def tri_combined(idx, pclen, depth, max_depth):
"""TF function, input: idx, pclen, depth, max_depth as batch (1D Tensor)
Output: weight tensor (3D Tensor), first dim is batch
"""
Wconvt = param.get('Wconvt')
Wconvl = param.get('Wconvl')
Wconvr = param.get('Wconvr')
dim = tf.unstack(tf.shape(Wconvt))[0]
batch_shape = tf.shape(idx)
tmp = (idx - 1) / (pclen - 1)
# when pclen == 1, replace nan items with 0.5
tmp = tf.where(tf.is_nan(tmp), tf.ones_like(tmp) * 0.5, tmp)
t = (max_depth - depth) / max_depth
r = (1 - t) * tmp
l = (1 - t) * (1 - r)
lb = tf.transpose(tf.transpose(tf.eye(dim, batch_shape=batch_shape)) * l)
rb = tf.transpose(tf.transpose(tf.eye(dim, batch_shape=batch_shape)) * r)
tb = tf.transpose(tf.transpose(tf.eye(dim, batch_shape=batch_shape)) * t)
lb = tf.reshape(lb, [-1, dim])
rb = tf.reshape(rb, [-1, dim])
tb = tf.reshape(tb, [-1, dim])
tmp = tf.matmul(lb, Wconvl) + tf.matmul(rb, Wconvr) + tf.matmul(tb, Wconvt)
tmp = tf.reshape(tmp, [-1, hyper.word_dim, hyper.conv_dim])
return tmp
def linear_combine(clen, pclen, idx):
Wl = param.get('Wl')
Wr = param.get('Wr')
dim = tf.unstack(tf.shape(Wl))[0]
batch_shape = tf.shape(clen)
f = (clen / pclen)
l = (pclen - idx - 1) / (pclen - 1)
r = (idx) / (pclen - 1)
# when pclen == 1, replace nan items with 0.5
l = tf.where(tf.is_nan(l), tf.ones_like(l) * 0.5, l)
r = tf.where(tf.is_nan(r), tf.ones_like(r) * 0.5, r)
lb = tf.transpose(tf.transpose(tf.eye(dim, batch_shape=batch_shape)) * l)
rb = tf.transpose(tf.transpose(tf.eye(dim, batch_shape=batch_shape)) * r)
fb = tf.transpose(tf.transpose(tf.eye(dim, batch_shape=batch_shape)) * f)
lb = tf.reshape(lb, [-1, hyper.word_dim])
rb = tf.reshape(rb, [-1, hyper.word_dim])
tmp = tf.matmul(lb, Wl) + tf.matmul(rb, Wr)
tmp = tf.reshape(tmp, [-1, hyper.word_dim, hyper.word_dim])
return tf.matmul(fb, tmp)
def composed_embed_blk():
leaf_case = direct_embed_blk()
nonleaf_case = td.Composition(name='composed_embed_nonleaf')
with nonleaf_case.scope():
children = td.GetItem('children').reads(nonleaf_case.input)
clen = td.Scalar().reads(td.GetItem('clen').reads(nonleaf_case.input))
cclens = td.Map(td.GetItem('clen') >> td.Scalar()).reads(children)
fchildren = td.Map(direct_embed_blk()).reads(children)
initial_state = td.Composition()
with initial_state.scope():
initial_state.output.reads(
td.FromTensor(tf.zeros(hyper.word_dim)),
td.FromTensor(tf.zeros([])),
)
summed = td.Zip().reads(fchildren, cclens, td.Broadcast().reads(clen))
summed = td.Fold(continous_weighted_add_blk(),
initial_state).reads(summed)[0]
added = td.Function(tf.add, name='add_bias').reads(
summed, td.FromTensor(param.get('B')))
normed = clip_by_norm_blk().reads(added)
act_fn = tf.nn.relu if hyper.use_relu else tf.nn.tanh
relu = td.Function(act_fn).reads(normed)
nonleaf_case.output.reads(relu)
return td.OneOf(lambda node: node['clen'] == 0, {
True: leaf_case,
False: nonleaf_case
})
def feature_detector_blk(max_depth=2):
"""Input: node dict
Output: TensorType([hyper.conv_dim, ])
Single patch of the conv. Depth is max_depth
"""
blk = td.Composition()
with blk.scope():
nodes_in_patch = collect_node_for_conv_patch_blk(
max_depth=max_depth).reads(blk.input)
# map from python object to tensors
mapped = td.Map(
td.Record((coding_blk(), td.Scalar(), td.Scalar(), td.Scalar(),
td.Scalar()))).reads(nodes_in_patch)
