findPin(self, pinName):
result = None
for pin in self.pins.values():
if pinName == pin.getName():
result = pin
break
return result
def getInputNode(self):
"""Creates and adds to graph 'graphInputs' node
pins on this node will be exposed on compound node as input pins
"""
node = getRawNodeInstance("graphInputs", "PyflowBase")
self.addNode(node)
return node
def getOutputNode(self):
"""Creates and adds to graph 'graphOutputs' node.
pins on this node will be exposed on compound node as output pins
"""
node = getRawNodeInstance("graphOutputs", "PyflowBase")
self.addNode(node)
return node
def addNode(self, node, jsonTemplate=None):
assert (node is not None), "failed to add node, None is passed"
if node.uid in self.nodes:
return False
# Check if this node is variable get/set. Variables created in child graphs are not visible to parent ones
# Do not disrupt variable scope
if node.__class__.__name__ in ['getVar', 'setVar']:
var = self.graphManager.findVariable(node.variableUid())
variableLocation = var.location()
if len(variableLocation) > len(self.location()):
return False
if jsonTemplate is not None:
jsonTemplate['name'] = self.graphManager.getUniqName(
jsonTemplate['name'])
else:
node.setName(self.graphManager.getUniqName(node.name))
self.nodes[node.uid] = node
node.graph = weakref.ref(self)
node.postCreate(jsonTemplate)
return True
def location(self):
result = [self.name]
parent = self._parentGraph
while parent is not None:
result.insert(0, parent.name)
parent = parent.parentGraph
return result
def count(self):
return self.nodes.__len__()
def plot(self):
depth = self.depth()
prefix = "".join(['-'] * depth) if depth > 1 else ''
parentGraphString = str(
None) if self.parentGraph is None else self.parentGraph.name
print(prefix + "GRAPH:" + self.name +
", parent:{0}".format(parentGraphString))
# for n in self.getNodes():
# print(prefix + "-Node:{}".format(n.name))
assert (self not in self.childGraphs)
for child in self.childGraphs:
child.plot()
def init(self):
self = super(MailboxesAccountItem, self).init()
self.folder_items = []
self.updated = Signal()
return self
from blinker import Signal on_init = Signal() on_session = Signal() on_parse = Signal() on_meta = Signal() on_wait = Signal()