def convertControlGTFToBed12(infile, outfile):
"""
Convert either ensembl lincRNA, or control gtf to bed12 format
"""
PipelineLncRNA.gtfToBed12(infile, outfile, "transcript")
def convertGTFToBed12(infile, outfile):
"""
Transform the lncrna_final.gtf.gz into lncrna_final.bed
"""
PipelineLncRNA.gtfToBed12(infile, outfile, "transcript")