def start(site):
pid = os.getpid()
f = open("pid.txt", "w+")
f.write(str(pid))
f.close()
if len(site) == 0:
site = input("Paste the URL you want to check for updates: ")
from checker import check
check(site)
def check(p, options): e = classes.c_epita() e.parser = p e.options = options checker.check(e) errors.summary(e) return e.pure, e.detail, e.count
def process_script(args, source, title, expected_result=None):
if common.hasextension(source, '.py'):
checked, msg = checker.check(source)
else:
checked, msg = True, ''
if args.test:
if common.hasextension(source, '.py'):
return test_script(args, source, title, expected_result, checked, msg)
else:
print('numsed error: no reference to check with opcode script:', args.source)
return ''
elif checked is False:
print(msg)
return ''
else:
print(title)
conversion = numsed_conversion(args)
target = conversion(source, transformation(args))
if args.run:
x = target.run()
elif args.coverage:
x = target.coverage()
elif args.trace:
x = target.trace()
if args.run and args.sed:
# already printed
pass
else:
print(x)
return x
def table_gc_distribution(n, unit):
"""get the distribution of gc content in a table
n: same as table.n\n
unit: the length of a partition
"""
# init
partitions = np.zeros(floor(1 / unit) + 1, dtype=np.int32)
io = IO()
tablem = dnacode.get_table(n, io=io)
# start
count = 0
for func in tablem.en:
# print
if count % 16 < 15:
print(count, end=' ', flush=True)
else:
print(count, flush=True)
count += 1
#
for seq in func:
valid, gc = checker.check(seq, 2 * n)
partitions[floor(gc / unit)] += 1
return partitions
def graphic_solve():
display_time()
global remaining
if remaining == 0:
return True
for j in range(9):
for i in range(9):
if grid[i][j] == 0:
for n in range(1, 10):
# set_num(n, i, j, 'lightgreen')
# p.display.update()
if check(i, j, n, grid):
set_num(n, i, j, 'lightgreen')
p.display.update()
grid[i][j] = n
time.sleep(0.05)
remaining -= 1
if graphic_solve():
set_num(n, i, j, 'white')
p.display.update()
return True
remaining += 1
grid[i][j] = 0
set_num(0, i, j, 'firebrick1')
p.display.update()
time.sleep(0.05)
return False
return False
def client():
host, port = [input("Enter game host: "), int(input("And port: "))]
s = socket.socket()
while True:
try:
s.connect((host, port))
except Exception as e:
print("something's wrong with {}:{}. Exception is {}".format(host, port, e))
host, port = [input("Enter game host: "), int(input("And port: "))]
else:
print("Connection established")
break
my_code = input("Pick yout secret number: ")
my_code = numfunc.conv_num(my_code)
while True:
go_token = s.recv(1024).decode('utf-8')
print(go_token)
my_guess = input("Your guess? ")
my_guess = ''.join(numfunc.conv_num(my_guess))
s.send(my_guess.encode('utf-8'))
my_result = s.recv(1024).decode('utf-8')
if not my_result:
print("Correct")
break
print("{} -> {}M{}C".format(my_guess, my_result[0], my_result[1]))
s.send("Your turn".encode('utf-8'))
their_guess = s.recv(1024).decode('utf-8')
print("Their guess: {}".format(their_guess))
their_result = checker.check(numfunc.conv_num(their_guess), my_code.copy())
if not their_result:
print("You loose")
break
s.send(''.join(their_result).encode('utf-8'))
s.close()
def test_3x3():
albert, bradley, charles, diane, fergie, emily = 0, 1, 2, 0, 1, 2
p = {
'men': {
albert: [diane, emily, fergie],
bradley: [emily, diane, fergie],
charles: [diane, emily, fergie],
},
'women': {
diane: [bradley, albert, charles],
fergie: [albert, bradley, charles],
emily: [albert, bradley, charles],
},
'men_str': ['albert', 'bradley', 'charles'],
'women_str': ['diane', 'fergie', 'emily'],
}
guy = {
'albert': ['diane', 'emily', 'fergie'],
'bradley': ['emily', 'diane', 'fergie'],
'charles': ['diane', 'emily', 'fergie'],
}
girls = {
'diane': ['bradley', 'albert', 'charles'],
'fergie': ['albert', 'bradley', 'charles'],
'emily': ['albert', 'bradley', 'charles'],
}
res = solve(p)
assert check(guy, girls, solve(p))
assert res == {'diane': 'albert', 'emily': 'bradley', 'fergie': 'charles'}
def test_3x3_v2():
arie, bert, carl, ann, betty, cindy = 0, 1, 2, 0, 1, 2
p = {
'men': {
arie: [betty, ann, cindy],
bert: [ann, cindy, betty],
carl: [ann, cindy, betty],
},
'women': {
ann: [bert, arie, carl],
betty: [arie, carl, bert],
cindy: [bert, arie, carl]
},
'men_str': ['arie', 'bert', 'carl'],
'women_str': ['ann', 'betty', 'cindy'],
}
guy = {
'arie': ['betty', 'ann', 'cindy'],
'bert': ['ann', 'cindy', 'betty'],
'carl': ['ann', 'cindy', 'betty'],
}
girls = {
'ann': ['bert', 'arie', 'carl'],
'betty': ['arie', 'carl', 'bert'],
'cindy': ['bert', 'arie', 'carl'],
}
res = solve(p)
assert check(guy, girls, res)
assert res == {'betty': 'arie', 'ann': 'bert', 'cindy': 'carl'}
def run_scrap(update, context):
''' Executa manualmente o web scrap. '''
chat_id = update.message.chat_id
context.bot.send_message(
chat_id = chat_id,
text = 'Buscando...'
