def __init__(self, port='ao0', saver=None):
self.port = port
self.saver = saver
self.daq = DAQ(DAQ.ANALOG_OUT, ports=[self.port])
self.trig = Trigger(5.0, dtype=np.float64)
self.end_trig = Trigger(0.0, dtype=np.float64)
self.is_on = False
def main():
global event_q
event_q = queue.Queue(maxsize=10)
# Here we import the ENV variables from docker
olympus_env_settings = {
"rate": int(environ['rate']),
"samples_per_channel": int(environ['samples_per_channel']),
"low_channel": int(environ['low_channel']),
"high_channel": int(environ['high_channel']),
"serial": environ['serial'],
"db_path": environ['db_path'],
"input_mode": environ['input_mode'],
"range": environ['volts']
}
# Instantiate the custom DAQ module
daq = DAQ(olympus_env_settings, event_callback)
try:
# Configure the hardware with our ENV variables
daq.configure_mode(olympus_env_settings['input_mode'])
# Initialize the DAQ
daq.initialize()
# Start the background acquisition process
daq.begin_acquisition()
# Olympus Event Loop
try:
while True:
# event_q holds the data coming in from the DAQ hardware
if event_q.qsize() > 0:
# Each iteration of the loop pulls the data off the FIFO
data_sample = event_q.get_nowait()
# Save the data from the FIFO
save = Save(data_sample.formatted_buffer(),
olympus_env_settings['db_path'])
save.record()
except KeyboardInterrupt:
pass
except Exception as e:
print('\n', e)
finally:
# Stop the acquisition if it is still running.
if daq.status.RUNNING:
daq.ai_device.scan_stop()
if daq.daq_device.is_connected():
daq.daq_device.disconnect()
daq.daq_device.release()
class Light(object):
OFF,ON = 0,1
def __init__(self, port='ao0', saver=None):
self.port = port
self.saver = saver
self.daq = DAQ(DAQ.ANALOG_OUT, ports=[self.port])
self.trig = Trigger(5.0, dtype=np.float64)
self.end_trig = Trigger(0.0, dtype=np.float64)
self.is_on = False
def on(self):
if self.is_on:
return
self.daq.trigger(self.trig, clear=False)
if self.saver:
self.saver.write('light', [self.ON])
self.is_on = True
def off(self):
if not self.is_on:
return
self.daq.trigger(self.end_trig, clear=False)
if self.saver:
self.saver.write('light', [self.OFF])
self.is_on = False
def end(self):
self.daq.release()
def __init__(
self, ports=["ai0", "ai1", "ai5", "ai6"], runtime_ports=[0, 1], saver=None, lick_thresh=6.0, holding_thresh=1.0
):
# IMPORTANT: NUMBER OF PORTS MUST MATCH VALUE IN EXPTS/DTYPES.PY
self.ports = ports
self.runtime_ports = runtime_ports # to be used in accumulator and lick/holding variable
self.saver = saver
self.thresh = lick_thresh
self.daq = DAQ(DAQ.ANALOG_IN, ports=self.ports, read_buffer_size=self.READ_BUF_SIZE)
self.holding_thresh = int(holding_thresh * self.daq.sample_rate)
# runtime vars
self.licked_ = np.zeros(len(self.runtime_ports))
self.accum = np.zeros((len(self.runtime_ports), self.ACCUM_SIZE))
self.holding = np.array([False, False])
self.lock = threading.Lock()
self.accum_lock = threading.Lock()
self.SAVING = False
self.start()
parser.add_argument('-g', '--graphical', action="store_true",
help="Erzeuge eine grafische Darstellung von Messreihen. Wenn diese Option \
nicht gesetzt ist wird einfach das Ergebnis einer Messung im Terminal ausgegeben.")
return parser.parse_args()
if __name__ == '__main__':
"""Dies ist die main Methode des Skripts, d.h. diese wird ausgefuehrt wenn
man das Skript direkt mit `python muonrate.py` startet."""
