def _load_main_conf(self, build_all=True):
self._main = {}
if os.path.exists(self.main_conf_path) == False:
shutil.copy(os.path.join(constants.packagedir, 'cravat.yml'), self.main_conf_path)
self._main = au.load_yml_conf(self.main_conf_path)
if build_all:
self._build_all()
def _load_module_conf(self, module_name, build_all=True):
module_info = au.get_local_module_info(module_name)
if module_info is not None:
self._modules[module_name] = au.load_yml_conf(
module_info.conf_path)
if build_all:
self._build_all()
def _load_job_conf(self, build_all=True):
self._job = {}
if self.job_conf_path:
if os.path.exists(self.job_conf_path):
self._job = au.load_yml_conf(self.job_conf_path)
else:
print('Job conf file', self.job_conf_path, 'does not exist.')
exit()
if build_all:
self._build_all()
def _load_main_conf(self, build_all=True):
self._main = {}
if os.path.exists(self.main_conf_path) == False:
shutil.copy(os.path.join(constants.packagedir, 'cravat.yml'), self.main_conf_path)
self._main = au.load_yml_conf(self.main_conf_path)
conf_modified = False
k = 'multicore_mapper_mode'
if k not in self._main:
self._main[k] = constants.default_multicore_mapper_mode
if build_all:
self._build_all()
def _load_job_conf(self, build_all=True):
self._job = {}
if self.job_conf_path:
self._job = au.load_yml_conf(self.job_conf_path)
if build_all:
self._build_all()
def _load_module_conf(self, module_name, build_all=True):
conf_path = au.get_module_conf_path(module_name)
if conf_path is not None:
self._modules[module_name] = au.load_yml_conf(conf_path)
if build_all:
self._build_all()
def _load_main_conf(self, build_all=True):
self._main = {}
if os.path.exists(self.main_conf_path):
self._main = au.load_yml_conf(self.main_conf_path)
if build_all:
self._build_all()