)
check()
context.bot.send_message(
chat_id = chat_id,
text = 'Busca finalizada.'
)
def process_script(args, source, expected_result=None):
checked, msg = checker.check(source)
if args.test:
return test_script(args, source, expected_result, checked, msg)
elif checked is False:
print(msg)
return ''
else:
conversion = numsed_conversion(args)
target = conversion(source, transformation(args))
if args.run:
x = target.run()
elif args.coverage:
x = target.coverage()
elif args.trace:
x = target.trace()
if args.run and args.sed:
# already printed
pass
else:
print(x)
return x
def check_arguments():
tid = request.form['tid']
games = int(request.form['games'])
moves = int(request.form['moves'])
title = request.form['title']
names = check(tid, games, moves, title)
flash(names)
return redirect(url_for('home'))
def play(self):
self.codes.remove(self.guess)
result = checker.check(list("{:004d}".format(self.guess)),
self.number.copy())
if not result:
print("Bot turn: {}. {:004d} -> correct!".format(
self.turn, self.guess))
return 0
print("Bot turn: {}. {:004d} -> {}M{}C".format(self.turn, self.guess,
result[0], result[1]))
self.codes = [
x for x in self.codes if result == checker.check(
list("{:004d}".format(x)), list("{:004d}".format(self.guess)))
]
self.guess = random.choice(self.codes)
self.turn += 1
return 1
def _update_target(self):
# Получаем значение, введённое пользователем.
value = check('value', self.value_label, self.value_entry)
selection = check('selection', label=self.list_label, lbox=self.targets_list)
if value is None or selection is None:
return
# Создаём курсор для взаимодействия с базой данных.
cursor = self.db_connection.cursor()
# Получаем название категории и её значение из базы данных.
element = cursor.execute('SELECT * FROM targets').fetchall()[selection]
name, current_value, target = element
current_value += value
cursor.execute('UPDATE targets SET current_value = ? WHERE name = ?', (current_value, name))