opt = argumente()
# Hier erzeugen wir ein Objekt namens daqcard vom Typ DAQ
daqcard = DAQ(opt.device)
# Schwellenspannungen und Trigger setzen
daqcard.set_thresholds(*opt.schwellen)
daqcard.set_trigger(opt.trigger)
if not opt.graphical:
# Messung starten
t, outputlist = daqcard.measure(opt.time)
# Ergebnisse ausgeben
print "\nErgebnis nach %.2f Sekunden Messzeit:" % t
for i in range(3):
print "Kanal %s: %.0f Ereignisse" % (i+1, outputlist[i])
print "Trigger: %.0f Ereignisse" % outputlist[4], " Stat. Fehler: %.0f Ereignisse" % math.sqrt(outputlist[4])
print "\nTriggerrate: %.2f +- %.2f Hz" % ((outputlist[4]/t), (math.sqrt(outputlist[4])/t))
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""Example data logger that saves DAQ data to a CSV file in real-time"""
import csv
from time import time
from daq import DAQ
d = DAQ()
try:
dataFile = open('data.csv', 'w+') # overwrite data file if it exists
writer = csv.writer(dataFile, quoting=csv.QUOTE_ALL)
writer.writerow(['date'] + d.source_labels) # table headers
while True: # kill/interrupt script to end program
data = [time()] + d.data()
print(data)
writer.writerow(data)
finally: # close/release everything
d.close()
dataFile.close()
class AnalogReader(object):
READ_BUF_SIZE = 10
ACCUM_SIZE = 1000
def __init__(
self, ports=["ai0", "ai1", "ai5", "ai6"], runtime_ports=[0, 1], saver=None, lick_thresh=6.0, holding_thresh=1.0
):
# IMPORTANT: NUMBER OF PORTS MUST MATCH VALUE IN EXPTS/DTYPES.PY
self.ports = ports
self.runtime_ports = runtime_ports # to be used in accumulator and lick/holding variable
self.saver = saver
self.thresh = lick_thresh
self.daq = DAQ(DAQ.ANALOG_IN, ports=self.ports, read_buffer_size=self.READ_BUF_SIZE)
self.holding_thresh = int(holding_thresh * self.daq.sample_rate)
# runtime vars
self.licked_ = np.zeros(len(self.runtime_ports))
self.accum = np.zeros((len(self.runtime_ports), self.ACCUM_SIZE))
self.holding = np.array([False, False])
self.lock = threading.Lock()
self.accum_lock = threading.Lock()
self.SAVING = False
self.start()
def start(self):
# begin reading
self.on = True
th = threading.Thread(target=self.continuous_read)
th.start()
def get_accum(self):
with self.accum_lock:
return self.accum.copy()
def continuous_read(self):
while self.on:
# read new data
with self.accum_lock:
self.accum = np.roll(self.accum, -self.READ_BUF_SIZE, axis=1)
newdat_ts, newdat = (
self.daq.get()
) # important that "get" function locks thread, otherwise update line below would repeat logic on identical data
assert newdat.shape == (len(self.ports), self.READ_BUF_SIZE)
self.accum[:, -self.READ_BUF_SIZE :] = newdat[self.runtime_ports, :]
# update logic
with self.lock:
self.licked_ += np.any(
newdat[self.runtime_ports, :] >= self.thresh, axis=1
) # is this really picking up the number of licks? no, it really represents the number of times this class queried and received a "at least 1 lick" response
self.holding = np.all(self.accum[:, -self.holding_thresh :] > self.thresh, axis=1)
if not self.on: # b/c session can end b/t start of this loop iteration and this point
break
if self.saver and self.SAVING:
self.saver.write("analogreader", newdat, ts=newdat_ts)
self.release()
def begin_saving(self):
self.SAVING = True
def licked(self):
with self.lock:
ret = self.licked_.copy()
self.licked_ = np.zeros(len(self.runtime_ports))
return ret
def end(self):
self.SAVING = False
self.on = False
def release(self):
self.daq.release()
switch_type = self._setup['naming']['control']
return site_name + switch_type + target.get('location',
'') + target['domain']
def _get_t1_dp_name(self, domain):
site_name = self._site['site_name']
switch_type = self._setup['naming']['tier1']
t1_conf = self._site['tier1']['domains'][domain]
return site_name + switch_type + t1_conf.get('location', '') + domain
def _get_t2_dp_name(self, t2_conf):
site_name = self._site['site_name']
switch_type = self._setup['naming']['tier2']
return site_name + switch_type + t2_conf.get('location',
'') + t2_conf['domain']
def _make_vlans(self):
return {
self._setup['vlan']['name']: {
'description': self._setup['vlan']['description'],
'vid': self._site['vlan_id']
}
}
def _make_dps(self, domain):
return {**self._make_t1_dps(domain), **self._make_t2_dps(domain)}
if __name__ == '__main__':
sys.exit(TopologyGenerator(DAQ(sys.argv)).process())
def main():
"""
Main file to be executed for the vibration DAQ used for CUTE
It imports the DAQ and Scope classes and modifies their behaviour using multiple threads
This file handles path related things so that the script can be called and the appropriate configuration and log files are found.
