def visit_NestedVectorFieldEvalNode(self, node):
self.visit(node.fields)
self.visit(node.args)
cstat = []
for fld in node.fields.obj:
ccode_eval = fld.ccode_eval(node.var, node.var2, node.var3, fld.U,
fld.V, fld.W, *node.args.ccode)
if fld.U.interp_method != 'cgrid_velocity':
ccode_conv1 = fld.U.ccode_convert(*node.args.ccode)
ccode_conv2 = fld.V.ccode_convert(*node.args.ccode)
statements = [
c.Statement("%s *= %s" % (node.var, ccode_conv1)),
c.Statement("%s *= %s" % (node.var2, ccode_conv2))
]
else:
statements = []
if fld.vector_type == '3D':
ccode_conv3 = fld.W.ccode_convert(*node.args.ccode)
statements.append(
c.Statement("%s *= %s" % (node.var3, ccode_conv3)))
cstat += [
c.Assign("err", ccode_eval),
c.Block(statements),
c.If(
"err != ERROR_OUT_OF_BOUNDS ",
c.Block([
c.Statement("CHECKSTATUS(err)"),
c.Statement("break")
]))
]
cstat += [c.Statement("CHECKSTATUS(err)"), c.Statement("break")]
node.ccode = c.While("1==1", c.Block(cstat))
def visit_While(self, o):
condition = ccode(o.condition)
if o.body:
body = flatten(self._visit(i) for i in o.children)
return c.While(condition, body)
else:
# Hack: cgen doesn't support body-less while-loops, i.e. `while(...);`
return c.Statement('while(%s)' % condition)
def generate(self, funcname, field_args, const_args, kernel_ast, c_include):
ccode = []
# Add include for Parcels and math header
ccode += [str(c.Include("parcels.h", system=False))]
ccode += [str(c.Include("math.h", system=False))]
# Generate type definition for particle type
vdecl = []
for v in self.ptype.variables:
if v.dtype == np.uint64:
vdecl.append(c.Pointer(c.POD(np.void, v.name)))
else:
vdecl.append(c.POD(v.dtype, v.name))
ccode += [str(c.Typedef(c.GenerableStruct("", vdecl, declname=self.ptype.name)))]
if c_include:
ccode += [c_include]
# Insert kernel code
ccode += [str(kernel_ast)]
# Generate outer loop for repeated kernel invocation
args = [c.Value("int", "num_particles"),
c.Pointer(c.Value(self.ptype.name, "particles")),
c.Value("double", "endtime"), c.Value("float", "dt")]
for field, _ in field_args.items():
args += [c.Pointer(c.Value("CField", "%s" % field))]
for const, _ in const_args.items():
args += [c.Value("float", const)]
fargs_str = ", ".join(['particles[p].time', 'sign_dt * __dt'] + list(field_args.keys())
+ list(const_args.keys()))
# Inner loop nest for forward runs
sign_dt = c.Assign("sign_dt", "dt > 0 ? 1 : -1")
sign_end_part = c.Assign("sign_end_part", "endtime - particles[p].time > 0 ? 1 : -1")
dt_pos = c.Assign("__dt", "fmin(fabs(particles[p].dt), fabs(endtime - particles[p].time))")
dt_0_break = c.If("particles[p].dt == 0", c.Statement("break"))
notstarted_continue = c.If("(sign_end_part != sign_dt) && (particles[p].dt != 0)",
c.Statement("continue"))
body = [c.Assign("res", "%s(&(particles[p]), %s)" % (funcname, fargs_str))]
body += [c.Assign("particles[p].state", "res")] # Store return code on particle
body += [c.If("res == SUCCESS", c.Block([c.Statement("particles[p].time += sign_dt * __dt"),
dt_pos, dt_0_break, c.Statement("continue")]))]
body += [c.If("res == REPEAT", c.Block([dt_pos, c.Statement("continue")]),
c.Statement("break"))]
time_loop = c.While("__dt > __tol || particles[p].dt == 0", c.Block(body))
part_loop = c.For("p = 0", "p < num_particles", "++p",