# Записываем изменения в базу данных.
self.db_connection.commit()
self.destroy()
def run_checker(problem_path):
checker_path = problem_path
sys.path.append(os.path.abspath(checker_path))
import checker
imp.reload(checker)
verdict = checker.check(problem_path)
print(checker.return_state())
sys.path.remove(os.path.abspath(checker_path))
return verdict
def moderator():
netloc = [urlparse.urlparse(sys.argv[0]).netloc, '']
if not infoLabel('Container.PluginName') in netloc: sys.exit()
import checker
error = checker.check()
if not error == None:
okDialog(lang(30523).encode('utf-8') % error)
return error
def main():
flags = dict()
check_counter = Counter()
put_counter = Counter()
get_counter = Counter()
get_rand_counter = Counter()
logging.basicConfig(level=logging.DEBUG,
filename="check-loop.log",
format="%(asctime)s %(name)s %(levelname)-8s %(message)s")
root_logger = logging.getLogger("loop")
round = 1
while True:
logger = logging.LoggerAdapter(root_logger, extra={"round": round})
round_start = time.monotonic()
logger.info("[%d] Starting round ...", round)
with MeasureTime(logger, "check"):
result = checker.check(HOST)
logger.info("[%d] Check result: %d", round, result)
check_counter[result] += 1
id = gen_id()
flag = gen_flag()
smth = 123
with MeasureTime(logger, "put"):
result = checker.put(HOST, id, flag, smth)
logger.info("[%d] put result: %d", round, result)
put_counter[result] += 1
if result == checker.ExitCode.OK:
flags[id] = flag
with MeasureTime(logger, "get"):
result = checker.get(HOST, id, flag, smth)
logger.info("[%d] get result: %d", round, result)
get_counter[result] += 1
rand_id, rand_flag = random.choice(list(flags.items()))
with MeasureTime(logger, "get_rand"):
result = checker.get(HOST, rand_id, rand_flag, smth)
logger.info("[%d] get_rand result: %d", round, result)
get_rand_counter[result] += 1
round_duration_ms = (time.monotonic() - round_start) * 1000
logger.info("[%d] Round end. Elapsed: %d ms. Flags: %d", round, round_duration_ms, len(flags))
summary_format = "[%d] Check: %s. Put: %s. Get: %s. Get_Rand: %s"
summary_args = (round, check_counter, put_counter, get_counter, get_rand_counter)
logger.info(summary_format, *summary_args)
print(summary_format % summary_args)
round += 1
def main():
user = '******'
password = '******'
print("Account:", user, password)
sites = checker.check(user, password)
for site in sites:
valid = sites[site]
print("Site:", site)
print("Account is", "valid" if valid else "invalid")
print()
def place(self, val):
red, stupac = self.selected
if self.celije[red][stupac].value == 0:
self.celije[red][stupac].set(val)
self.update_model()
if valid(self.model, val, (red, stupac)) and check(self.model):
return True
else:
self.celije[red][stupac].set(0)
self.celije[red][stupac].set_temp(0)
self.update_model()
return False
def run(self):
while not self.stopped.wait(300):
print(f"{colours.yellow}Commencing covid check for {self.country.lower().capitalize()}{colours.reset}")
cov = checker.check(self.country, self.epoch)
if cov['status'] == 200:
if cov['updated'] == True:
self.cases = cov['cases']
self.epoch = cov['epoch']
print(f"{colours.red}New Cases: {cov['cases'] - self.cases}{colours.reset}")
webhook.alert(self.url, self.country, self.cases, cov['cases'] - self.cases)
else:
print(f"{colours.green}Hooray! No new cases reported!{colours.reset}")
def verify_pacs(bi):
"""Take a list of rpm filenames and verify their signatures.
In case of failure, exit.
"""
pac_list = [i.fullfilename for i in bi.deps]
if not conf.config["builtin_signature_check"]:
return verify_pacs_old(pac_list)
if not pac_list:
return
if not bi.keys:
raise oscerr.APIError("can't verify packages due to lack of GPG keys")
print "using keys from", ", ".join(bi.prjkeys)
import checker
failed = False
checker = checker.Checker()
try:
checker.readkeys(bi.keys)
for pkg in pac_list:
try:
checker.check(pkg)
except Exception, e:
failed = True
print pkg, ":", e
except:
checker.cleanup()
raise
if failed:
checker.cleanup()
sys.exit(1)
checker.cleanup()
def generate_encode(self):
pq = []
for i in range(64):
for j in range(1 << (2 * self.n)):
rl, gc = checker.check(j, 2 * self.n)
gc = abs(gc - 0.5)
if rl and checker.is_legal_cat(i, j, 2 * self.n):
pq.append((gc, j))
shuffle(pq)
pq = sorted(pq, key=lambda x: x[0])
for k in range(self.en.shape[1]):
self.en[i, k] = pq[k][1]
pq.clear()
def verify_pacs(bi):
"""Take a list of rpm filenames and verify their signatures.
In case of failure, exit.
