def delete_nodes(graph, nodes):
g = Hgraph()
for p, r, ch in graph.triples():
if (p not in nodes) and (not (len(ch) == 1 and ch[0] in nodes)):
g._add_triple(p, r, ch, warn=False)
else:
if (p not in nodes) and (p not in g):
g[p] = ListMap()
if len(ch) == 1 and (ch[0] not in nodes) and (ch[0] not in g):
g[ch[0]] = ListMap()
g.roots = g.find_roots(warn=False)
return g
def to_hgraph(self):
from common.hgraph.hgraph import Hgraph
hgraph = Hgraph()
hgraph.my_hyper_graph = self
for node in self.nodes: # type: GraphNode
label = ""
ext_id = None
ident = "_" + node.name
# Insert a node into the AMR
ignoreme = hgraph[ident] # Initialize dictionary for this node
hgraph.node_to_concepts[ident] = label
if ext_id is not None:
if ident in hgraph.external_nodes and hgraph.external_nodes[
ident] != ext_id:
raise Exception(
"Incompatible external node IDs for node %s." % ident)
hgraph.external_nodes[ident] = ext_id
hgraph.rev_external_nodes[ext_id] = ident
if node.is_root:
hgraph.roots.append(ident)
for edge in self.edges: # type: HyperEdge
hyperchild = tuple("_" + node.name for node in edge.nodes[1:])
ident = "_" + edge.nodes[0].name
new_edge = edge.label
hgraph._add_triple(ident, new_edge, hyperchild)
return hgraph
def get_line_graph(graph):
lgraph = Hgraph()
edges_for_node = defaultdict(list)
for p, r, ch in graph.triples():
edges_for_node[p].append(str((p, r, ch)))
for c in ch:
edges_for_node[c].append(str((p, r, ch)))
for r in edges_for_node:
for p, c in itertools.combinations(edges_for_node[r], 2):
lgraph._add_triple(p, r, (c,), warn=False)
lgraph._add_triple(c, r, (p,), warn=False)
lgraph.roots = lgraph.find_roots()
return lgraph
def parse_bitexts(self, pair_iterator):
"""
Parse all pairs of input objects returned by the pair iterator.
This is a generator.
"""
for line1, line2 in pair_iterator:
if self.grammar.rhs1_type == "hypergraph":
obj1 = Hgraph.from_string(line1)
else:
obj1 = line1.strip().split()
if self.grammar.rhs2_type == "hypergraph":
obj2 = Hgraph.from_string(line2)
else:
obj2 = line2.strip().split()
raw_chart = self.parse_bitext(obj1, obj2)
yield cky_chart(raw_chart)
def combiner(item, childobjs):
graph = leaf(item)
for nt, cgraph in childobjs.items():
p,r,c = graph.find_nt_edge(*nt)
fragment = Hgraph.from_triples([(p,r,c)],graph.node_to_concepts)
try:
graph = graph.replace_fragment(fragment, cgraph)
except AssertionError, e:
raise DerivationException, "Incompatible hyperedge type for nonterminal %s." % str(nt[0])
def parse_bitexts(self, pair_iterator):
"""
Parse all pairs of input objects returned by the pair iterator.
This is a generator.
"""
for line1, line2 in pair_iterator:
if self.grammar.rhs1_type == "hypergraph":
obj1 = Hgraph.from_string(line1)
else:
obj1 = line1.strip().split()
if self.grammar.rhs2_type == "hypergraph":
obj2 = Hgraph.from_string(line2)
else:
obj2 = line2.strip().split()
raw_chart = self.parse_bitext(obj1, obj2)
yield cky_chart(raw_chart)
def combiner(item, childobjs):
graph = leaf(item)
for nt, cgraph in childobjs.items():
p, r, c = graph.find_nt_edge(*nt)
fragment = Hgraph.from_triples([(p, r, c)], graph.node_to_concepts)
try:
graph = graph.replace_fragment(fragment, cgraph)
except AssertionError, e:
raise DerivationException, "Incompatible hyperedge type for nonterminal %s." % str(
nt[0])
def get_binarized_partitions(graph, edgesets):
if len(edgesets) == 1:
yield [graph.triples()]
return
gen = get_partitions(graph, edgesets[0], [edge for edgeset in edgesets[1:] for edge in edgeset])
for left_edges, right_edges in gen:
possibilities = get_binarized_partitions(Hgraph.from_triples(right_edges, {}, warn=False), edgesets[1:])
poss_list = list(possibilities)
for partitions in poss_list:
yield [left_edges] + partitions
def compute_chart(
tree, graph, prefix=""
): # Recursively compute the chart. Graph is the sub-graph we're considering, tree is the tree of spans.