# mapped = [(feature, idx, depth, max_depth), (...)]
# compute weighted feature for each elem
weighted = td.Map(weighted_feature_blk()).reads(mapped)
# weighted = [fea, fea, fea, ...]
# add together
added = td.Reduce(td.Function(tf.add)).reads(weighted)
# added = TensorType([hyper.conv_dim, ])
# add bias
biased = td.Function(tf.add).reads(added,
td.FromTensor(param.get('Bconv')))
# biased = TensorType([hyper.conv_dim, ])
# tanh
tanh = td.Function(tf.nn.tanh).reads(biased)
# tanh = TensorType([hyper.conv_dim, ])
blk.output.reads(tanh)
return blk
def coding_blk():
"""Input: node dict
Output: TensorType([1, hyper.word_dim])
"""
Wcomb1 = param.get('Wcomb1')
Wcomb2 = param.get('Wcomb2')
blk = td.Composition()
with blk.scope():
direct = embedding.direct_embed_blk().reads(blk.input)
composed = embedding.composed_embed_blk().reads(blk.input)
Wcomb1 = td.FromTensor(param.get('Wcomb1'))
Wcomb2 = td.FromTensor(param.get('Wcomb2'))
direct = td.Function(embedding.batch_mul).reads(direct, Wcomb1)
composed = td.Function(embedding.batch_mul).reads(composed, Wcomb2)
added = td.Function(tf.add).reads(direct, composed)
blk.output.reads(added)
return blk
def build_model():
# create model variables
param.initialize_tbcnn_weights()
# Compile the block and append fc layers
tree_pooling = dynamic_pooling_blk()
compiler = td.Compiler.create((tree_pooling, td.Scalar(dtype='int64')))
(pooled, batched_labels) = compiler.output_tensors
fc1 = tf.nn.relu(
tf.add(tf.matmul(pooled, param.get('FC1/weight')),
param.get('FC1/bias')))
fc2 = tf.nn.relu(
tf.add(tf.matmul(fc1, param.get('FC2/weight')), param.get('FC2/bias')))
# our prediction output with accuracy calc
logits = tf.nn.softmax(fc2)
correct_prediction = tf.equal(tf.argmax(logits, 1), batched_labels)
accuracy = tf.reduce_mean(tf.cast(correct_prediction, tf.float32))
batch_size_op = tf.unstack(tf.shape(batched_labels))[0]
return compiler, fc2, logits, batched_labels, accuracy, batch_size_op
def train_with_val(unscaled_logits, batched_labels, train_accuracy):
global_step = tf.Variable(0, trainable=False, name='global_step')
# calculate weight decay loss
decay_names = ['Wl', 'Wr', 'Wconvl', 'Wconvr', 'Wconvt']
decay_loss = tf.reduce_sum(
input_tensor=hyper.weight_decay *
tf.stack([tf.nn.l2_loss(param.get(n)) for n in decay_names]),
name='weights_norm')
# Calculate loss
batched_loss = tf.nn.sparse_softmax_cross_entropy_with_logits(
logits=unscaled_logits, labels=batched_labels)
loss = tf.reduce_mean(batched_loss) + decay_loss
# Exponential decay learning rate
decayed_rate = tf.train.exponential_decay(hyper.learning_rate,
global_step,
200,
0.65,
staircase=True)
opt = tf.train.AdamOptimizer(learning_rate=decayed_rate)
# Apply optimizer
train_step = opt.minimize(loss, global_step=global_step)
# Attach summaries
tf.summary.scalar('learning_rate', decayed_rate)
tf.summary.histogram('Wl', param.get('Wl'))
tf.summary.histogram('Wr', param.get('Wr'))
tf.summary.histogram('B', param.get('B'))
tf.summary.histogram('Wconvl', param.get('Wconvl'))
tf.summary.histogram('Wconvr', param.get('Wconvr'))
tf.summary.histogram('Wconvt', param.get('Wconvt'))
tf.summary.histogram('Bconv', param.get('Bconv'))
tf.summary.scalar('loss', loss)
tf.summary.scalar('train_accuracy', train_accuracy)
summary_op = tf.summary.merge_all()
return loss, global_step, train_step, summary_op
def write_embedding_metadata(writer, word2int):
metadata_path = os.path.join(hyper.train_dir, 'embedding_meta.tsv')
# dump embedding mapping
items = sorted(word2int.items(), key=operator.itemgetter(1))
with open(metadata_path, 'w') as f:
for item in items:
print(item[0], file=f)
config = projector.ProjectorConfig()
config.model_checkpoint_dir = hyper.train_dir
# the above line not work yet. TF doesn't support model_checkpoint_dir
# thus create a symlink from train_dir to log_dir
os.symlink(os.path.join(hyper.train_dir, 'checkpoint'),
os.path.join(hyper.log_dir, 'checkpoint'))
embedding = config.embeddings.add()