"""
pac_list = [i.fullfilename for i in bi.deps]
if not conf.config['builtin_signature_check']:
return verify_pacs_old(pac_list)
if not pac_list:
return
if not bi.keys:
raise oscerr.APIError("can't verify packages due to lack of GPG keys")
print "using keys from", ', '.join(bi.prjkeys)
import checker
failed = False
checker = checker.Checker()
try:
checker.readkeys(bi.keys)
for pkg in pac_list:
try:
checker.check(pkg)
except Exception, e:
failed = True
print pkg, ':', e
except:
checker.cleanup()
raise
if failed:
checker.cleanup()
sys.exit(1)
checker.cleanup()
def validate(self, source):
self.itpr = check(source)
diagnostics = []
logging.debug(f'itpr errors: {self.itpr.errors}')
for item in self.itpr.errors:
l1 = item['lineno'] - 1
c1 = item['col_offset']
l2 = item['end_lineno'] - 1
c2 = item['end_col_offset']
msg = item['error'].message
diagnostics.append(
Diagnostic(range=Range(Position(l1, c1), Position(l2, c2)),
message=msg,
source="PDChecker"))
return diagnostics
def test_incomp_5x5():
abe, bob, col, dan, ed = 0, 1, 2, 3, 4
abi, bea, cath, dee, eve = 0, 1, 2, 3, 4
p = {
'men': {
abe: [bea, dee, eve],
bob: [abi, cath],
col: [dee, bea, cath, eve, abi],
dan: [eve, cath, abi, dee],
ed: [dee, eve],
},
'women': {
abi: [bob, col, dan],
bea: [col, abe],
cath: [col, dan, bob],
dee: [ed, abe, dan, col],
eve: [abe, ed, col, dan],
},
'men_str': ["abe", "bob", "col", "dan", "ed"],
'women_str': ["abi", "bea", "cath", "dee", "eve"],
}
guyprefers = {
'abe': ['bea', 'dee', 'eve'],
'bob': ['abi', 'cath'],
'col': ['dee', 'bea', 'cath', 'eve', 'abi'],
'dan': ['eve', 'cath', 'abi', 'dee'],
'ed': ['dee', 'eve'],
}
galprefers = {
'abi': ['bob', 'col', 'dan'],
'bea': ['col', 'abe'],
'cath': ['col', 'dan', 'bob'],
'dee': ['ed', 'abe', 'dan', 'col'],
'eve': ['abe', 'ed', 'col', 'dan']
}
res = solve(p)
assert check(guyprefers, galprefers, res)
assert res == {
'cath': 'dan',
'abi': 'bob',
'bea': 'col',
'eve': 'abe',
'dee': 'ed'
}
def guess(self, coords, digit, autocheck):
if digit < 0 or digit > 9:
return False
if coords[0] > 8 or coords[0] < 0 or coords[1] > 8 or coords[1] < 0:
return False
if self.initial_box[coords] != 0:
return False
self.box[coords] = digit
if autocheck:
if not check(self.box):
self.box[coords] = 0
return False
self.full = isfull(self.box)
return True
async def on_message(message):
guild = client.get_guild(guild)
if message.author != client.user:
if message.channel.id == verify:
print(message.content)
splitter = message.content.split()
roll = splitter[-1]
name = " ".join(splitter[:-1])
channel = client.get_channel(log)
if check(name, roll):
await channel.send(
f"Name: {name}\nRoll:{roll}\nRegistered!\nReference User: <@{message.author.id}>"
)
await message.author.add_roles(guild.get_role(role1))
await message.author.add_roles(guild.get_role(role2))
else:
await channel.send(
f"Name: `{name}` and Roll: `{roll}` unmatched\nReference User: <@{message.author.id}>"
)
await message.delete()
def play_game(player_figure, computer_figure):
display_board()
while True:
player_position = player_move(player_figure)
checker.check()
if checker.check() == 1:
print(f"{player_figure} wins.")
break
else:
checker.check()
if checker.tie() == 0:
print("Tie.")
break
computer_move(computer_figure, player_figure)
checker.check()
if checker.check() == 1:
print(f"{computer_figure} wins.")