count[0] += 1
triples = set(graph.triples())
edge_vector = tuple([1 if x in triples else 0 for x in graph_edge_list])
leaves = tree.leaves()
# if not isinstance(tree,fancy_tree.FancyTree):
# triples = set(graph.triples())
# edge_vector= tuple(1 for x in graph_edge_list if x in triples else 0)
# return Partition(tree.node, leaves[0], leaves[-1], edge_vector)
# else:
if len(tree) == 1 and not isinstance(tree[0], fancy_tree.FancyTree):
return Partition(tree.node, leaves[0], leaves[-1], edge_vector)
# First get the set of aligned edges for this constituent and it's children
aligned_edges_for_span = set([edge for token in tree.leaves() for edge in rev_alignments[token]])
partition_object = Partition(tree.node, leaves[0], leaves[-1], edge_vector)
if partition_object not in chart:
try:
possibilities = []
child_edgesets = []
# Compute edge set for each child
for t in tree:
edgeset = []
for l in t.leaves():
edgeset.extend(rev_alignments[l])
child_edgesets.append(edgeset)
# For each possible partitioning
for cparts in get_binarized_partitions(graph, child_edgesets):
child_forests = []
for i in range(len(tree)):
childgraph = Hgraph.from_triples(cparts[i], {}, warn=False)
sub_forest = compute_chart(tree[i], childgraph, prefix=prefix + " ")
if len(chart) > MAX_CHART_SIZE:
raise ChartTooBigException, "Chart size exceeded 5000 entries. dropping this sentence."
child_forests.append(sub_forest)
possibilities.append(child_forests)
chart[partition_object] = possibilities
except IncompatibleAlignmentException:
chart.inconsistent_alignment = (tree.node, leaves[0], leaves[-1])
return partition_object
return partition_object
def test():
tree = FancyTree("""
(S
(NP (DT The) (NN boy))
(VP (VBZ wants)
(NP (DT the) (NN girl)
(S
(VP (TO to)
(VP (VB believe)
(NP (PRP him)))))))
(. .))""")
graph = Hgraph.from_string(
"(w.want :arg0 b.boy :arg1 (b2.believe :arg0 (g.girl) :arg1 b.))")
graph.node_alignments = {"b": [1], "w": [2], "g": [4], "b2": [6]}
graph = graph.to_instance_edges()
def test():
tree = FancyTree(
"""
(S
(NP (DT The) (NN boy))
(VP (VBZ wants)
(NP (DT the) (NN girl)
(S
(VP (TO to)
(VP (VB believe)
(NP (PRP him)))))))
(. .))"""
)
graph = Hgraph.from_string("(w.want :arg0 b.boy :arg1 (b2.believe :arg0 (g.girl) :arg1 b.))")
graph.node_alignments = {"b": [1], "w": [2], "g": [4], "b2": [6]}
graph = graph.to_instance_edges()
def get_binarized_partitions(graph, edgesets):
if len(edgesets) == 1:
yield [graph.triples()]
return
gen = get_partitions(
graph, edgesets[0],
[edge for edgeset in edgesets[1:] for edge in edgeset])
for left_edges, right_edges in gen:
possibilities = get_binarized_partitions(
Hgraph.from_triples(right_edges, {}, warn=False), edgesets[1:])
poss_list = list(possibilities)
for partitions in poss_list:
yield [left_edges] + partitions
def delete_nodes(graph, nodes):
g = Hgraph()
for p, r, ch in graph.triples():
if (p not in nodes) and (not (len(ch) == 1 and ch[0] in nodes)):
g._add_triple(p, r, ch, warn=False)
else:
if (p not in nodes) and (p not in g):
g[p] = ListMap()
if len(ch) == 1 and (ch[0] not in nodes) and (ch[0] not in g):
g[ch[0]] = ListMap()
g.roots = g.find_roots(warn=False)
return g
def merge_string_nonterminals(self, string, amr, next_id):
"""
Binarizes a string-graph pair consisting entirely of nonterminals, ensuring
correct visit order for parsing.
"""
rules = []
stack = []
tokens = list(reversed([s for s in string if s]))
# standard shift-reduce binarization algorithm
# TODO add citation after paper is published
while tokens:
next_tok = tokens.pop()
next_tok_triple_l = [t for t in amr.triples() if str(t[1]) == next_tok]
assert len(next_tok_triple_l) == 1
next_tok_triple = next_tok_triple_l[0]
if not stack:
stack.append(next_tok)
continue
stack_top = stack.pop()
stack_top_triple = [t for t in amr.triples() if str(t[1]) == stack_top][0]
if (stack_top_triple[0] not in next_tok_triple[2]) and \
(next_tok_triple[0] not in stack_top_triple[2]):
# can't merge, so shift
stack.append(stack_top)
stack.append(next_tok)
continue
# can merge, so reduce
rule_amr = Hgraph.from_triples([stack_top_triple, next_tok_triple])
assert len(rule_amr.roots) == 1
rule_string = [stack_top, next_tok]
fictitious_tree = self.make_fictitious_tree(string, rule_string)
new_rule, tree, amr, next_id = self.make_rule(fictitious_tree, amr,
Tree('X', rule_string), rule_amr, next_id)
string = tree.leaves()
tokens.append('#%s' % new_rule.symbol)
rules.append(new_rule)
if len(stack) > 1:
raise BinarizationException
return string, amr, rules, next_id
def replace_instance_edges(graph, tree):
t = []
alignments = {}
tree_leaves = tree.leaves()
for e in graph.triples():
if e in graph.edge_alignments:
p, r, ch = e
token = graph.edge_alignments[e][0] # TODO: not sure what to do with multiple tokens
new_edge = (p, "%s'" % tree_leaves[token], ch)
t.append(new_edge)
alignments[new_edge] = [token]
else:
t.append(e)
res = Hgraph.from_triples(t, {}, warn=False)
res.edge_alignments = alignments
res.node_alignments = graph.node_alignments
res.roots = graph.roots
res.external_nodes = graph.external_nodes
return res
def collapse_amr_terminals(self, tree, amr, next_id):
"""
Creates new rules by merging terminal subgraphs with their closest
nonterminal edge.