c.Block([sign_end_part, notstarted_continue, dt_pos, time_loop]))
fbody = c.Block([c.Value("int", "p, sign_dt, sign_end_part"), c.Value("ErrorCode", "res"),
c.Value("double", "__dt, __tol"), c.Assign("__tol", "1.e-6"),
sign_dt, part_loop])
fdecl = c.FunctionDeclaration(c.Value("void", "particle_loop"), args)
ccode += [str(c.FunctionBody(fdecl, fbody))]
return "\n\n".join(ccode)
def generate(self, funcname, field_args, kernel_ast, adaptive=False):
ccode = []
# Add include for Parcels and math header
ccode += [str(c.Include("parcels.h", system=False))]
ccode += [str(c.Include("math.h", system=False))]
# Generate type definition for particle type
vdecl = [c.POD(dtype, var) for var, dtype in self.ptype.var_types.items()]
ccode += [str(c.Typedef(c.GenerableStruct("", vdecl, declname=self.ptype.name)))]
# Insert kernel code
ccode += [str(kernel_ast)]
# Generate outer loop for repeated kernel invocation
args = [c.Value("int", "num_particles"),
c.Pointer(c.Value(self.ptype.name, "particles")),
c.Value("double", "endtime"), c.Value("float", "dt")]
for field, _ in field_args.items():
args += [c.Pointer(c.Value("CField", "%s" % field))]
fargs_str = ", ".join(['particles[p].time', 'particles[p].dt'] + list(field_args.keys()))
# Inner loop nest for forward runs
dt_fwd = c.Statement("__dt = fmin(particles[p].dt, endtime - particles[p].time)")
body_fwd = [c.Statement("res = %s(&(particles[p]), %s)" % (funcname, fargs_str)),
c.If("res == SUCCESS", c.Statement("particles[p].time += __dt")), dt_fwd]
time_fwd = c.While("__dt > __tol", c.Block(body_fwd))
part_fwd = c.For("p = 0", "p < num_particles", "++p", c.Block([dt_fwd, time_fwd]))
# Inner loop nest for backward runs
dt_bwd = c.Statement("__dt = fmax(particles[p].dt, endtime - particles[p].time)")
body_bwd = [c.Statement("res = %s(&(particles[p]), %s)" % (funcname, fargs_str)),
c.If("res == SUCCESS", c.Statement("particles[p].time += __dt")), dt_bwd]
time_bwd = c.While("__dt < -1. * __tol", c.Block(body_bwd))
part_bwd = c.For("p = 0", "p < num_particles", "++p", c.Block([dt_bwd, time_bwd]))
time_if = c.If("dt > 0.0", c.Block([part_fwd]), c.Block([part_bwd]))
fbody = c.Block([c.Value("int", "p"), c.Value("KernelOp", "res"),
c.Value("double", "__dt, __tol"), c.Assign("__tol", "1.e-6"),
time_if])
fdecl = c.FunctionDeclaration(c.Value("void", "particle_loop"), args)
ccode += [str(c.FunctionBody(fdecl, fbody))]
return "\n\n".join(ccode)
def visit_NestedFieldEvalNode(self, node):
self.visit(node.fields)
self.visit(node.args)
cstat = []
for fld in node.fields.obj:
ccode_eval = fld.ccode_eval(node.var, *node.args.ccode)
ccode_conv = fld.ccode_convert(*node.args.ccode)
conv_stat = c.Statement("%s *= %s" % (node.var, ccode_conv))
cstat += [c.Assign("err", ccode_eval),
conv_stat,
c.If("err != ERROR_OUT_OF_BOUNDS ", c.Block([c.Statement("CHECKERROR(err)"), c.Statement("break")]))]
cstat += [c.Statement("CHECKERROR(err)"), c.Statement("break")]
node.ccode = c.While("1==1", c.Block(cstat))
def generate(self, funcname, field_args, const_args, kernel_ast,
c_include):
ccode = []
pname = self.ptype.name + 'p'
# ==== Add include for Parcels and math header ==== #
ccode += [str(c.Include("parcels.h", system=False))]
#ccode += [str(c.Include("math.h", system=False))] # removed by Lyc because it is already in parcels.h ???