break
def crawl_table(request):
# 세션에서 저장해놓은 사용자 아이디와 비밀번호 가져오기
user_id = request.session['user_id']
user_pwd = request.session['user_pwd']
# 로그인 재진행
user_response, session = engine.login(user_id, user_pwd)
# 사용자 학과
user_depart = request.POST.get('major')
# 복수전공 확인 변수 ('True' / 'False' ) 로 들어옴
double_chk = bool(request.POST.get('double_chk'))
# 외국인 여부
foreigner = bool(request.POST.get('foreigner'))
# 학부 이름
depart_name = request.POST.get('depart_name')
depart_name = depart_name.replace('ㆍ', '').replace('▶', '')
if double_chk is True:
# 복수전공
double_major = request.POST.get('double_major')
else:
# 단일전공이면 False로 변경
double_major = False
table = engine.crawl_table(session)
result = checker.check(user_id[:4],
major_1=user_depart,
major_2=double_major,
foreigner=foreigner,
records=table,
depart_name=depart_name)
grade = ['교양학점', '본전공학점', '복수전공학점', '총학점']
context = {
'result': result,
'grade': grade,
}
return render(request, 'main/result.html', context)
def _generate(checked):
if checked == 81:
return True
for i in range(9):
for j in range(9):
if generator_grid[i][j] == 0:
row = list(range(1, 10))
for _ in range(9):
n = row.pop(randrange(0, len(row)))
if check(i, j, n, generator_grid):
generator_grid[i][j] = n
generator_solved[i][j] = n
checked += 1
if _generate(checked):
return True
generator_grid[i][j] = 0
generator_solved[i][j] = 0
checked -= 1
return False
return False
def raw_gc(n):
# init
gcs = np.zeros(64 * (1 << (2 * n - 1)), dtype=np.float)
io = IO()
tablem = dnacode.get_table(n, io=io)
# start
p = 0
row = 0
for func in tablem.en:
print(row % 16, end=' ', flush=True)
if row % 16 == 15:
print()
row += 1
for i in func:
valid, gc = checker.check(i, 2 * n)
gcs[p] = gc
p += 1
# end
return gcs
def iterate():
checker.setup()
links = getter.get_reddit_data()
token = commenter.reddit_authorize()
for link in links:
try:
url, tid = link["url"], link["id"]
print url, tid
fourchan_res = requests.head(url)
if fourchan_res.status_code != 200:
continue
if checker.check(tid):
continue
image = uploader.upload(url)
result = False
while not result:
result = commenter.comment(token,tid,image)
if result:
checker.add(tid)
checker.commit()
except Exception as e:
print sys.exc_info()
def iterate():
checker.setup()
links = getter.get_reddit_data()
token = commenter.reddit_authorize()
for link in links:
try:
url, tid = link["url"], link["id"]
print url, tid
fourchan_res = requests.head(url)
if fourchan_res.status_code != 200:
continue
if checker.check(tid):
continue
image = uploader.upload(url)
result = False
while not result:
result = commenter.comment(token, tid, image)
if result:
checker.add(tid)
checker.commit()
except Exception as e:
print sys.exc_info()
def _solve(grid, remaining):
if remaining == 0:
return True
global iteration
for i in range(9):
for j in range(9):
if grid[i][j] == 0:
for n in range(1, 10):
if check(i, j, n, grid):
iteration += 1
grid[i][j] = n
remaining -= 1
# print(*grid,sep = '\n')
# print('-----------------------')
# time.sleep(0.2)
if _solve(grid, remaining):
return True
remaining += 1
grid[i][j] = 0
return False
return False
'''
if len(p) == 8:
p[0] = [['if', p[3]], ['then', p[6]], ['else', p[7]]]
else:
p[0] = [['if', p[3]], ['then', p[6]]]
def p_else(p):
'''
else : ELSE block
'''
p[0] = [p[1], p[2]]
def p_error(p):
print('Unexpected token {0}'.format(p))
if __name__ == '__main__':
with open('input.txt', 'r') as fin:
data = ''.join(fin.readlines())
identifiers = check(data)[0]
parser = yacc.yacc(method='LALR')
result = parser.parse(data, lexer=lexer, debug=False, tracking=True)
if result and len(semantic_errors) == 0:
interpret_tree(result, 0)
start_pascal(get_full_python_code(interpret_pascal_mas_to_python(interpret_mas)))
if len(semantic_errors) > 0:
for _ in semantic_errors:
print(_)
for ch in s.show_channels():
i.add_channel(ch[1])
i.join_all()
while(1):
try:
buffer = i.IRC.recv(1024).decode("iso-2022-jp")
except UnicodeDecodeError as e:
buffer = "ERROR: UnicodeDecodeError"
msg = buffer.split()
print(msg)
#PING PONG
if msg[0] == "PING":
i.send_data("PONG %s" % msg[1])
if len(msg) >= 4 and msg[1] == "PRIVMSG":
check(buffer, msg, i, s)
"""
u_info = msg[0]
i_msg = buffer[buffer.find(buffer.split()[3])+1:]
spker = user.user()
spker.l_name = u_info[1:u_info.find("!")]