"""
# triples returns in breadth-first order, so first triples in the list are
# closest to the root of the AMR
nonterminals = list(reversed([t for t in amr.triples() if isinstance(t[1],
NonterminalLabel)]))
rules = []
first = True
while nonterminals:
nt = nonterminals.pop()
# in general, we will attach to a given nonterminal edge all of the
# terminal edges reachable from its tail nodes
attached_terminals = self.terminal_search(nt, amr.triples())
if first:
# we still have to handle terminal edges that are higher than any
# nonterminal edge
# because the first nonterminal edge is closest to the root of the AMR,
# it must be reachable from the root without passing through any other
# nonterminal, so we can attach all the high terminals (those reachable
# from the root) to the first nonterminal
attached_terminals |= self.terminal_search(amr.root_edges()[0],
amr.triples())
attached_terminals |= {amr.root_edges()[0]}
first = False
# don't bother making a rule when there's nothing to collapse
if not attached_terminals:
continue
rule_amr = Hgraph.from_triples({nt} | attached_terminals)
rule_tree = str(nt[1])
assert len(rule_amr.roots) == 1
new_rule, tree, amr, next_id = self.make_rule(tree, amr, rule_tree,
rule_amr, next_id)
rules.append(new_rule)
return tree, amr, rules, next_id
def replace_instance_edges(graph, tree):
t = []
alignments = {}
tree_leaves = tree.leaves()
for e in graph.triples():
if e in graph.edge_alignments:
p, r, ch = e
token = graph.edge_alignments[e][
0] # TODO: not sure what to do with multiple tokens
new_edge = (p, "%s'" % tree_leaves[token], ch)
t.append(new_edge)
alignments[new_edge] = [token]
else:
t.append(e)
res = Hgraph.from_triples(t, {}, warn=False)
res.edge_alignments = alignments
res.node_alignments = graph.node_alignments
res.roots = graph.roots
res.external_nodes = graph.external_nodes
return res
def rhs_to_hgraph(self):
from common.cfg import NonterminalLabel
from common.hgraph.hgraph import Hgraph
nt_id_count = 0
hgraph = Hgraph()
for node in self.rhs.nodes: # type: GraphNode
label = ""
try:
ext_id = self.lhs.nodes.index(node)
except ValueError:
ext_id = None
ident = "_" + node.name
# Insert a node into the AMR
ignoreme = hgraph[ident] # Initialize dictionary for this node
hgraph.node_to_concepts[ident] = label
if ext_id is not None:
if ident in hgraph.external_nodes and hgraph.external_nodes[
ident] != ext_id:
raise Exception(
"Incompatible external node IDs for node %s." % ident)
hgraph.external_nodes[ident] = ext_id
hgraph.rev_external_nodes[ext_id] = ident
if ext_id == 0:
hgraph.roots.append(ident)
for edge in self.rhs.edges: # type: HyperEdge
hyperchild = tuple("_" + node.name for node in edge.nodes[1:])
ident = "_" + edge.nodes[0].name
if "_" not in edge.label and not edge.label.startswith("ARG") \
and not edge.label.startswith("BV"):
# this is a nonterminal Edge
new_edge = NonterminalLabel(edge.label)
if not new_edge.index:
new_edge.index = "_%i" % nt_id_count
nt_id_count = nt_id_count + 1
else:
new_edge = edge.label
hgraph._add_triple(ident, new_edge, hyperchild)
return hgraph
def get_line_graph(graph):
lgraph = Hgraph()
edges_for_node = defaultdict(list)
for p, r, ch in graph.triples():
edges_for_node[p].append(str((p, r, ch)))
for c in ch:
edges_for_node[c].append(str((p, r, ch)))
for r in edges_for_node:
for p, c in itertools.combinations(edges_for_node[r], 2):
lgraph._add_triple(p, r, (c, ), warn=False)
lgraph._add_triple(c, r, (p, ), warn=False)
lgraph.roots = lgraph.find_roots()
return lgraph
def merge_tree_symbols(self, tree, amr, next_id):
"""
Binarizes a tree-graph pair according to the binariziation dictated by the
tree. WILL FAIL OFTEN IF TREE IS NOT BINARIZED.
