def make_temp_condarc(value=None):
try:
tempfile = NamedTemporaryFile(suffix='.yml', delete=False)
tempfile.close()
temp_path = tempfile.name
if value:
with open(temp_path, 'w') as f:
f.write(value)
reset_context([temp_path])
yield temp_path
finally:
backoff_unlink(temp_path)
def make_temp_condarc(value=None):
try:
tempfile = NamedTemporaryFile(suffix='.yml', delete=False)
tempfile.close()
temp_path = tempfile.name
if value:
with open(temp_path, 'w') as f:
f.write(value)
reset_context([temp_path])
yield temp_path
finally:
backoff_unlink(temp_path)
def clone_env(prefix1, prefix2, verbose=True, quiet=False, index_args=None):
"""
clone existing prefix1 into new prefix2
"""
untracked_files = untracked(prefix1)
# Discard conda and any package that depends on it
drecs = linked_data(prefix1)
filter = {}
found = True
while found:
found = False
for dist, info in iteritems(drecs):
name = info['name']
if name in filter:
continue
if name == 'conda':
filter['conda'] = dist
found = True
break
for dep in info.get('depends', []):
if MatchSpec(dep).name in filter:
filter[name] = dist
found = True
if filter:
if not quiet:
print(
'The following packages cannot be cloned out of the root environment:'
)
for pkg in itervalues(filter):
print(' - ' + pkg)
drecs = {
dist: info
for dist, info in iteritems(drecs)
if info['name'] not in filter
}
# Resolve URLs for packages that do not have URLs
r = None
index = {}
unknowns = [dist for dist, info in iteritems(drecs) if not info.get('url')]
notfound = []
if unknowns:
index_args = index_args or {}
index = get_index(**index_args)
r = Resolve(index, sort=True)
for dist in unknowns:
name = name_dist(dist)
fn = dist2filename(dist)
fkeys = [d for d in r.index.keys() if r.index[d]['fn'] == fn]
if fkeys:
del drecs[dist]
dist = sorted(fkeys, key=r.version_key, reverse=True)[0]
drecs[dist] = r.index[dist]
else:
notfound.append(fn)
if notfound:
what = "Package%s " % ('' if len(notfound) == 1 else 's')
notfound = '\n'.join(' - ' + fn for fn in notfound)
msg = '%s missing in current %s channels:%s' % (what, context.subdir,
notfound)
raise CondaRuntimeError(msg)
# Assemble the URL and channel list
urls = {}
for dist, info in iteritems(drecs):
fkey = dist + '.tar.bz2'
if fkey not in index:
info['not_fetched'] = True
index[fkey] = info
r = None
urls[dist] = info['url']
if r is None:
r = Resolve(index)
dists = r.dependency_sort(urls.keys())
urls = [urls[d] for d in dists]
if verbose:
print('Packages: %d' % len(dists))
print('Files: %d' % len(untracked_files))
for f in untracked_files:
src = join(prefix1, f)
dst = join(prefix2, f)
dst_dir = dirname(dst)
if islink(dst_dir) or isfile(dst_dir):
backoff_unlink(dst_dir)
if not isdir(dst_dir):
os.makedirs(dst_dir)
if islink(src):
os.symlink(os.readlink(src), dst)
continue
try:
with open(src, 'rb') as fi:
data = fi.read()
except IOError:
continue
try:
s = data.decode('utf-8')
s = s.replace(prefix1, prefix2)
data = s.encode('utf-8')
except UnicodeDecodeError: # data is binary
pass
with open(dst, 'wb') as fo:
fo.write(data)
shutil.copystat(src, dst)
actions = explicit(urls,
prefix2,
verbose=not quiet,
index=index,
force_extract=False,
index_args=index_args)
return actions, untracked_files
def clone_env(prefix1, prefix2, verbose=True, quiet=False, index_args=None):
"""
clone existing prefix1 into new prefix2
"""
untracked_files = untracked(prefix1)
# Discard conda and any package that depends on it
drecs = linked_data(prefix1)
filter = {}
found = True
while found:
found = False
for dist, info in iteritems(drecs):
name = info['name']
if name in filter:
continue
if name == 'conda':
filter['conda'] = dist
found = True
break
for dep in info.get('depends', []):
if MatchSpec(dep).name in filter:
filter[name] = dist
found = True
if filter:
if not quiet:
print('The following packages cannot be cloned out of the root environment:')
for pkg in itervalues(filter):
print(' - ' + pkg)
drecs = {dist: info for dist, info in iteritems(drecs) if info['name'] not in filter}
# Resolve URLs for packages that do not have URLs
r = None
index = {}
unknowns = [dist for dist, info in iteritems(drecs) if not info.get('url')]
notfound = []
if unknowns:
index_args = index_args or {}
index = get_index(**index_args)
r = Resolve(index, sort=True)
for dist in unknowns:
name = name_dist(dist)
fn = dist2filename(dist)
fkeys = [d for d in r.index.keys() if r.index[d]['fn'] == fn]
if fkeys:
del drecs[dist]
dist = sorted(fkeys, key=r.version_key, reverse=True)[0]
drecs[dist] = r.index[dist]
else:
notfound.append(fn)
if notfound:
what = "Package%s " % ('' if len(notfound) == 1 else 's')
notfound = '\n'.join(' - ' + fn for fn in notfound)
msg = '%s missing in current %s channels:%s' % (what, context.subdir, notfound)
raise CondaRuntimeError(msg)
# Assemble the URL and channel list
urls = {}
for dist, info in iteritems(drecs):
fkey = dist + '.tar.bz2'
if fkey not in index:
info['not_fetched'] = True
index[fkey] = info
r = None
urls[dist] = info['url']
if r is None:
r = Resolve(index)
dists = r.dependency_sort(urls.keys())
urls = [urls[d] for d in dists]
if verbose:
print('Packages: %d' % len(dists))
print('Files: %d' % len(untracked_files))
for f in untracked_files:
src = join(prefix1, f)
dst = join(prefix2, f)
dst_dir = dirname(dst)
if islink(dst_dir) or isfile(dst_dir):
backoff_unlink(dst_dir)
if not isdir(dst_dir):
os.makedirs(dst_dir)
if islink(src):
os.symlink(os.readlink(src), dst)
continue
try:
with open(src, 'rb') as fi:
data = fi.read()
except IOError:
continue
try:
s = data.decode('utf-8')
s = s.replace(prefix1, prefix2)
data = s.encode('utf-8')
except UnicodeDecodeError: # data is binary
pass
with open(dst, 'wb') as fo:
fo.write(data)
shutil.copystat(src, dst)
actions = explicit(urls, prefix2, verbose=not quiet, index=index,
force_extract=False, index_args=index_args)
return actions, untracked_files
def close(self):
if self._temp_file:
backoff_unlink(self._temp_file)