spker.n_name = u_info[(u_info.find("!")+2):u_info.find("@")]
if "[enter]#" in buffer:
j_ch = buffer[buffer.find("[enter]")+7:]
i.join(j_ch)
with s:
s.insert_channel(j_ch)
with s:
s.insert_channel(msg[2])
s.insert_log(spker.l_name, msg[1], msg[2], i_msg[1:])
"""
if n < nod: digit((n + 1), (10 * (sum+i)), nod) elif n == nod: # print "check unique: "+str(sum+i) if checkUniqueDigits(sum+i): guessList.append(sum+i) # print "ending loop: "+ str(n)+", "+ str(sum) + ", " + str(nod) # raw_input() done = False answer = sys.argv[1] maxGuesses = int(sys.argv[2]) noOfDigits = int(sys.argv[3]) noOfGuesses = 0 guessList = [] digit(1, 0, noOfDigits) if maxGuesses < 0: maxGuesses = 9999999 while not done and noOfGuesses < maxGuesses: guess = guessList.pop() #getNextGuess() noOfGuesses += 1 result = checker.check(answer, guess) print "Guess #"+str(noOfGuesses) + ": `" + str(guess) + "`; " + str(result) if result['bulls'] == noOfDigits: print "Well done!" done = True if not done: print "You have reached the maximum allowed guesses! The answer is: "+ str(answer)
def muscle_handler(cds, chromosome, est_contig,begin,end):
handle2 = open("/home/mamun/Desktop/opuntia.fasta", "w")
global value
global value1
global chrome
chrome=str(chromosome)
print "+++++++++++++++++++++++++++++++++++++++\n"
print chrome
print "+++++++++++++++++++++++++++++++++++++++\n"
# Step 1:
# Open opuntia.fasta as temporary file
# Write CDS and Chromosome one after another to that file
handle2.write(">CDS")
handle2.write("\n")
handle2.write(cds)
handle2.write("\n")
handle2.write(">Chromosome")
handle2.write("\n")
handle2.write(chrome)
handle2.write("\n")
handle2.close()
# Close the temporary file
#calling muscle_aligner() from checker.py
checker.muscle_aligner()
# calling cds_handler 1st time
# it returns CDS values after alignment
message=cds_handler()
value1=""
value=""
#TESTING validity
# sample.func()
# if beginning or end of the CDS contains any gap
# then call checker.x_and_y - here, 0 argument means I am handling CDS
# - for more details see checker.x_and_y
# remove the beginning and end gaps from the CDS sequence
# Then write the new CDS sequence, and Chromosome again to the temporary file
# - here, temporary file is opuntia.fasta
if(message[0]=="-" or message[:-1]=="-"):
value1=checker.x_and_y(0)
handle2 = open("/home/mamun/Desktop/opuntia.fasta", "w")
#chromosome=str(value)
handle2.write(">CDS")
handle2.write("\n")
handle2.write(cds)
handle2.write("\n")
handle2.write(">Chromosome")
handle2.write("\n")
print "Inside CDS and Chromosome"
print value1
handle2.write(value1)
handle2.close()
# else there will be no change in the chromosome
else:
print "CDS and Chromosome part is done!\n"
value1=chrome
#calling check() function to insert est contig into fasta file
value=checker.check(est_contig)
#aligning with all three (CDS, Chromosome, and EST Contig)
## checker.muscle_aligner()
print "\nHandler Number: 2\n"
#time.sleep(4)
# message1=cds_handler()
# argument 1 means, we are handling EST Contig in checker.x_and_y
# test=checker.x_and_y(1)
print "*********************************\n"
print "TESTing.........................\n"
# print test
#TESTING validity
# sample.func()
# if(message1[0]=="-" or message1[:-1]=="-"):
#value=checker.x_and_y(1)
print value
os.remove("/home/mamun/Desktop/opuntia.fasta")
# else:
# print "Life goes on!"
#time.sleep(3)
handle2 = open("/home/mamun/Desktop/opuntia.fasta", "w")
handle2.write(">CDS")
handle2.write("\n")
handle2.write(cds)
handle2.write("\n")
handle2.write(">Chromosome")
handle2.write("\n")
if (value1==""):
handle2.write(str(chrome))
else:
handle2.write(str(value1))
handle2.write("\n")
handle2.write(">"+est_contig)
handle2.write("\n")
print "Inside EST part"
print "Chrome......................"
print value1
print "EST.........................."