"""
rules = []
while True:
if not isinstance(tree, Tree):
assert len(amr.triples()) == 1
return tree, amr, rules, next_id
# a collapsible subtree consists of
# 1. many terminals
# 2. one nonterminal and many terminals
# 3. two nonterminals
collapsible_subtrees = []
for st in tree.subtrees():
terminals = [t for t in st.leaves() if t[0] == '#']
if len(terminals) == 1:
collapsible_subtrees.append(st)
elif len(terminals) == 2 and len(st.leaves()) == 2:
collapsible_subtrees.append(st)
# if there are no subtrees to collapse, this rule isn't binarizable
if len(collapsible_subtrees) == 0:
raise BinarizationException
rule_tree = max(collapsible_subtrees, key=lambda x: x.height())
terminals = [t for t in rule_tree.leaves() if t[0] == '#']
rule_edge_l = [t for t in amr.triples() if str(t[1]) in terminals]
rule_amr = Hgraph.from_triples(rule_edge_l)
# if the induced graph is disconnected, this rule isn't binarizable
if len(rule_amr.roots) != 1:
raise BinarizationException
new_rule, tree, amr, next_id = self.make_rule(tree, amr, rule_tree,
rule_amr, next_id)
rules.append(new_rule)
return tree, amr, rules, next_id
def collapse_string_terminals(self, string, amr, next_id):
"""
Creates new rules by merging terminal tokens with their closest nonterminal.
All terminals attach to the left (except for terminals left of the first
nonterminal, which attach right).
"""
nonterminals = list(reversed([t for t in string if t[0] == '#']))
rules = []
# attach first terminals to the right
slice_from = 0
while nonterminals:
nt = nonterminals.pop()
if nonterminals:
slice_to = string.index(nonterminals[-1])
else:
slice_to = len(string)
if slice_to - slice_from == 1:
# there are no terminals to attach here, so skip ahead
slice_from = slice_to
continue
rule_string = string[slice_from:slice_to]
nt_edge_l = [e for e in amr.triples(nodelabels = self.nodelabels) if str(e[1]) == nt]
assert len(nt_edge_l) == 1
rule_amr = Hgraph.from_triples(nt_edge_l)
# hallucinate a tree with acceptable structure for make_rule
fictitious_tree = self.make_fictitious_tree(string, rule_string)
new_rule, tree, amr, next_id = self.make_rule(fictitious_tree, amr,
Tree('X', rule_string), rule_amr, next_id)
string = tree.leaves()
rules.append(new_rule)
slice_from = slice_from + 1
return string, amr, rules, next_id
def main():
graphs = set([line.strip().split('\t')[0] for line in file(sys.argv[1])])
for i, graph in enumerate(graphs):
g = Hgraph.from_string(graph)
g.render_to_file("{0}_{1}.jpg".format(sys.argv[2], i))
def tree_decomposition_edge(graph_edge, visited, amr, nodelabels=False):
visited.add(graph_edge)
tree_node = TreeNode()
if nodelabels:
head = graph_edge[0][0]
if graph_edge[2]:
nodes, labels = zip(*graph_edge[2])
else:
nodes = ()
else:
head = graph_edge[0]
nodes = graph_edge[2]
tree_node.graph_nodes.add(head)
tree_node.graph_nodes |= set(nodes)
tree_node.graph_edge = graph_edge
tree_node.first_child = tree_decomposition_node(nodes,
visited,
amr,
nodelabels=nodelabels)
return tree_node
if __name__ == "__main__":
from common.hgraph.hgraph import Hgraph
graph = Hgraph.from_string("(n :P$1 :arg0 (a.n :E$2) :arg1 (n :S$3 a.))")
td = tree_decomposition(graph)
subtrees.append(tree_node)
return subtrees[0]
def tree_decomposition_edge(graph_edge, visited, amr, nodelabels = False):
visited.add(graph_edge)
tree_node = TreeNode()
if nodelabels:
head = graph_edge[0][0]
if graph_edge[2]:
nodes, labels = zip(*graph_edge[2])
else:
nodes = ()
else:
head = graph_edge[0]
nodes = graph_edge[2]
tree_node.graph_nodes.add(head)
tree_node.graph_nodes |= set(nodes)
tree_node.graph_edge = graph_edge
tree_node.first_child = tree_decomposition_node(nodes, visited, amr, nodelabels = nodelabels)
return tree_node
if __name__ == "__main__":
from common.hgraph.hgraph import Hgraph
graph = Hgraph.from_string("(n :P$1 :arg0 (a.n :E$2) :arg1 (n :S$3 a.))")