It parses command line arguments that can modify the DAQ and Scope functionality
It creates the DAQ object, starts its run method in a seperate thread.
Passes the DAQ object to the user_input function and starts that process in another thread.
The Scope object is managed in the main thread as GUI components must be in the main thread.
When the quit option is passed to the main thread all the threads join.
"""
#---------------- Path Related Things ----------------#
#make the relavent full paths
cwd = os.getcwd()
daq_path = sys.path[0]
data_path = os.path.join(daq_path, 'data')
vib_path = os.path.join(data_path, 'vib')
psd_path = os.path.join(data_path, 'psd')
#create the paths if they dont already exist
if not os.path.exists(data_path):
os.mkdir(data_path)
if not os.path.exists(vib_path):
os.mkdir(vib_path)
if not os.path.exists(psd_path):
os.mkdir(psd_path)
#---------------- Parse CLi Arguments ----------------#
try:
opts, args = getopt.getopt(sys.argv[1:], 'hsa:p:', ['help','scope','address=','port='])
except getopt.GetoptError:
usage()
sys.exit(2)
#initialize default args
address = ''
port = ''
scope_on = False
scope = None
#loop through all of the arguments
for opt, arg in opts:
#help option
if opt in ('-h','--help'):
usage()
sys.exit(0)
#address option
elif opt in ('-a','--address'):
address = arg
#port option
elif opt in ('-p','--port'):
try:
port = int(arg)
except:
raise
#scope functionality option
elif opt in ('-s','--scope'):
scope_on = True
#----------------- Setup the Logger -----------------#
#create logger
logger = logging.getLogger('vib_daq')
logger.setLevel(logging.DEBUG)
#create file handler
log_file = os.path.join(daq_path,'vib_daq.log')
fh = logging.FileHandler(log_file)
fh.setLevel(logging.DEBUG)
#create stream handler
ch = logging.StreamHandler()
ch.setLevel(logging.ERROR)
#create formatter
formatter = logging.Formatter('%(asctime)s - %(name)s - %(levelname)s - %(message)s')
#add formatter to the handlers
fh.setFormatter(formatter)
ch.setFormatter(formatter)
#add handlers to the logger
logger.addHandler(fh)
logger.addHandler(ch)
#----------------- Read Config File -----------------#
#set up config parser
config = configparser.ConfigParser()
config.optionxform = str #preserve case on import
cfg_file = os.path.join(daq_path,'vib_daq.cfg')
config.read(cfg_file)
#conversion parameters
convert = None
if 'convert' in config.sections():
convert = {key:config['convert'].getfloat(key) for key in config['convert']}
#network parameters
if not address:
address = config['network'].get('IPv4')
if not port:
port = config['network'].getint('Port')
#----------------- Start the DAQ -----------------#
#create queue for the scope
q = queue.Queue()
#create DAQ instance
daq = DAQ(address, port, q, scope_on=scope_on, convert=convert)
