def sync_primary_row(legacy_row):
plate_name = legacy_row[0]
well = get_three_character_well(legacy_row[1])
clone_name = legacy_row[2]
parent_plate_name = legacy_row[4]
if re.match('sjj', clone_name):
parent_chromosome = legacy_row[3]
parent_plate_name = generate_ahringer_384_plate_name(
parent_chromosome, parent_plate_name)
parent_well_improper = legacy_row[5]
if re.match('mv', clone_name):
clone_name = generate_vidal_clone_name(parent_plate_name,
parent_well_improper)
intended_clone = get_clone(clone_name)
if re.match('L4440', clone_name):
parent_stock = None
else:
parent_well_proper = get_three_character_well(parent_well_improper)
parent_stock = get_library_stock(parent_plate_name,
parent_well_proper)
# Confirm that this intended clone matches parent's clone
if parent_stock.intended_clone != intended_clone:
raise CommandError('Clone {} does not match parent\n'
.format(clone_name))
new_well = LibraryStock(
id=generate_library_stock_name(plate_name, well),
plate=get_library_plate(plate_name), well=well,
parent_stock=parent_stock,
intended_clone=intended_clone)
return update_or_save_object(command, new_well, recorded_wells,
fields_to_compare)
def sync_source_row(legacy_row):
plate_name = legacy_row[0]
clone_name = legacy_row[3]
if re.match('sjj', clone_name):
chromosome = legacy_row[2]
plate_name = generate_ahringer_384_plate_name(
chromosome, plate_name)
well_improper = legacy_row[1]
well_proper = get_three_character_well(well_improper)
if re.match('mv', clone_name):
clone_name = generate_vidal_clone_name(plate_name,
well_improper)
new_well = LibraryStock(
id=generate_library_stock_name(plate_name, well_proper),
plate=get_library_plate(plate_name), well=well_proper,
parent_stock=None, intended_clone=get_clone(clone_name))
return update_or_save_object(command, new_well, recorded_wells,
fields_to_compare)
def sync_clone_row_vidal(legacy_row):
vidal_clone_name = generate_vidal_clone_name(legacy_row[0],
legacy_row[1])
new_clone = Clone(id=vidal_clone_name)
return update_or_save_object(command, new_clone, recorded_clones,
fields_to_compare)