#ccode += [str(c.Include("stdbool.h", system=False))] # added by Luc to accomodate crossdike.h booleans
ccode += [str(c.Assign('double _next_dt', '0'))]
ccode += [str(c.Assign('size_t _next_dt_set', '0'))]
ccode += [
str(
c.Assign(
'const int ngrid',
str(self.fieldset.gridset.size if self.
fieldset is not None else 1)))
]
# ==== Generate type definition for particle type ==== #
vdeclp = [
c.Pointer(c.POD(v.dtype, v.name)) for v in self.ptype.variables
]
ccode += [
str(c.Typedef(c.GenerableStruct("", vdeclp, declname=pname)))
]
# Generate type definition for single particle type
vdecl = [
c.POD(v.dtype, v.name) for v in self.ptype.variables
if v.dtype != np.uint64
]
ccode += [
str(
c.Typedef(
c.GenerableStruct("", vdecl, declname=self.ptype.name)))
]
args = [
c.Pointer(c.Value(self.ptype.name, "particle_backup")),
c.Pointer(c.Value(pname, "particles")),
c.Value("int", "pnum")
]
p_back_set_decl = c.FunctionDeclaration(
c.Static(
c.DeclSpecifier(c.Value("void", "set_particle_backup"),
spec='inline')), args)
body = []
for v in self.ptype.variables:
if v.dtype != np.uint64 and v.name not in ['dt', 'state']:
body += [
c.Assign(("particle_backup->%s" % v.name),
("particles->%s[pnum]" % v.name))
]
p_back_set_body = c.Block(body)
p_back_set = str(c.FunctionBody(p_back_set_decl, p_back_set_body))
ccode += [p_back_set]
args = [
c.Pointer(c.Value(self.ptype.name, "particle_backup")),
c.Pointer(c.Value(pname, "particles")),
c.Value("int", "pnum")
]
p_back_get_decl = c.FunctionDeclaration(
c.Static(
c.DeclSpecifier(c.Value("void", "get_particle_backup"),
spec='inline')), args)
body = []
for v in self.ptype.variables:
if v.dtype != np.uint64 and v.name not in ['dt', 'state']:
body += [
c.Assign(("particles->%s[pnum]" % v.name),
("particle_backup->%s" % v.name))
]
p_back_get_body = c.Block(body)
p_back_get = str(c.FunctionBody(p_back_get_decl, p_back_get_body))
ccode += [p_back_get]
update_next_dt_decl = c.FunctionDeclaration(
c.Static(
c.DeclSpecifier(c.Value("void", "update_next_dt"),
spec='inline')), [c.Value('double', 'dt')])
if 'update_next_dt' in str(kernel_ast):
body = []
body += [c.Assign("_next_dt", "dt")]
body += [c.Assign("_next_dt_set", "1")]
update_next_dt_body = c.Block(body)
update_next_dt = str(
c.FunctionBody(update_next_dt_decl, update_next_dt_body))
ccode += [update_next_dt]
if c_include:
ccode += [c_include]
# ==== Insert kernel code ==== #
ccode += [str(kernel_ast)]
# Generate outer loop for repeated kernel invocation
args = [
c.Value("int", "num_particles"),
c.Pointer(c.Value(pname, "particles")),
c.Value("double", "endtime"),
c.Value("double", "dt")
]
for field, _ in field_args.items():
args += [c.Pointer(c.Value("CField", "%s" % field))]
for const, _ in const_args.items():
args += [c.Value("double", const)]
fargs_str = ", ".join(['particles->time[pnum]'] +
list(field_args.keys()) +
list(const_args.keys()))
# ==== statement clusters use to compose 'body' variable and variables 'time_loop' and 'part_loop' ==== ##
sign_dt = c.Assign("sign_dt", "dt > 0 ? 1 : -1")
particle_backup = c.Statement("%s particle_backup" % self.ptype.name)
sign_end_part = c.Assign(
"sign_end_part", "(endtime - particles->time[pnum]) > 0 ? 1 : -1")
reset_res_state = c.Assign("res", "particles->state[pnum]")
update_state = c.Assign("particles->state[pnum]", "res")
update_pdt = c.If(
"_next_dt_set == 1",
c.Block([
c.Assign("_next_dt_set", "0"),
c.Assign("particles->dt[pnum]", "_next_dt")
]))
dt_pos = c.Assign(
"__dt",
"fmin(fabs(particles->dt[pnum]), fabs(endtime - particles->time[pnum]))"