#create daq thread so console input can be received without blocking
daq_thread = threading.Thread(target=daq.run)
inpt_thread = threading.Thread(target=user_input,args=(daq,))
#start the threads
daq_thread.start()
inpt_thread.start()
#----------------- Control Scope -----------------#
while daq.take_data:
if daq.scope_on:
if scope is None:
#create the scope
scope = Scope(daq.fs, daq.n_frames)
if not q.empty():
traces = q.get()
scope.draw(traces)
else:
if scope is not None:
scope.close()
scope = None
#----------------- Join Threads -----------------#
#wait for the process to complete, blocks the main process
inpt_thread.join()
daq_thread.join()
#----------------- Clean Up Files -----------------#
#loop through the files in the daq directory, moving csv files with the correct formatting to the data directory
files = os.listdir(cwd)
for f in files:
if f.startswith('vib_') and f.endswith('.csv'):
src = os.path.join(cwd,f)
dst = os.path.join(vib_path,f)
os.rename(src,dst)
elif f.startswith('psd_') and f.endswith('.csv'):
src = os.path.join(cwd,f)
dst = os.path.join(psd_path,f)
os.rename(src,dst)
class MyFrame(wx.Frame):
def __init__(self, parent, id, title):
wx.Frame.__init__(
self, parent, id, title, wx.DefaultPosition, (300, 150))
self.panel = wx.Panel(self, -1)
vbox = wx.BoxSizer(wx.VERTICAL)
hbox = wx.BoxSizer(wx.HORIZONTAL)
self.floatspin = FS.FloatSpin(
self.panel, -1, pos=(50, 50), min_val=0, max_val=10,
increment=0.1, value=5, agwStyle=FS.FS_CENTRE)
self.floatspin.SetFormat("%f")
self.floatspin.SetDigits(2)
btn1 = wx.Button(self.panel, 8, 'Adjust')
btn2 = wx.Button(self.panel, 9, 'Close')
self.Bind(wx.EVT_CLOSE, self.OnClose)
btn1.Bind(wx.EVT_BUTTON, self.on_adjust)
btn2.Bind(wx.EVT_BUTTON, self.OnClose)
vbox.Add(self.floatspin, 1, wx.ALIGN_CENTRE | wx.ALL, 10)
hbox.Add(btn1, 1, wx.RIGHT, 10)
hbox.Add(btn2, 1)
vbox.Add(hbox, 0, wx.ALIGN_CENTRE | wx.ALL, 10)
self.panel.SetSizer(vbox)
self.initialize_daq()
def on_adjust(self, event):
change_voltage = self.floatspin.GetValue()
print change_voltage
self.daq.voltage[:, 2] = change_voltage
print self.daq.voltage[:, 2]
def OnClose(self, event):
self.daq_timer.Stop()
self.daq.stop_scan()
self.daq.close()
print "DAQ Closing"
self.Destroy()
def on_daq_timer(self, event):
this_time = time.clock()
print "Interval:", this_time - self.last_daq_time
self.last_daq_time = this_time
self.daq.write_voltage()
def initialize_daq(self):
rotations_per_second = 150
facets_per_rotation = 10
points_per_second = 500000
"""
This logic assumes we can get away with an integer number of
triggers per write; if we end up using a mirror with an odd
number of sides, or if the mirror isn't perfectly regular, we
might have to always use an integer number of rotations per
write, not an integer number of triggers per write.
