def test_microbial_samples_to_status(microbial_order_to_submit):
# GIVEN microbial order with three samples
# WHEN parsing for status
data = StatusHandler.microbial_samples_to_status(microbial_order_to_submit)
# THEN it should pick out samples and relevant information
assert len(data["samples"]) == 5
assert data["customer"] == "cust002"
assert data["order"] == "Microbial samples"
assert data["comment"] == "Order comment"
# THEN first sample should contain all the relevant data from the microbial order
sample_data = data["samples"][0]
assert sample_data.get("priority") in "research"
assert sample_data["name"] == "all-fields"
assert sample_data.get("internal_id") is None
assert sample_data["organism_id"] == "M.upium"
assert sample_data["reference_genome"] == "NC_111"
assert sample_data["application"] == "MWRNXTR003"
assert sample_data["data_analysis"] == "fastq"
assert sample_data["comment"] == "plate comment"
def microbial_status_data(microbial_order_to_submit):
"""Parse microbial order example."""
data = StatusHandler.microbial_samples_to_status(microbial_order_to_submit)
return data