print value
#Getting first occurane position of ATG
if value.find('ATG'):
position=value.find('ATG')
temp_value=value[position:]
handle2.write(str(temp_value))
value=str(temp_value)
else:
handle2.write(str(value))
handle2.close()
checker.muscle_aligner()
print "COMPLETE ALIGNMENT is DONE"
message1=cds_handler()
if(message1[0]=="-" or message1[:-1]=="-"):
value=checker.x_and_y(1)
print value
print "Getting perfect EST\n"
#time.sleep(5)
handle2 = open("/home/mamun/Desktop/opuntia.fasta", "w")
handle2.write(">CDS")
handle2.write("\n")
handle2.write(cds)
handle2.write("\n")
handle2.write(">Chromosome")
handle2.write("\n")
if (value1==""):
handle2.write(str(chrome))
else:
handle2.write(str(value1))
handle2.write("\n")
handle2.write(">"+est_contig)
handle2.write("\n")
handle2.write(str(value))
handle2.close()
checker.muscle_aligner()
else:
print "We are really done!\n"
#time.sleep(3)
## Working with Amino Acid Alignment
# End of iteration and alignment
# Copying temp files to seperate Directory
shutil.copy2('opuntia.fasta','/home/mamun/Desktop/Output/'+est_contig+'.fasta')
shutil.copy2('opuntia.aln','/home/mamun/Desktop/Output/'+est_contig+'.aln')
handle2 = open("/home/mamun/Desktop/opuntia.fasta", "w")
coding_dna1 = Seq(cds, IUPAC.ambiguous_dna)
handle2.write(">CDS")
handle2.write("\n")
handle2.write(str(coding_dna1.translate()))
handle2.write("\n")
handle2.write("\n")
handle2.write(">Chromosome")
handle2.write("\n")
if (value1==""):
coding_dna2 = Seq(chrome, IUPAC.ambiguous_dna)
handle2.write(str(coding_dna2.translate()))
handle2.write("\n")
handle2.write("\n")
else:
coding_dna2 = Seq(value1, IUPAC.ambiguous_dna)
handle2.write(str(coding_dna2.translate()))
handle2.write("\n")
handle2.write("\n")
handle2.write(">"+est_contig)
handle2.write("\n")
coding_dna3 = Seq(value, IUPAC.ambiguous_dna)
if (coding_dna3!=""):
handle2.write(str(coding_dna3.translate()))
else:
handle2.write("")
handle2.close()
checker.muscle_aligner()
# Copyting current file to system!
shutil.copy2('opuntia.fasta','/home/mamun/Desktop/Output/'+est_contig+'_acid.fasta')
shutil.copy2('opuntia.aln','/home/mamun/Desktop/Output/'+est_contig+'_acid.aln')
def test_no_log_empty(self):
self.checker_returns('')
check('/config','achecker','aparam')
self.l.check()
def test_bad_checker(self):
from checker import check
check = should_raise(check,ImportError('No module named unknown'))
check('/config','unknown',None)
import requester as r
import checker as c
import user_requests as u
import json
c.desc = '#### get user before session is initialized'
res = u.get_user()
c.check(res.status_code == 401)
c.desc = '#### initialize session'
session_response = u.signin('admin', 'admin')
c.check(session_response.status_code == 200)
r.session = session_response.cookies
c.desc = '#### get user after session is initialized'
res = u.get_user()
c.check(res.status_code == 200)
c.check(json.loads(res.content)['username'] == 'admin')
c.check(json.loads(res.content)['user_id'] == 1)
c.check(json.loads(res.content)['password'] == '')
# c.desc = '#### create user with invalid input -- null username'
# res = u.create_user(None, "abcd")
# c.check(res.status_code > 400)
# c.desc = '#### create user with invalid input -- empty username, present pw'
# res = u.create_user('', 'abcd')
# c.check(res.status_code > 400)
# c.desc = '#### admin user exists'
# res = u.get_all_users()
def test_normal(self):
m = self.checker_returns('some output')
check('/config','achecker',None)
compare(m.call_args_list,[
(('checker.checkers.achecker.check',), {})
])
for i in xrange(lenA - lenB):
headA = headA.next
elif lenB > lenA:
for i in xrange(lenB - lenA):
headB = headB.next
while headA is not headB:
headA, headB = headA.next, headB.next
return headA
if __name__ == '__main__':
import checker
a = [ListNode(i) for i in xrange(2)]
b = [ListNode(i) for i in xrange(3)]
c = [ListNode(i) for i in xrange(3)]
headA, headB = a[0], b[0]
a[0].next = a[1]
a[1].next = c[0]
c[0].next = c[1]
c[1].next = c[2]
b[0].next = b[1]
b[1].next = b[2]
b[2].next = c[0]
cases = (
{'args': (headA, headB), 'result': c[0]},
{'args': (ListNode(0), ListNode(1)), 'result': None},
)
checker.check(Solution().getIntersectionNode, cases)
def test_log_newline(self):
self.checker_returns('some output\n')
check('/config','achecker','aparam')
self.l.check(
('root', 'INFO', 'some output'),
)
"""Solution for problem https://leetcode.com/problems/valid-anagram/
The main idea is to count letters in each string and compare results.