td = tree_decomposition(graph)
def get_graph(self, graph):
trips = graph.triples()
return Hgraph.from_triples(
[trips[i] for i in range(len(trips)) if self.edges[i] == 1], {},
warn=False)
def convert_chart(partition, external_nodes, nt, first=False):
nt = NonterminalLabel(nt.label) # Get rid of the index
if partition in seen:
node = seen[partition]
result.use_counts[node] += 1
return node
leaves = chart.tree.leaves()
edges_in_partition = [
graph_edge_list[i] for i in range(len(partition.edges))
if partition.edges[i] == 1
]
if not partition in chart: # leaf
graph = Hgraph.from_triples(edges_in_partition, {}, warn=False)
graph.roots = graph.find_roots()
graph.roots.sort(lambda x, y: node_order[x] - node_order[y])
graph.external_nodes = external_nodes
str_rhs = [
leaves[i]
for i in range(partition.str_start, partition.str_end + 1)
]
rule = Rule(0, nt.label, graph, tuple(str_rhs), 1)
rule_id = self.add_rule(rule)
fragment = fragment_counter[0]
result[fragment] = [(rule_id, [])]
result.use_counts[fragment] += 1
seen[partition] = fragment
fragment_counter[0] += 1
return fragment
poss = []
count = 0
for possibility in chart[partition]:
count += 1
partition_graph = Hgraph.from_triples(
edges_in_partition, {},
warn=False) # This is the parent graph
partition_graph.roots = partition_graph.find_roots()
partition_graph.roots.sort(
lambda x, y: node_order[x] - node_order[y])
partition_graph.external_nodes = external_nodes
children = []
#print partition_graph.to_amr_string()
spans_to_nt = {}
old_pgraph = partition_graph
index = 1
for subpartition in possibility: #These are the different sub-constituents
edges_in_subpartition = [
graph_edge_list[i]
for i in range(len(subpartition.edges))
if subpartition.edges[i] == 1
]
if edges_in_subpartition: # Some constituents do not have any edges aligned to them
sub_graph = Hgraph.from_triples(edges_in_subpartition,
{},
warn=False)
sub_graph.roots = sub_graph.find_roots()
sub_graph.roots.sort(
lambda x, y: node_order[x] - node_order[y])
external_node_list = partition_graph.find_external_nodes2(
sub_graph)
external_node_list.sort(
lambda x, y: node_order[x] - node_order[y])
sub_external_nodes = dict([
(k, v) for v, k in enumerate(external_node_list)
])
sub_graph.external_nodes = sub_external_nodes
sub_nt = NonterminalLabel(
"%s%i" %
(subpartition.phrase, len(sub_external_nodes)),
index)
children.append(
convert_chart(subpartition, sub_external_nodes,
sub_nt)) # Recursive call
old_pgraph = partition_graph
partition_graph = partition_graph.collapse_fragment2(
sub_graph,
sub_nt,
external=external_node_list,
warn=False)
spans_to_nt[subpartition.str_start] = (
sub_nt, subpartition.str_end)
else:
sub_nt = NonterminalLabel(subpartition.phrase, index)
#assert partition_graph.is_connected()
index += 1
partition_graph.roots = partition_graph.find_roots()
partition_graph.roots.sort(
lambda x, y: node_order[x] - node_order[y])
# Assemble String rule
str_rhs = []
i = partition.str_start
while i <= partition.str_end:
if i in spans_to_nt:
new_nt, i = spans_to_nt[i]
str_rhs.append(new_nt)
else:
str_rhs.append(leaves[i])
i = i + 1
rule = Rule(0, nt.label, partition_graph, tuple(str_rhs), 1)
rule_id = self.add_rule(rule)
poss.append((rule_id, children))
fragment = fragment_counter[0]
result[fragment] = poss
result.use_counts[fragment] += 1
seen[partition] = fragment
fragment_counter[0] += 1
return fragment
def compute_chart(
tree,
graph,
prefix=""
): # Recursively compute the chart. Graph is the sub-graph we're considering, tree is the tree of spans.
count[0] += 1
triples = set(graph.triples())
edge_vector = tuple(
[1 if x in triples else 0 for x in graph_edge_list])
leaves = tree.leaves()
#if not isinstance(tree,fancy_tree.FancyTree):
# triples = set(graph.triples())
# edge_vector= tuple(1 for x in graph_edge_list if x in triples else 0)
# return Partition(tree.node, leaves[0], leaves[-1], edge_vector)
#else:
if len(tree) == 1 and not isinstance(tree[0],
fancy_tree.FancyTree):
return Partition(tree.node, leaves[0], leaves[-1], edge_vector)
# First get the set of aligned edges for this constituent and it's children
aligned_edges_for_span = set([
edge for token in tree.leaves()
for edge in rev_alignments[token]
])
partition_object = Partition(tree.node, leaves[0], leaves[-1],
edge_vector)
if partition_object not in chart:
try:
possibilities = []
child_edgesets = []
# Compute edge set for each child
for t in tree:
edgeset = []
for l in t.leaves():
edgeset.extend(rev_alignments[l])
child_edgesets.append(edgeset)
# For each possible partitioning
for cparts in get_binarized_partitions(
graph, child_edgesets):
child_forests = []
for i in range(len(tree)):
childgraph = Hgraph.from_triples(cparts[i], {},
warn=False)
sub_forest = compute_chart(tree[i],
childgraph,
prefix=prefix + " ")
if len(chart) > MAX_CHART_SIZE:
raise ChartTooBigException, "Chart size exceeded 5000 entries. dropping this sentence."
child_forests.append(sub_forest)
possibilities.append(child_forests)
chart[partition_object] = possibilities
except IncompatibleAlignmentException:
chart.inconsistent_alignment = (tree.node, leaves[0],
leaves[-1])
return partition_object
return partition_object
def load_from_file(cls, in_file, rule_class = VoRule, reverse = False, nodelabels = False, logprob = False):
"""
Loads a SHRG grammar from the given file.