embedding.tensor_name = param.get('We').name
# Link this tensor to its metadata file (e.g. labels).
embedding.metadata_path = metadata_path
# Saves a configuration file that TensorBoard will read during startup.
projector.visualize_embeddings(writer, config)
def direct_embed_blk():
return (td.GetItem('name') >> td.Scalar('int32') >>
td.Function(lambda x: tf.nn.embedding_lookup(param.get('We'), x))
>> clip_by_norm_blk())
def main():
apputil.initialize(variable_scope='embedding')
# load data early so we can initialize hyper parameters accordingly
ds = data.load_dataset('../data/statements')
hyper.node_type_num = len(ds.word2int)
hyper.dump()
# create model variables
param.initialize_embedding_weights()
# Compile the block
tree_sum = td.GetItem(0) >> tree_sum_blk(l2loss_blk)
compiler = td.Compiler.create(tree_sum)
(batched_loss, ) = compiler.output_tensors
loss = tf.reduce_mean(batched_loss)
opt = tf.train.AdamOptimizer(learning_rate=hyper.learning_rate)
global_step = tf.Variable(0, trainable=False, name='global_step')
train_step = opt.minimize(loss, global_step=global_step)
# Attach summaries
tf.summary.histogram('Wl', param.get('Wl'))
tf.summary.histogram('Wr', param.get('Wr'))
tf.summary.histogram('B', param.get('B'))
tf.summary.histogram('Embedding', param.get('We'))
tf.summary.scalar('loss', loss)
summary_op = tf.summary.merge_all()
# create missing dir
if not os.path.exists(hyper.train_dir):
os.makedirs(hyper.train_dir)
# train loop
saver = tf.train.Saver()
train_set = compiler.build_loom_inputs(ds.get_split('all')[1])
with tf.Session() as sess:
sess.run(tf.global_variables_initializer())
summary_writer = tf.summary.FileWriter(hyper.log_dir, graph=sess.graph)
write_embedding_metadata(summary_writer, ds.word2int)
for epoch, shuffled in enumerate(
td.epochs(train_set, hyper.num_epochs), 1):
for step, batch in enumerate(
td.group_by_batches(shuffled, hyper.batch_size), 1):
train_feed_dict = {compiler.loom_input_tensor: batch}
start_time = default_timer()
_, loss_value, summary, gstep = sess.run(
[train_step, loss, summary_op, global_step],
train_feed_dict)
duration = default_timer() - start_time
logger.info(
'global %d epoch %d step %d loss = %.2f (%.1f samples/sec; %.3f sec/batch)',
gstep, epoch, step, loss_value,
hyper.batch_size / duration, duration)
if gstep % 10 == 0:
summary_writer.add_summary(summary, gstep)
if gstep % 10 == 0:
saver.save(sess,
os.path.join(hyper.train_dir, "model.ckpt"),
global_step=gstep)
def do_evaluation():
# load data early to get node_type_num
ds = data.load_dataset('data/statements')
hyper.node_type_num = len(ds.word2int)
(compiler, _, _, _, raw_accuracy, batch_size_op) = build_model()
# restorer for embedding matrix
embedding_path = tf.train.latest_checkpoint(hyper.embedding_dir)
if embedding_path is None:
raise ValueError('Path to embedding checkpoint is incorrect: ' +
hyper.embedding_dir)
# restorer for other variables
checkpoint_path = tf.train.latest_checkpoint(hyper.train_dir)
if checkpoint_path is None:
raise ValueError('Path to tbcnn checkpoint is incorrect: ' +
hyper.train_dir)
restored_vars = tf.get_collection_ref('restored')
restored_vars.append(param.get('We'))
restored_vars.extend(tf.get_collection(tf.GraphKeys.TRAINABLE_VARIABLES))
embeddingRestorer = tf.train.Saver({'embedding/We': param.get('We')})
restorer = tf.train.Saver(
tf.get_collection(tf.GraphKeys.TRAINABLE_VARIABLES))
# train loop
total_size, test_gen = ds.get_split('test')
test_set = compiler.build_loom_inputs(test_gen)
with tf.Session() as sess:
# Restore embedding matrix first
embeddingRestorer.restore(sess, embedding_path)
# Restore others
restorer.restore(sess, checkpoint_path)
# Initialize other variables
gvariables = [
v for v in tf.global_variables()
if v not in tf.get_collection('restored')
]
sess.run(tf.variables_initializer(gvariables))
num_epochs = 1 if not hyper.warm_up else 3
for shuffled in td.epochs(test_set, num_epochs):
logger.info('')
logger.info(
'======================= Evaluation ===================================='
)
accumulated_accuracy = 0.
