def init_program(self):
# self.metasim = RunMetaSim.create_metasim_from_setting(self.setting)
if self.setting.run_mine:
self.mine = RunMINE.create_class_from_setting(self.setting)
else:
if self.setting.get("assembler_prog") is "genovo":
self.assembler = RunGenovo.create_genovo_from_setting(self.setting)
elif self.setting.get("assembler_prog") is "xgenovo":
self.assembler = RunXGenovo.create_xgenovo_from_setting(self.setting)
self.glimmer = RunGlimmer.create_glimmer_from_setting(self.setting)
# self.blast = run_BLAST.RunBlast.create_blast_from_setting(self.setting)
self.blast = RunBlast.create_blast_from_setting(self.setting)
