def test_bases(self):
"""AminoAcidUsage bases should return most likely base freqs"""
a = AminoAcidUsage('GGG')
self.assertEqual(a.bases(),
{'G':9.0/12,'U':1.0/12,'C':1.0/12,'A':1.0/12})
a = AminoAcidUsage('CAGTWERQWE')
exp = a.codons().bases()
exp.normalize()
self.assertFloatEqual(a.bases(), exp)
def test_bases(self):
"""AminoAcidUsage bases should return most likely base freqs"""
a = AminoAcidUsage('GGG')
self.assertEqual(a.bases(), {
'G': 9.0 / 12,
'U': 1.0 / 12,
'C': 1.0 / 12,
'A': 1.0 / 12
})
a = AminoAcidUsage('CAGTWERQWE')
exp = a.codons().bases()
exp.normalize()
self.assertFloatEqual(a.bases(), exp)