start_time = default_timer()
for step, batch in enumerate(
td.group_by_batches(shuffled, hyper.batch_size), 1):
feed_dict = {compiler.loom_input_tensor: batch}
accuracy_value, actual_bsize = sess.run(
[raw_accuracy, batch_size_op], feed_dict)
accumulated_accuracy += accuracy_value * actual_bsize
logger.info(
'evaluation in progress: running accuracy = %.2f, processed = %d / %d',
accuracy_value,
(step - 1) * hyper.batch_size + actual_bsize, total_size)
duration = default_timer() - start_time
total_accuracy = accumulated_accuracy / total_size
logger.info(
'evaluation accumulated accuracy = %.2f%% (%.1f samples/sec; %.2f seconds)',
total_accuracy * 100, total_size / duration, duration)
logger.info(
'======================= Evaluation End ================================='
)
logger.info('')
def do_train():
# load data early to get node_type_num
ds = data.load_dataset('../data/statements')
hyper.node_type_num = len(ds.word2int)
hyper.dump()
(compiler, unscaled_logits, logits, batched_labels, raw_accuracy,
batch_size_op) = build_model()
(loss, global_step, train_step,
summary_op) = train_with_val(unscaled_logits, batched_labels,
raw_accuracy)
val_summary_op = tf.summary.scalar('val_accuracy', raw_accuracy)
# create missing dir
if not os.path.exists(hyper.train_dir):
os.makedirs(hyper.train_dir)
# restorer for embedding matrix
restorer = tf.train.Saver({'embedding/We': param.get('We')})
embedding_path = tf.train.latest_checkpoint(hyper.embedding_dir)
if embedding_path is None:
raise ValueError('Path to embedding checkpoint is incorrect: ' +
hyper.embedding_dir)
# train loop
saver = tf.train.Saver()
train_set = compiler.build_loom_inputs(ds.get_split('train')[1])
val_set = compiler.build_loom_inputs(ds.get_split('val')[1])
with tf.Session() as sess:
# Restore embedding matrix first
restorer.restore(sess, embedding_path)
# Initialize other variables
gvariables = tf.global_variables()
gvariables.remove(param.get('We')) # exclude We
sess.run(tf.variables_initializer(gvariables))
summary_writer = tf.summary.FileWriter(hyper.log_dir, graph=sess.graph)
val_step_counter = 0
shuffled = zip(td.epochs(train_set, hyper.num_epochs),
td.epochs(val_set, hyper.num_epochs))
for epoch, (train_shuffled, val_shuffled) in enumerate(shuffled, 1):
for step, batch in enumerate(
td.group_by_batches(train_shuffled, hyper.batch_size), 1):
train_feed_dict = {compiler.loom_input_tensor: batch}
start_time = default_timer()
(_, loss_value, summary, gstep, actual_bsize) = sess.run(
[train_step, loss, summary_op, global_step, batch_size_op],
train_feed_dict)
duration = default_timer() - start_time
logger.info(
'global %d epoch %d step %d loss = %.2f (%.1f samples/sec; %.3f sec/batch)',
gstep, epoch, step, loss_value, actual_bsize / duration,
duration)
if gstep % 10 == 0:
summary_writer.add_summary(summary, gstep)
# do a validation test
logger.info('')
logger.info(
'======================= Validation ===================================='
)
accumulated_accuracy = 0.
total_size = 0
start_time = default_timer()
for batch in td.group_by_batches(val_shuffled, hyper.batch_size):
feed_dict = {compiler.loom_input_tensor: batch}
accuracy_value, actual_bsize, val_summary = sess.run(
[raw_accuracy, batch_size_op, val_summary_op], feed_dict)
summary_writer.add_summary(val_summary, val_step_counter)
accumulated_accuracy += accuracy_value * actual_bsize
total_size += actual_bsize
val_step_counter += 1
logger.info(
'validation step, accuracy = %.2f, current batch = %d, processed = %d',
accuracy_value, actual_bsize, total_size)
duration = default_timer() - start_time
total_accuracy = accumulated_accuracy / total_size
logger.info(
'validation acc = %.2f%% (%.1f samples/sec; %.2f seconds)',
total_accuracy * 100, total_size / duration, duration)
saved_path = saver.save(sess,
os.path.join(hyper.train_dir,
"model.ckpt"),
global_step=gstep)
logger.info('validation saved path: %s', saved_path)
logger.info(
'======================= Validation End ================================='
)
logger.info('')
