import zen
import d3js
import random
import math
from time import sleep
G = zen.generating.erdos_renyi(100, 0.03)
#G = zen.io.gml.read('2013-actor-actor.gml')
#G = zen.io.edgelist.read('japanese.edgelist', ignore_duplicate_edges=True)
print G.num_edges
d3 = d3js.D3jsRenderer(G,
event_delay=0.03,
interactive=False,
node_dstyle=d3js.node_style(size=4),
node_hstyle=d3js.node_style(fill='#EB4343'),
edge_hstyle=d3js.edge_style(stroke='#EB4343',
stroke_width=5))
d3.update()
sleep(2)
# make the visualization update after every step
d3.set_interactive(True)
d3.set_title('Positioning Nodes...')
for nidx in G.nodes_iter_():
x = 250 + 230 * math.cos(math.radians(360.0 * nidx / G.num_nodes))
y = 300 + 150 * math.sin(math.radians(360.0 * nidx / G.num_nodes))
d3.position_node(nidx, x, y)
d3.clear_highlights()
d3.highlight_nodes_(list(where(x>0)[0]))
else:
d3.highlight_nodes_(list(where(cum_highlighted>0)[0]))
d3.update()
d3.set_interactive(interactive)
if keep_highlights:
return cum_highlighted
else:
return x
## Visualize
G = zen.io.gml.read('bible.gml')
d3 = d3js.D3jsRenderer(G, event_delay=0.1, interactive=False, autolaunch=True)
y=zeros(G.num_nodes)
y[1] = 1
propagate(G,d3,y,10,slp = 1)
#d3 = d3js.D3jsRenderer(G, event_delay=0.1, interactive=False, autolaunch=False)
d3.update()
sleep(1)
'''
dt = 0.05 # the "infintesimal" size steps we take to integrate
T = 6 # the end of the simulation time
time = linspace(0,T,int(T/dt)) # the array of time points spaced by dt
sys.path.append('../zend3js/')
import d3js
import csv
import progressbar
import numpy.linalg as la
import matplotlib.pyplot as plt
from scipy.linalg import solve
G = zen.Graph()
f = open('output_new.csv')
csv_f = csv.reader(f)
row = [r for r in csv_f]
for i in range(0, len(row)):
first = row[i][0]
second = row[i][1]
weight_1 = row[i][2]
if (float(weight_1) != 0):
G.add_edge(first, second, weight=float(weight_1))
##
zen.io.gml.write(G, 'Billion.gml')
d3 = d3js.D3jsRenderer(G, interactive=False, autolaunch=True)
d3.clear()
G = zen.io.gml.read('Billion.gml', directed=False)
d3.set_graph(G)
d3.update()