def test_cli_preprocessing():
parser = cli.parse_command_line()
args = parser.parse_args([
'preprocessing', '/dir/bids', '/dir/caps', '/dir/tsv.file',
'/dir/work/dir'
])
arguments = vars(args)
assert (arguments["bids_directory"] == "/dir/bids"
and arguments["caps_dir"] == "/dir/caps"
and arguments["tsv_file"] == "/dir/tsv.file"
and arguments["working_directory"] == "/dir/work/dir")
def test_cli(generate_cli_commands):
import re
test_input = generate_cli_commands[0]
keys_output = generate_cli_commands[1]
print('Value of test_input is:', type(test_input), test_input)
regex = re.compile(r'\-.*$')
test_input_filtered = [i for i in test_input if not regex.match(i)]
parser = cli.parse_command_line()
args = parser.parse_args(test_input)
arguments = vars(args)
outputs = [str(arguments[x]) for x in keys_output]
print(outputs)
assert outputs == test_input_filtered
def test_cli_extract():
parser = cli.parse_command_line()
patch_size = 50
stride_size = 50
extract_method = 'slice'
slice_direction = 0
slice_mode = 'rgb'
args = parser.parse_args([
'extract', '/dir/caps', '/dir/tsv.file', '/dir/work/dir',
extract_method, '-psz', '50', '-ssz', '50', '-sd', '0', '-sm',
slice_mode
])
arguments = vars(args)
assert (arguments["caps_dir"] == "/dir/caps"
and arguments["tsv_file"] == "/dir/tsv.file"
and arguments["patch_size"] == patch_size
and arguments["stride_size"] == stride_size
and arguments["working_directory"] == "/dir/work/dir"
and arguments["extract_method"] == extract_method
and arguments["slice_direction"] == slice_direction
and arguments["slice_mode"] == slice_mode)
def test_cli_train_svn():
parser = cli.parse_command_line()
pass
