def test_create_sample_sheet_no_run_parameters(
cli_runner: testing.CliRunner,
flowcell_working_directory_no_run_parameters: Path,
sample_sheet_context: CGConfig,
caplog,
mocker,
):
# GIVEN a folder with a non existing sample sheet
flowcell_object: Flowcell = Flowcell(
flowcell_working_directory_no_run_parameters)
assert flowcell_object.run_parameters_path.exists() is False
mocker.patch("cg.cli.demultiplex.sample_sheet.flowcell_samples",
return_value=[{
"sample": 1
}])
demux_api: DemultiplexingAPI = sample_sheet_context.demultiplex_api
demux_api.run_dir = flowcell_working_directory_no_run_parameters.parent
sample_sheet_context.demultiplex_api_ = demux_api
# WHEN running the create sample sheet command
result: testing.Result = cli_runner.invoke(
create_sheet, [flowcell_object.flowcell_full_name],
obj=sample_sheet_context)
# THEN assert it exits with a non zero exit code
assert result.exit_code != 0
# THEN assert the correct information is communicated
assert "Could not find run parameters file" in caplog.text
def fixture_demultiplex_context(
demultiplexing_api: DemultiplexingAPI,
stats_api: StatsAPI,
real_housekeeper_api: HousekeeperAPI,
cg_context: CGConfig,
) -> CGConfig:
cg_context.demultiplex_api_ = demultiplexing_api
cg_context.cg_stats_api_ = stats_api
cg_context.housekeeper_api_ = real_housekeeper_api
return cg_context