def test_delete_search():
# Arrange: create a codelist with searches
owner = UserFactory()
cl = actions.create_codelist(
owner=owner, name="Test Codelist", coding_system_id="snomedct"
)
s1 = actions.create_search(
codelist=cl, term="synchronised", codes=["1068181000000106"]
)
s2 = actions.create_search(
codelist=cl, term="swimming", codes=["1067731000000107", "1068181000000106"]
)
# Act: delete the search for "swimming"
actions.delete_search(search=s2)
# Assert...
# that the codelist has only 1 search
assert cl.searches.count() == 1
# that the codelist has only 1 code
assert cl.codes.count() == 1
# Arrange: recreate the search for "swimming"
actions.create_search(
codelist=cl, term="swimming", codes=["1067731000000107", "1068181000000106"]
)
# Act: delete the search for "synchronised"
actions.delete_search(search=s1)
# Assert...
# that the codelist has only 1 search
assert cl.searches.count() == 1
# that the codelist still has both codes
assert cl.codes.count() == 2
def test_codelist(client, tennis_elbow_codelist):
owner = UserFactory()
cl = actions.create_codelist(
owner=owner, name="Elbows", coding_system_id="snomedct"
)
search_results = do_search(cl.coding_system, "elbow")
actions.create_search(codelist=cl, term="elbow", codes=search_results["all_codes"])
client.force_login(owner)
rsp = client.get(f"/builder/{owner.username}/{cl.slug}/")
assert rsp.status_code == 200
assert b"Elbows" in rsp.content
def test_create_codelist():
# Arrange: create a user
owner = UserFactory()
# Act: create a codelist
cl = actions.create_codelist(
owner=owner, name="Test Codelist", coding_system_id="snomedct"
)
# Assert...
# that a codelist's attributes have been set
assert cl.owner == owner
assert cl.name == "Test Codelist"
assert cl.slug == "test-codelist"
assert cl.coding_system_id == "snomedct"
def handle(self, path, **kwargs):
if Concept.objects.count() > 0:
raise CommandError("Must be run against empty database")
fixtures_path = Path(settings.BASE_DIR, "coding_systems", "snomedct",
"fixtures")
call_command("loaddata", fixtures_path / "core-model-components.json")
call_command("loaddata", fixtures_path / "tennis-elbow.json")
owner = UserFactory()
cl = actions.create_codelist(owner=owner,
name="Elbows",
coding_system_id="snomedct")
search_results = do_search(cl.coding_system, "elbow")
actions.create_search(codelist=cl,
term="elbow",
codes=search_results["all_codes"])
client = Client()
client.force_login(owner)
rsp = client.get(f"/builder/{owner.username}/{cl.slug}/")
data = {
k: rsp.context[k]
for k in [
"searches",
"filter",
"tables",
"included_codes",
"excluded_codes",
"displayed_codes",
"parent_map",
"child_map",
"is_editable",
"update_url",
"search_url",
]
}
with open(path, "w") as f:
json.dump(data, f, indent=2)
def test_create_search():
# Arrange: create a codelist
owner = UserFactory()
cl = actions.create_codelist(
owner=owner, name="Test Codelist", coding_system_id="snomedct"
)
# Act: create a first search
s = actions.create_search(
codelist=cl, term="swimming", codes=["1067731000000107", "1068181000000106"]
)
# Assert...
# that the search's attributes have been set
assert s.codelist == cl
assert s.term == "swimming"
assert s.slug == "swimming"
# that the newly created search has 2 results
assert s.results.count() == 2
# that the codelist has 1 search
assert cl.searches.count() == 1
# that the codelist has 2 codes
assert cl.codes.count() == 2
# Act: create another search
s = actions.create_search(
codelist=cl, term="synchronised", codes=["1068181000000106"]
)
# Assert...
# that the newly created search has 1 result
assert s.results.count() == 1
# that the codelist has 2 searches
assert cl.searches.count() == 2
# that the codelist still has 2 codes
assert cl.codes.count() == 2
def test_update_code_statuses(tennis_elbow):
# Arrange: load fixtures and create a codelist with a search
owner = UserFactory()
cl = actions.create_codelist(
owner=owner, name="Test Codelist", coding_system_id="snomedct"
)
# Search results have this structure in hierarchy
#
# 116309007 Finding of elbow region
# 128133004 Disorder of elbow
# 239964003 Soft tissue lesion of elbow region
# 35185008 Enthesopathy of elbow region
# 73583000 Epicondylitis
# 202855006 Lateral epicondylitis
# 429554009 Arthropathy of elbow
# 439656005 Arthritis of elbow
# 202855006 Lateral epicondylitis
# 298869002 Finding of elbow joint
# 298163003 Elbow joint inflamed
# 439656005 Arthritis of elbow
# 202855006 Lateral epicondylitis
# 429554009 Arthropathy of elbow
# 439656005 Arthritis of elbow
# 202855006 Lateral epicondylitis
actions.create_search(
codelist=cl,
term="elbow",
codes=[
"116309007", # Finding of elbow region
"128133004", # Disorder of elbow
"239964003", # Soft tissue lesion of elbow region
"35185008", # Enthesopathy of elbow region
"73583000", # Epicondylitis
"202855006", # Lateral epicondylitis
"429554009", # Arthropathy of elbow
"439656005", # Arthritis of elbow
"298869002", # Finding of elbow joint
"298163003", # Elbow joint inflamed
],
)
# Act: process single update from the client
actions.update_code_statuses(codelist=cl, updates=[("35185008", "+")])
# Assert that results have the expected status
assert dict(cl.codes.values_list("code", "status")) == {
"116309007": "?", # Finding of elbow region
"128133004": "?", # Disorder of elbow
"239964003": "?", # Soft tissue lesion of elbow region
"35185008": "+", # Enthesopathy of elbow region
"73583000": "(+)", # Epicondylitis
"202855006": "(+)", # Lateral epicondylitis
"429554009": "?", # Arthropathy of elbow
"439656005": "?", # Arthritis of elbow
"298869002": "?", # Finding of elbow joint
"298163003": "?", # Elbow joint inflamed
}
# Act: process multiple updates from the client
actions.update_code_statuses(
codelist=cl, updates=[("35185008", "-"), ("116309007", "+"), ("35185008", "?")]
)
# Assert that results have the expected status
assert dict(cl.codes.values_list("code", "status")) == {
"116309007": "+", # Finding of elbow region
"128133004": "(+)", # Disorder of elbow
"239964003": "(+)", # Soft tissue lesion of elbow region
"35185008": "(+)", # Enthesopathy of elbow region
"73583000": "(+)", # Epicondylitis
"202855006": "(+)", # Lateral epicondylitis
"429554009": "(+)", # Arthropathy of elbow
"439656005": "(+)", # Arthritis of elbow
"298869002": "(+)", # Finding of elbow joint
"298163003": "(+)", # Elbow joint inflamed
}