def test_init_degen(self):
"""make_pairs should add in degenerate combinations as weak pairs"""
p = make_pairs(self.pairs, 'AUG', '-', {
'R': 'AG',
'Y': 'CU',
'W': 'AU'
})
self.assertNotEqual(p, self.pairs)
self.pairs.update({
('-', '-'): False,
('A', 'Y'): False,
('Y', 'A'): False,
('A', 'W'): False,
('W', 'A'): False,
('U', 'R'): False,
('R', 'U'): False,
('U', 'W'): False,
('W', 'U'): False,
('G', 'Y'): False,
('G', 'W'): False,
('R', 'Y'): False,
('R', 'W'): False,
('Y', 'R'): False,
('Y', 'W'): False,
('W', 'R'): False,
('W', 'Y'): False,
('W', 'W'): False,
})
self.assertEqual(p, self.pairs)
def test_init_degen(self):
"""make_pairs should add in degenerate combinations as weak pairs"""
p = make_pairs(self.pairs, 'AUG','-', {'R':'AG','Y':'CU','W':'AU'})
self.assertNotEqual(p, self.pairs)
self.pairs.update({
('-','-'):False,
('A','Y'):False,
('Y','A'):False,
('A','W'):False,
('W','A'):False,
('U','R'):False,
('R','U'):False,
('U','W'):False,
('W','U'):False,
('G','Y'):False,
('G','W'):False,
('R','Y'):False,
('R','W'):False,
('Y','R'):False,
('Y','W'):False,
('W','R'):False,
('W','Y'):False,
('W','W'):False,
})
self.assertEqual(p, self.pairs)
def test_init_gaps(self):
"""make_pairs should add all combinations of gaps as weak pairs"""
p = make_pairs(self.pairs, None, '-~')
self.assertNotEqual(p, self.pairs)
self.pairs.update({('~','~'):False,('-','~'):False,('-','-'):False,
('~','-'):False})
self.assertEqual(p, self.pairs)
def test_init_gaps(self):
"""make_pairs should add all combinations of gaps as weak pairs"""
p = make_pairs(self.pairs, None, '-~')
self.assertNotEqual(p, self.pairs)
self.pairs.update({('~','~'):False,('-','~'):False,('-','-'):False,
('~','-'):False})
self.assertEqual(p, self.pairs)
def test_init_monomers(self):
"""make_pairs with pairs and monomers should equal just the pairs"""
self.assertEqual(make_pairs(self.pairs, 'ABCDEFG'), self.pairs)
self.assertNotSameObj(make_pairs(self.pairs, 'ABCDEFG'), self.pairs)
def test_init_pairs(self):
"""make_pairs with just pairs should equal the original"""
self.assertEqual(make_pairs(self.pairs), self.pairs)
self.assertNotSameObj(make_pairs(self.pairs), self.pairs)
def test_init_empty(self):
"""make_pairs should init ok with no parameters"""
self.assertEqual(make_pairs(), {})
def test_init_monomers(self):
"""make_pairs with pairs and monomers should equal just the pairs"""
self.assertEqual(make_pairs(self.pairs, 'ABCDEFG'), self.pairs)
self.assertNotSameObj(make_pairs(self.pairs, 'ABCDEFG'), self.pairs)
def test_init_pairs(self):
"""make_pairs with just pairs should equal the original"""
self.assertEqual(make_pairs(self.pairs), self.pairs)
self.assertNotSameObj(make_pairs(self.pairs), self.pairs)
def test_init_empty(self):
"""make_pairs should init ok with no parameters"""
self.assertEqual(make_pairs(), {})
