def load_checkpoint(path: str,
device: torch.device = None,
logger: logging.Logger = None) -> MoleculeModel:
"""
Loads a model checkpoint.
:param path: Path where checkpoint is saved.
:param device: Device where the model will be moved.
:param logger: A logger for recording output.
:return: The loaded :class:`~chemprop.models.model.MoleculeModel`.
"""
if logger is not None:
debug, info = logger.debug, logger.info
else:
debug = info = print
# Load model and args
state = torch.load(path, map_location=lambda storage, loc: storage)
args = TrainArgs()
args.from_dict(vars(state['args']), skip_unsettable=True)
loaded_state_dict = state['state_dict']
if device is not None:
args.device = device
# Build model
model = MoleculeModel(args)
model_state_dict = model.state_dict()
# Skip missing parameters and parameters of mismatched size
pretrained_state_dict = {}
for loaded_param_name in loaded_state_dict.keys():
# Backward compatibility for parameter names
if re.match(r'(encoder\.encoder\.)([Wc])', loaded_param_name):
param_name = loaded_param_name.replace('encoder.encoder', 'encoder.encoder.0')
else:
param_name = loaded_param_name
# Load pretrained parameter, skipping unmatched parameters
if param_name not in model_state_dict:
info(f'Warning: Pretrained parameter "{loaded_param_name}" cannot be found in model parameters.')
elif model_state_dict[param_name].shape != loaded_state_dict[loaded_param_name].shape:
info(f'Warning: Pretrained parameter "{loaded_param_name}" '
f'of shape {loaded_state_dict[loaded_param_name].shape} does not match corresponding '
f'model parameter of shape {model_state_dict[param_name].shape}.')
else:
debug(f'Loading pretrained parameter "{loaded_param_name}".')
pretrained_state_dict[param_name] = loaded_state_dict[loaded_param_name]
# Load pretrained weights
model_state_dict.update(pretrained_state_dict)
model.load_state_dict(model_state_dict)
if args.cuda:
debug('Moving model to cuda')
model = model.to(args.device)
return model
def load_checkpoint(path: str,
device: torch.device = None,
logger: logging.Logger = None,
template=None) -> MoleculeModel:
"""
Loads a model checkpoint.
:param path: Path where checkpoint is saved.
:param device: Device where the model will be moved.
:param logger: A logger.
:return: The loaded MoleculeModel.
"""
if logger is not None:
debug, info = logger.debug, logger.info
else:
debug = info = print
# Load model and args
state = torch.load(path, map_location=lambda storage, loc: storage)
args = TrainArgs()
args.from_dict(vars(state['args']), skip_unsettable=True)
loaded_state_dict = state['state_dict']
if device is not None:
args.device = device
# Build model
if template is not None:
model = template
else:
model = MoleculeModel(args)
model_state_dict = model.state_dict()
# Skip missing parameters and parameters of mismatched size
pretrained_state_dict = {}
for param_name in loaded_state_dict.keys():
if param_name not in model_state_dict:
info(
f'Warning: Pretrained parameter "{param_name}" cannot be found in model parameters.'
)
elif model_state_dict[param_name].shape != loaded_state_dict[
param_name].shape:
info(
f'Warning: Pretrained parameter "{param_name}" '
f'of shape {loaded_state_dict[param_name].shape} does not match corresponding '
f'model parameter of shape {model_state_dict[param_name].shape}.'
)
else:
#debug(f'Loading pretrained parameter "{param_name}".')
pretrained_state_dict[param_name] = loaded_state_dict[param_name]
# Load pretrained weights
model_state_dict.update(pretrained_state_dict)
model.load_state_dict(model_state_dict)
if args.cuda:
debug('Moving model to cuda')
model = model.to(args.device)
return model