See documentation for format details.
rule_class specifies the type of rule to use. VoRule is a subclass using an arbitrary graph
visit order (also used for strings). TdRule computes a tree decomposition on the first RHS
when initialized.
"""
output = Grammar(nodelabels = nodelabels, logprob = logprob)
rule_count = 1
line_count = 0
is_synchronous = False
rhs1_type = None
rhs2_type = None
buf = StringIO.StringIO()
for line in in_file:
line_count += 1
l = line.strip()
if l:
if "#" in l:
content, comment = l.split("#",1)
else:
content = l
buf.write(content.strip())
if ";" in content:
rulestring = buf.getvalue()
try:
content, weights = rulestring.split(";",1)
weight = 0.0 if not weights else (float(weights) if logprob else math.log(float(weights)))
except:
raise GrammarError, \
"Line %i, Rule %i: Error near end of line." % (line_count, rule_count)
try:
lhs, rhsstring = content.split("->")
except:
raise GrammarError, \
"Line %i, Rule %i: Invalid rule format." % (line_count, rule_count)
lhs = lhs.strip()
if rule_count == 1:
output.start_symbol = lhs
if "|" in rhsstring:
if not is_synchronous and rule_count > 1:
raise GrammarError,\
"Line %i, Rule %i: All or none of the rules need to have two RHSs." % (line_count, rule_count)
is_synchronous = True
try:
rhs1,rhs2 = rhsstring.split("|")
except:
raise GrammarError,"Only up to two RHSs are allowed in grammar file."
else:
if is_synchronous and rule_count > 0:
raise ParserError,\
"Line %i, Rule %i: All or none of the rules need to have two RHSs." % (line_count, rule_count)
is_synchronous = False
rhs1 = rhsstring
rhs2 = None
try: # If the first graph in the file cannot be parsed, assume it's a string
r1 = Hgraph.from_string(rhs1)
r1_nts = set([(ntlabel.label, ntlabel.index) for h, ntlabel, t in r1.nonterminal_edges()])
if not rhs1_type:
rhs1_type = GRAPH_FORMAT
except (ParserError, IndexError), e:
if rhs1_type == GRAPH_FORMAT:
raise ParserError,\
"Line %i, Rule %i: Could not parse graph description: %s" % (line_count, rule_count, e.message)
else:
r1 = parse_string(rhs1)
nts = [t for t in r1 if isinstance(t, NonterminalLabel)]
r1_nts = set([(ntlabel.label, ntlabel.index) for ntlabel in nts])
rhs1_type = STRING_FORMAT
if is_synchronous:
try: # If the first graph in the file cannot be parsed, assume it's a string
if rhs2_type:
assert rhs2_type == GRAPH_FORMAT
r2 = Hgraph.from_string(rhs2)
r2_nts = set([(ntlabel.label, ntlabel.index) for h, ntlabel, t in r2.nonterminal_edges()])
if not rhs2_type:
rhs2_type = GRAPH_FORMAT
except (ParserError, IndexError, AssertionError), e:
if rhs2_type == GRAPH_FORMAT:
raise ParserError,\
"Line %i, Rule %i: Could not parse graph description: %s" % (line_count, rule_count, e.message)
else:
r2 = parse_string(rhs2)
nts = [t for t in r2 if isinstance(t, NonterminalLabel)]
r2_nts = set([(ntlabel.label, ntlabel.index) for ntlabel in nts])
rhs2_type = STRING_FORMAT
# Verify that nonterminals match up
if not r1_nts == r2_nts:
raise GrammarError, \
"Line %i, Rule %i: Nonterminals do not match between RHSs: %s %s" % (line_count, rule_count, str(r1_nts), str(r2_nts))
else:
r2 = None
try:
if is_synchronous and reverse:
output[rule_count] = rule_class(rule_count, lhs, weight, r2, r1, nodelabels = nodelabels, logprob = logprob)
else:
output[rule_count] = rule_class(rule_count, lhs, weight, r1, r2, nodelabels = nodelabels, logprob = logprob)
except Exception, e:
raise GrammarError, \
"Line %i, Rule %i: Could not initialize rule. %s" % (line_count, rule_count, e.message)
buf = StringIO.StringIO()
rule_count += 1
def convert_chart(partition, external_nodes, nt, first=False):
nt = NonterminalLabel(nt.label) # Get rid of the index
if partition in seen:
node = seen[partition]
result.use_counts[node] += 1
return node
leaves = chart.tree.leaves()
edges_in_partition = [graph_edge_list[i] for i in range(len(partition.edges)) if partition.edges[i] == 1]
if not partition in chart: # leaf
graph = Hgraph.from_triples(edges_in_partition, {}, warn=False)
graph.roots = graph.find_roots()
graph.roots.sort(lambda x, y: node_order[x] - node_order[y])
graph.external_nodes = external_nodes
str_rhs = [leaves[i] for i in range(partition.str_start, partition.str_end + 1)]
rule = Rule(0, nt.label, graph, tuple(str_rhs), 1)
rule_id = self.add_rule(rule)
fragment = fragment_counter[0]
result[fragment] = [(rule_id, [])]
result.use_counts[fragment] += 1
seen[partition] = fragment
fragment_counter[0] += 1
return fragment