"""
from collections import Counter
class Solution(object):
def isAnagram(self, s, t):
"""
:type s: str
:type t: str
:rtype: bool
"""
s_counter, t_counter = Counter(s), Counter(t)
for ch, count in s_counter.iteritems():
if s_counter[ch] != t_counter[ch]:
return False
return len(s) == len(t)
if __name__ == '__main__':
import checker
cases = (
{'args': ("anagram", "nagaram"), 'result': True},
{'args': ("rat", "car"), 'result': False},
)
checker.check(Solution().isAnagram, cases)
def begin_checking(data, task):
ident = os.urandom(10).encode('hex')
out_list = []
events[ident] = out_list
gevent.spawn(lambda: checker.check(task, data, out_list.append))
return ident
def OnCheckPSP(self, event):
"Find defects and errors, if complete, change to the next phase"
evt_id = event.GetId()
if evt_id == ID_COMPILE:
self.SetPSPPhase('compile')
elif evt_id == ID_TEST:
self.SetPSPPhase('test')
if self.active_child:
phase = self.GetPSPPhase()
defects = [] # static checks and failed tests
errors = [] # sanity checks (planning & postmortem)
if phase == "planning":
# check plan summary completeness
for phase, times in self.psptimetable.cells.items():
if not times['plan']:
errors.append("Complete %s estimate time!" % phase)
elif phase == "design" or phase == "code":
#TODO: review checklist?
pass
elif phase == "compile":
# run "static" chekers to find coding defects (pep8, pyflakes)
import checker
defects.extend(checker.check(self.active_child.GetFilename()))
elif phase == "test":
# run doctests to find defects
import tester
defects.extend(tester.test(self.active_child.GetFilename()))
elif phase == "postmortem":
# check that all defects are fixed
for defect in self.psp_defect_list.data.values():
if not defect['remove_phase']:
errors.append("Defect %(number)s not fixed!" % defect)
# add found defects (highlight them in the editor window)
line_numbers = set()
for defect in defects:
self.NotifyDefect(**defect)
errors.append("Defect found: %(summary)s" % defect)
if defect['lineno'] is not None:
line_numbers.add(defect['lineno'])
self.active_child.HighlightLines(line_numbers)
# show errors
if errors:
dlg = wx.MessageDialog(self, "\n".join(errors),
"PSP Check Phase Errors", wx.ICON_EXCLAMATION | wx.OK)
dlg.ShowModal()
dlg.Destroy()
self._mgr.GetPane("psp_defects").Show(True)
self._mgr.Update()
# phase completed? project completed?
if not defects and not errors:
i = PSP_PHASES.index(phase) + 1
if i < len(PSP_PHASES):
phase = PSP_PHASES[i]
else:
phase = ""
self.OnStopPSP(event)
self.SetPSPPhase(phase)
else:
dlg = wx.MessageDialog(self, "No active file, cannot check it.\n"
"Change PSP phase manually if desired.",
"PSP Check Phase Errors", wx.ICON_EXCLAMATION)
dlg.ShowModal()
dlg.Destroy()
import json
import urllib2
import checker
import tripleLoader
def writeReport(report, pathBase):
with open(pathBase + '.json', 'w+') as reportf:
json.dump(report, reportf)
with open(pathBase + '.jsonp', 'w+') as reportpf:
reportpf.write('callback(' + json.dumps(report) + ')')
contribNames = sorted(json.loads(file(sys.argv[3]).read())['dirs'])
allSupportedClaferFeatures = sorted(json.loads(file(sys.argv[1]).read()))
summary = {}
# load features and convert to clafer names
rawFeatureTriples = tripleLoader.load("Namespace-3AFeature")
instanceOfURL = 'http://101companies.org/property/instanceOf'
namespaceURL = 'http://101companies.org/resource/Namespace-3ANamespace'
featureTriples = filter(lambda t : t['predicate'] == instanceOfURL and (t['node'] != namespaceURL), rawFeatureTriples)
allClaferFeatures = map(lambda t : tripleLoader.urlToClafer(t['node'], 'Feature-3A'), featureTriples)
claferTreeRaw = urllib2.urlopen('http://data.101companies.org/dumps/features.clf.json')
claferTree = json.load(claferTreeRaw)['structure']
# check all contributions
for contribName in contribNames:
print 'Checking ' + contribName + '...',
report = checker.check(contribName, claferTree, allSupportedClaferFeatures, sys.argv[2])
print 'done.'
writeReport(report, sys.argv[4] + sys.argv[5] + contribName)
summary[contribName] = report
writeReport(summary, sys.argv[4] + 'featureModelReport')