) # original
pdt_eq_dt_pos = c.Assign("__pdt_prekernels", "__dt * sign_dt")
partdt = c.Assign("particles->dt[pnum]", "__pdt_prekernels")
check_pdt = c.If(
"(res == SUCCESS) & !is_equal_dbl(__pdt_prekernels, particles->dt[pnum])",
c.Assign("res", "REPEAT"))
dt_0_break = c.If("is_zero_dbl(particles->dt[pnum])",
c.Statement("break"))
notstarted_continue = c.If(
"(( sign_end_part != sign_dt) || is_close_dbl(__dt, 0) ) && !is_zero_dbl(particles->dt[pnum])",
c.Block([
c.If("fabs(particles->time[pnum]) >= fabs(endtime)",
c.Assign("particles->state[pnum]", "SUCCESS")),
c.Statement("continue")
]))
# ==== main computation body ==== #
body = [
c.Statement(
"set_particle_backup(&particle_backup, particles, pnum)")
]
body += [pdt_eq_dt_pos]
body += [partdt]
body += [
c.Value("StatusCode", "state_prev"),
c.Assign("state_prev", "particles->state[pnum]")
]
body += [
c.Assign("res", "%s(particles, pnum, %s)" % (funcname, fargs_str))
]
body += [
c.If("(res==SUCCESS) && (particles->state[pnum] != state_prev)",
c.Assign("res", "particles->state[pnum]"))
]
body += [check_pdt]
body += [
c.If(
"res == SUCCESS || res == DELETE",
c.Block([
c.Statement(
"particles->time[pnum] += particles->dt[pnum]"),
update_pdt, dt_pos, sign_end_part,
c.If(
"(res != DELETE) && !is_close_dbl(__dt, 0) && (sign_dt == sign_end_part)",
c.Assign("res", "EVALUATE")),
c.If("sign_dt != sign_end_part",
c.Assign("__dt", "0")), update_state, dt_0_break
]),
c.Block([
c.Statement(
"get_particle_backup(&particle_backup, particles, pnum)"
), dt_pos, sign_end_part,
c.If("sign_dt != sign_end_part", c.Assign("__dt", "0")),
update_state,
c.Statement("break")
]))
]
time_loop = c.While(
"(particles->state[pnum] == EVALUATE || particles->state[pnum] == REPEAT) || is_zero_dbl(particles->dt[pnum])",
c.Block(body))
part_loop = c.For(
"pnum = 0", "pnum < num_particles", "++pnum",
c.Block([
sign_end_part, reset_res_state, dt_pos, notstarted_continue,
time_loop
]))
fbody = c.Block([
c.Value("int", "pnum, sign_dt, sign_end_part"),
c.Value("StatusCode", "res"),
c.Value("double", "__pdt_prekernels"),
c.Value("double",
"__dt"), # 1e-8 = built-in tolerance for np.isclose()
sign_dt,
particle_backup,
part_loop
])
fdecl = c.FunctionDeclaration(c.Value("void", "particle_loop"), args)
ccode += [str(c.FunctionBody(fdecl, fbody))]
return "\n\n".join(ccode)
def generate(self, funcname, field_args, const_args, kernel_ast,
c_include):
ccode = []
# Add include for Parcels and math header
ccode += [str(c.Include("parcels.h", system=False))]
ccode += [str(c.Include("math.h", system=False))]
ccode += [str(c.Assign('double _next_dt', '0'))]
ccode += [str(c.Assign('size_t _next_dt_set', '0'))]
# Generate type definition for particle type
vdecl = []
for v in self.ptype.variables:
if v.dtype == np.uint64:
vdecl.append(c.Pointer(c.POD(np.void, v.name)))
else:
vdecl.append(c.POD(v.dtype, v.name))
ccode += [
str(
c.Typedef(
c.GenerableStruct("", vdecl, declname=self.ptype.name)))
]
args = [
c.Pointer(c.Value(self.ptype.name, "particle_backup")),
c.Pointer(c.Value(self.ptype.name, "particle"))
]
p_back_set_decl = c.FunctionDeclaration(
c.Static(
c.DeclSpecifier(c.Value("void", "set_particle_backup"),
spec='inline')), args)
body = []
for v in self.ptype.variables:
if v.dtype != np.uint64 and v.name not in ['dt', 'state']:
body += [
c.Assign(("particle_backup->%s" % v.name),
("particle->%s" % v.name))
]
p_back_set_body = c.Block(body)
p_back_set = str(c.FunctionBody(p_back_set_decl, p_back_set_body))
ccode += [p_back_set]
args = [
