def write_schema(pipeline_filename):
if pipeline_filename is None:
raise ValueError(
"The --write-schema-and-exit switch must be used in conjunction\nwith the -p or --pipeline switch to load a pipeline with an\n"
"ExportToDatabase module.")
pipeline = cellprofiler.pipeline.Pipeline()
pipeline.load(pipeline_filename)
pipeline.turn_off_batch_mode()
for module in pipeline.modules():
if module.module_name == "ExportToDatabase":
break
else:
raise ValueError(
"The pipeline, \"%s\", does not have an ExportToDatabase module" %
pipeline_filename)
m = cellprofiler.measurement.Measurements()
workspace = cellprofiler.workspace.Workspace(pipeline, module, m,
cellprofiler.object.ObjectSet,
m, None)
module.prepare_run(workspace)
def write_schema(pipeline_filename):
if pipeline_filename is None:
raise ValueError(
"The --write-schema-and-exit switch must be used in conjunction\nwith the -p or --pipeline switch to load a pipeline with an\n"
"ExportToDatabase module.")
pipeline = cellprofiler.pipeline.Pipeline()
pipeline.load(pipeline_filename)
pipeline.turn_off_batch_mode()
for module in pipeline.modules():
if module.module_name == "ExportToDatabase":
break
else:
raise ValueError("The pipeline, \"%s\", does not have an ExportToDatabase module" % pipeline_filename)
m = cellprofiler.measurement.Measurements()
workspace = cellprofiler.workspace.Workspace(pipeline, module, m, cellprofiler.object.ObjectSet, m, None)
module.prepare_run(workspace)
