def __init__(self, *args, **kw):
super(ImportDialog, self).__init__(*args, **kw)
loadUI(splitext(__file__)[0] + '.ui', self)
for name, scn in FileScanner.iterclasses():
self.structType.addItem(scn.icon(), name)
self.structType.setIconSize(QtCore.QSize(48, 24))
self.metadata = None
self._files = None
self.progressBar.hide()
self.segdlg = SegmentationDialog(self)
self.segdlg.hide()
self.thread = AtThread(self)
self.viewer.setSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding,
QtWidgets.QSizePolicy.MinimumExpanding)
self.cbar = ChannelBar(self, self.viewer)
self.cbox.addWidget(self.cbar)
self.cbar.newPixmap.connect(self.viewer.showPixmap,
Qt.DirectConnection)
self.cbar.newContourImage.connect(self.viewer.contourImage)
self.dataFileBtn.clicked.connect(self.onOpenOutFile)
self.imageDirBtn.clicked.connect(self.onOpenImageDir)
self.startBtn.clicked.connect(self.raw2hdf)
self.closeBtn.clicked.connect(self.close)
self.closeBtn.clicked.connect(self.cbar.clear)
self.segmentationBtn.clicked.connect(self.onSegmentationBtn)
self.slider.newValue.connect(self.showObjects)
self.slider.valueChanged.connect(self.showImage)
self.slider.sliderReleased.connect(self.showObjects)
self.slider.sliderPressed.connect(self.cbar.clearContours)
self.contoursCb.stateChanged.connect(self.onContours)
self.showBBoxes.stateChanged.connect(self.onBBoxes)
self.showBBoxes.stateChanged.connect(self.showObjects)
self.segdlg.paramsChanged.connect(self.showObjects)
self.segdlg.refreshBtn.clicked.connect(self.showObjects)
self.segdlg.imageUpdate.connect(self.showImage)
self.segdlg.activateChannels.connect(self.cbar.activateChannels)
self.segdlg.changeColor.connect(self.cbar.setColor)
self.nextBtn.clicked.connect(self.onNextBtn)
self.prevBtn.clicked.connect(self.onPrevBtn)
def __init__(self, file_=None, *args, **kw):
super(AtMainWindow, self).__init__(*args, **kw)
loadUI(splitext(__file__)[0]+'.ui', self)
self.setWindowTitle(version.appstr)
self.setAcceptDrops(True)
self.featuredlg = AtFeatureSelectionDlg(self)
self.featuredlg.hide()
self.loaderThread = AtThread(self)
self.loader = AtLoader()
self._lastdir = expanduser("~")
try:
self.assistant = AtAssistant(MANUAL)
self.assistant.hide()
except IOError:
QMessageBox.information(self, "Information",
"Sorry help files are not installed")
self.setupToolbar()
self.tileview = AtGraphicsView(
parent=self,
gsize=self.navToolBar.galsize)
self.toolBar.valueChanged.connect(self.tileview.zoom)
self.toolBar.classification.stateChanged.connect(
self.tileview.toggleClassIndicators, Qt.QueuedConnection)
self.toolBar.masking.stateChanged.connect(
self.tileview.toggleMasks, Qt.QueuedConnection)
self.toolBar.outline.stateChanged.connect(
self.tileview.toggleOutlines, Qt.QueuedConnection)
self.toolBar.description.stateChanged.connect(
self.tileview.toggleDescription, Qt.QueuedConnection)
self.setCentralWidget(self.tileview)
self.setupDock()
self.setupProgressBar()
self.loader.fileOpened.connect(self.updateToolbars)
self.loader.progressUpdate.connect(self.updateProgressBar)
self.loader.itemLoaded.connect(self.tileview.addItem)
self.abort.connect(self.loader.abort)
self.actionNewFile.triggered.connect(self.newDataFile)
self.actionOpenHdf.triggered.connect(self.onFileOpen)
self.actionCloseHdf.triggered.connect(self.onFileClose)
self.actionPreferences.triggered.connect(self.onPreferences)
self.actionExportViewPanel.triggered.connect(self.saveImage)
self.actionSaveData2Csv.triggered.connect(self.saveData2Csv)
self.actionSaveCountingStats.triggered.connect(self.saveCountingStats)
self.actionAboutQt.triggered.connect(self.onAboutQt)
self.actionAboutAnnotationTool.triggered.connect(self.onAbout)
self.actionFeatureSelection.triggered.connect(
self.showFeatureDlg)
self.actionHelpManual.triggered.connect(self.onHelpManual)
self.actionShortcuts.triggered.connect(self.onHelpShortcuts)
self.actionRefresh.triggered.connect(self.refresh)
self.actionSelectAll.triggered.connect(
self.tileview.actionSelectAll.trigger)
self.actionInvertSelection.triggered.connect(
self.tileview.actionInvertSelection.trigger)
self.tileview.zoomChanged.connect(self.updateZoomFactor)
self.featuredlg.selectionChanged.connect(
self.annotation.predictionInvalid)
self.loader.started.connect(self.onLoadingStarted)
self.zoom = QtWidgets.QLabel('100%')
self.statusbar.insertPermanentWidget(0, self.zoom)
self.statusbar.insertPermanentWidget(1,
QtWidgets.QLabel('Number of items:'))
self.nitems = QtWidgets.QLabel('0')
self.statusbar.insertPermanentWidget(2, self.nitems)
self._restoreSettings()
self.navToolBar.hide()
self.show()
if file_ is not None:
self.loader.openFile(file_)
self.loadItems()