c.Pointer(c.Value(self.ptype.name, "particle_backup")),
c.Pointer(c.Value(self.ptype.name, "particle"))
]
p_back_get_decl = c.FunctionDeclaration(
c.Static(
c.DeclSpecifier(c.Value("void", "get_particle_backup"),
spec='inline')), args)
body = []
for v in self.ptype.variables:
if v.dtype != np.uint64 and v.name not in ['dt', 'state']:
body += [
c.Assign(("particle->%s" % v.name),
("particle_backup->%s" % v.name))
]
p_back_get_body = c.Block(body)
p_back_get = str(c.FunctionBody(p_back_get_decl, p_back_get_body))
ccode += [p_back_get]
update_next_dt_decl = c.FunctionDeclaration(
c.Static(
c.DeclSpecifier(c.Value("void", "update_next_dt"),
spec='inline')), [c.Value('double', 'dt')])
if 'update_next_dt' in str(kernel_ast):
body = []
body += [c.Assign("_next_dt", "dt")]
body += [c.Assign("_next_dt_set", "1")]
update_next_dt_body = c.Block(body)
update_next_dt = str(
c.FunctionBody(update_next_dt_decl, update_next_dt_body))
ccode += [update_next_dt]
if c_include:
ccode += [c_include]
# Insert kernel code
ccode += [str(kernel_ast)]
# Generate outer loop for repeated kernel invocation
args = [
c.Value("int", "num_particles"),
c.Pointer(c.Value(self.ptype.name, "particles")),
c.Value("double", "endtime"),
c.Value("float", "dt")
]
for field, _ in field_args.items():
args += [c.Pointer(c.Value("CField", "%s" % field))]
for const, _ in const_args.items():
args += [c.Value("float", const)]
fargs_str = ", ".join(['particles[p].time'] + list(field_args.keys()) +
list(const_args.keys()))
# Inner loop nest for forward runs
sign_dt = c.Assign("sign_dt", "dt > 0 ? 1 : -1")
particle_backup = c.Statement("%s particle_backup" % self.ptype.name)
sign_end_part = c.Assign("sign_end_part",
"endtime - particles[p].time > 0 ? 1 : -1")
dt_pos = c.Assign(
"__dt",
"fmin(fabs(particles[p].dt), fabs(endtime - particles[p].time))")
pdt_eq_dt_pos = c.Assign("__pdt_prekernels", "__dt * sign_dt")
partdt = c.Assign("particles[p].dt", "__pdt_prekernels")
dt_0_break = c.If("particles[p].dt == 0", c.Statement("break"))
notstarted_continue = c.If(
"(sign_end_part != sign_dt) && (particles[p].dt != 0)",
c.Statement("continue"))
body = [
c.Statement(
"set_particle_backup(&particle_backup, &(particles[p]))")
]
body += [pdt_eq_dt_pos]
body += [partdt]
body += [
c.Assign("res", "%s(&(particles[p]), %s)" % (funcname, fargs_str))
]
check_pdt = c.If(
"(res == SUCCESS) & (__pdt_prekernels != particles[p].dt)",
c.Assign("res", "REPEAT"))
body += [check_pdt]
body += [c.Assign("particles[p].state",
"res")] # Store return code on particle
update_pdt = c.If(
"_next_dt_set == 1",
c.Block([
c.Assign("_next_dt_set", "0"),
c.Assign("particles[p].dt", "_next_dt")
]))
body += [
c.If(
"res == SUCCESS || res == DELETE",
c.Block([
c.Statement("particles[p].time += particles[p].dt"),
update_pdt, dt_pos, dt_0_break,
c.Statement("continue")
]),
c.Block([
c.Statement(
"get_particle_backup(&particle_backup, &(particles[p]))"
), dt_pos,
c.Statement("break")
]))
]
time_loop = c.While("__dt > __tol || particles[p].dt == 0",
c.Block(body))
part_loop = c.For(
"p = 0", "p < num_particles", "++p",
c.Block([sign_end_part, notstarted_continue, dt_pos, time_loop]))
fbody = c.Block([
c.Value("int", "p, sign_dt, sign_end_part"),
c.Value("ErrorCode", "res"),
c.Value("float", "__pdt_prekernels"),
c.Value("double", "__dt, __tol"),
c.Assign("__tol", "1.e-6"), sign_dt, particle_backup, part_loop
])
fdecl = c.FunctionDeclaration(c.Value("void", "particle_loop"), args)
ccode += [str(c.FunctionBody(fdecl, fbody))]
return "\n\n".join(ccode)