poss = []
count = 0
for possibility in chart[partition]:
count += 1
partition_graph = Hgraph.from_triples(edges_in_partition, {}, warn=False) # This is the parent graph
partition_graph.roots = partition_graph.find_roots()
partition_graph.roots.sort(lambda x, y: node_order[x] - node_order[y])
partition_graph.external_nodes = external_nodes
children = []
# print partition_graph.to_amr_string()
spans_to_nt = {}
old_pgraph = partition_graph
index = 1
for subpartition in possibility: # These are the different sub-constituents
edges_in_subpartition = [
graph_edge_list[i] for i in range(len(subpartition.edges)) if subpartition.edges[i] == 1
]
if edges_in_subpartition: # Some constituents do not have any edges aligned to them
sub_graph = Hgraph.from_triples(edges_in_subpartition, {}, warn=False)
sub_graph.roots = sub_graph.find_roots()
sub_graph.roots.sort(lambda x, y: node_order[x] - node_order[y])
external_node_list = partition_graph.find_external_nodes2(sub_graph)
external_node_list.sort(lambda x, y: node_order[x] - node_order[y])
sub_external_nodes = dict([(k, v) for v, k in enumerate(external_node_list)])
sub_graph.external_nodes = sub_external_nodes
sub_nt = NonterminalLabel("%s%i" % (subpartition.phrase, len(sub_external_nodes)), index)
children.append(convert_chart(subpartition, sub_external_nodes, sub_nt)) # Recursive call
old_pgraph = partition_graph
partition_graph = partition_graph.collapse_fragment2(
sub_graph, sub_nt, external=external_node_list, warn=False
)
spans_to_nt[subpartition.str_start] = (sub_nt, subpartition.str_end)
else:
sub_nt = NonterminalLabel(subpartition.phrase, index)
# assert partition_graph.is_connected()
index += 1
partition_graph.roots = partition_graph.find_roots()
partition_graph.roots.sort(lambda x, y: node_order[x] - node_order[y])
# Assemble String rule
str_rhs = []
i = partition.str_start
while i <= partition.str_end:
if i in spans_to_nt:
new_nt, i = spans_to_nt[i]
str_rhs.append(new_nt)
else:
str_rhs.append(leaves[i])
i = i + 1
rule = Rule(0, nt.label, partition_graph, tuple(str_rhs), 1)
rule_id = self.add_rule(rule)
poss.append((rule_id, children))
fragment = fragment_counter[0]
result[fragment] = poss
result.use_counts[fragment] += 1
seen[partition] = fragment
fragment_counter[0] += 1
return fragment
def get_graph(self, graph):
trips = graph.triples()
return Hgraph.from_triples([trips[i] for i in range(len(trips)) if self.edges[i] == 1], {}, warn=False)
log.info("Loaded %s%s grammar with %i rules."\
% (grammar.rhs1_type, "-to-%s" % grammar.rhs2_type if grammar.rhs2_type else '', len(grammar)))
# EM training
if config.train:
iterations = config.train
if not config.input_file:
log.err("Please specify corpus file for EM training.")
sys.exit(1)
if config.bitext:
corpus = list(read_pairs(fileinput.input(config.input_file)))
grammar.em(corpus, iterations, parser_class, "synchronous")
else:
corpus = [Hgraph.from_string(x) for x in fileinput.input(config.input_file)]
grammar.em(corpus, iterations, parser_class, "forward")
for rid in sorted(grammar.keys()):
output_file.write(str(grammar[rid]))
output_file.write("\n")
sys.exit(0)
# Normalization
if config.normalize:
if config.bitext or grammar.rhs2_type is None or config.g or (config.k and not config.input_files):
grammar.normalize_lhs()
else:
grammar.normalize_rhs2()
for rid in sorted(grammar.keys()):
output_file.write(str(grammar[rid]))
output_file.write("\n")
log.info("Loaded %s%s grammar with %i rules."\
% (grammar.rhs1_type, "-to-%s" % grammar.rhs2_type if grammar.rhs2_type else '', len(grammar)))
# EM training
if config.train:
iterations = config.train
if not config.input_file:
log.err("Please specify corpus file for EM training.")
sys.exit(1)
if config.bitext:
corpus = list(read_pairs(fileinput.input(config.input_file)))
grammar.em(corpus, iterations, parser_class, "synchronous")
else:
corpus = [
Hgraph.from_string(x)
for x in fileinput.input(config.input_file)
]
grammar.em(corpus, iterations, parser_class, "forward")
for rid in sorted(grammar.keys()):
output_file.write(str(grammar[rid]))
output_file.write("\n")
sys.exit(0)
# Normalization
if config.normalize:
if config.bitext or grammar.rhs2_type is None or config.g or (
config.k and not config.input_files):
grammar.normalize_lhs()
else:
grammar.normalize_rhs2()
def load_from_file(cls,
in_file,
rule_class=VoRule,
reverse=False,
nodelabels=False,
logprob=False):
"""
Loads a SHRG grammar from the given file.
See documentation for format details.
rule_class specifies the type of rule to use. VoRule is a subclass using an arbitrary graph
visit order (also used for strings). TdRule computes a tree decomposition on the first RHS
when initialized.
"""
output = Grammar(nodelabels=nodelabels, logprob=logprob)
rule_count = 1
line_count = 0
is_synchronous = False
rhs1_type = None
rhs2_type = None
buf = StringIO.StringIO()
for line in in_file:
line_count += 1
l = line.strip()
if l:
if "#" in l:
content, comment = l.split("#", 1)
else:
content = l
buf.write(content.strip())
if ";" in content:
rulestring = buf.getvalue()
try:
content, weights = rulestring.split(";", 1)
weight = 0.0 if not weights else (float(
weights) if logprob else math.log(float(weights)))
except:
raise GrammarError, \
"Line %i, Rule %i: Error near end of line." % (line_count, rule_count)
try:
lhs, rhsstring = content.split("->")
except:
raise GrammarError, \
"Line %i, Rule %i: Invalid rule format." % (line_count, rule_count)
lhs = lhs.strip()
if rule_count == 1:
output.start_symbol = lhs
if "|" in rhsstring:
if not is_synchronous and rule_count > 1:
raise GrammarError,\
"Line %i, Rule %i: All or none of the rules need to have two RHSs." % (line_count, rule_count)
is_synchronous = True
try:
rhs1, rhs2 = rhsstring.split("|")
except:
raise GrammarError, "Only up to two RHSs are allowed in grammar file."
else:
if is_synchronous and rule_count > 0:
raise ParserError,\
"Line %i, Rule %i: All or none of the rules need to have two RHSs." % (line_count, rule_count)
is_synchronous = False
rhs1 = rhsstring
rhs2 = None
try: # If the first graph in the file cannot be parsed, assume it's a string
r1 = Hgraph.from_string(rhs1)
r1_nts = set([
(ntlabel.label, ntlabel.index)
for h, ntlabel, t in r1.nonterminal_edges()
])
if not rhs1_type:
rhs1_type = GRAPH_FORMAT
except (ParserError, IndexError), e:
if rhs1_type == GRAPH_FORMAT:
raise ParserError,\
"Line %i, Rule %i: Could not parse graph description: %s" % (line_count, rule_count, e.message)
else:
r1 = parse_string(rhs1)
nts = [
t for t in r1
if isinstance(t, NonterminalLabel)
]
r1_nts = set([(ntlabel.label, ntlabel.index)
for ntlabel in nts])
rhs1_type = STRING_FORMAT
if is_synchronous:
try: # If the first graph in the file cannot be parsed, assume it's a string
if rhs2_type:
assert rhs2_type == GRAPH_FORMAT
r2 = Hgraph.from_string(rhs2)
r2_nts = set([
(ntlabel.label, ntlabel.index)
for h, ntlabel, t in r2.nonterminal_edges()
])
if not rhs2_type:
rhs2_type = GRAPH_FORMAT
except (ParserError, IndexError, AssertionError), e:
if rhs2_type == GRAPH_FORMAT:
raise ParserError,\
"Line %i, Rule %i: Could not parse graph description: %s" % (line_count, rule_count, e.message)
else:
r2 = parse_string(rhs2)
nts = [
t for t in r2
if isinstance(t, NonterminalLabel)
]
r2_nts = set([(ntlabel.label, ntlabel.index)
for ntlabel in nts])
rhs2_type = STRING_FORMAT
# Verify that nonterminals match up
if not r1_nts == r2_nts:
raise GrammarError, \
"Line %i, Rule %i: Nonterminals do not match between RHSs: %s %s" % (line_count, rule_count, str(r1_nts), str(r2_nts))
else:
r2 = None
try:
if is_synchronous and reverse:
output[rule_count] = rule_class(
rule_count,
lhs,
weight,
r2,
r1,
nodelabels=nodelabels,
logprob=logprob)
else:
output[rule_count] = rule_class(
rule_count,
lhs,
weight,
r1,
r2,
nodelabels=nodelabels,
logprob=logprob)
except Exception, e:
raise GrammarError, \
"Line %i, Rule %i: Could not initialize rule. %s" % (line_count, rule_count, e.message)
buf = StringIO.StringIO()
rule_count += 1