"""
triggers_per_rotation = 2
triggers_per_second = triggers_per_rotation * rotations_per_second
points_per_trigger = points_per_second * (1.0 / triggers_per_second)
facets_per_second = rotations_per_second * facets_per_rotation
points_per_facet = points_per_second * (1.0 / facets_per_second)
print
print "Desired points per rotation:",
print points_per_trigger * triggers_per_rotation
print "Desired points per facet:", points_per_facet
points_per_facet = int(round(points_per_facet))
points_per_trigger = int(points_per_facet *
facets_per_rotation *
(1.0 / triggers_per_rotation))
print "Actual points per rotation:",
print points_per_trigger * triggers_per_rotation
print "Actual points per facet:", (points_per_trigger *
triggers_per_rotation *
(1.0 / facets_per_rotation))
print
print "Desired rotations per second:", rotations_per_second
rotations_per_second = (
points_per_second *
(1.0 / (points_per_trigger * triggers_per_rotation)))
print "Actual rotations per second:", rotations_per_second
print
points_per_write = points_per_second // 3
print "Desired write length:", points_per_write
rotations_per_write = points_per_write * 1.0 / (points_per_trigger *
triggers_per_rotation)
rotations_per_write = int(round(rotations_per_write))
points_per_write = (points_per_trigger *
triggers_per_rotation *
rotations_per_write)
print "Actual write length:", points_per_write
print "Rotations per write:", rotations_per_write
triggers_per_write = triggers_per_rotation * rotations_per_write
print "Triggers per write:", triggers_per_write
print
self.daq = DAQ(rate=points_per_second, write_length=points_per_write)
wheel_signal = np.zeros(self.daq.write_length, dtype=np.float64)
for i in range(triggers_per_write):
start = i * points_per_trigger
stop = start + points_per_trigger // 2
wheel_signal[start:stop] = 6
wheel_brake_signal = np.zeros(self.daq.write_length, dtype=np.float64)
laser_signal = np.zeros(self.daq.write_length, dtype=np.float64)
laser_duration = 1
print "Laser duration:", laser_duration * 1.0 / points_per_second,
print "seconds"
##Positive is up
laser_lag = 65
for i in range(rotations_per_write):
for n in range(1):
start = (i * points_per_trigger * triggers_per_rotation +
n * points_per_facet +
laser_lag)
stop = start + laser_duration
laser_signal[start:stop] = 10
voltage = np.zeros_like(self.daq.voltage)
voltage[:, 0] = wheel_signal
voltage[:, 1] = wheel_brake_signal
voltage[:, 2] = 5 #focusing objective
voltage[:, 3] = 0 #murrrcle
voltage[:, 6] = laser_signal
voltage[:, 7] = laser_signal
self.daq.set_voltage(voltage)
self.seconds_per_write = self.daq.write_length * 1.0 / self.daq.rate
print "Seconds per write:", self.seconds_per_write
TIMER_ID = 100
self.daq_timer = wx.Timer(self.panel, TIMER_ID)
self.daq_timer.Start(round(self.seconds_per_write * 1000 * 0.95))
wx.EVT_TIMER(self.panel, TIMER_ID, self.on_daq_timer)
self.last_daq_time = 0
self.daq.scan()
def initialize_daq(self):
rotations_per_second = 150
facets_per_rotation = 10
points_per_second = 500000
"""
This logic assumes we can get away with an integer number of
triggers per write; if we end up using a mirror with an odd
number of sides, or if the mirror isn't perfectly regular, we
might have to always use an integer number of rotations per
write, not an integer number of triggers per write.
"""
triggers_per_rotation = 2
triggers_per_second = triggers_per_rotation * rotations_per_second
points_per_trigger = points_per_second * (1.0 / triggers_per_second)
facets_per_second = rotations_per_second * facets_per_rotation
points_per_facet = points_per_second * (1.0 / facets_per_second)
print
print "Desired points per rotation:",
print points_per_trigger * triggers_per_rotation
print "Desired points per facet:", points_per_facet
points_per_facet = int(round(points_per_facet))
points_per_trigger = int(points_per_facet *
facets_per_rotation *
(1.0 / triggers_per_rotation))
print "Actual points per rotation:",
print points_per_trigger * triggers_per_rotation
print "Actual points per facet:", (points_per_trigger *
triggers_per_rotation *
(1.0 / facets_per_rotation))
print
print "Desired rotations per second:", rotations_per_second
rotations_per_second = (
points_per_second *
(1.0 / (points_per_trigger * triggers_per_rotation)))
print "Actual rotations per second:", rotations_per_second
print
points_per_write = points_per_second // 3
print "Desired write length:", points_per_write
rotations_per_write = points_per_write * 1.0 / (points_per_trigger *
triggers_per_rotation)
rotations_per_write = int(round(rotations_per_write))
points_per_write = (points_per_trigger *
triggers_per_rotation *
rotations_per_write)
print "Actual write length:", points_per_write
print "Rotations per write:", rotations_per_write
triggers_per_write = triggers_per_rotation * rotations_per_write
print "Triggers per write:", triggers_per_write
print
self.daq = DAQ(rate=points_per_second, write_length=points_per_write)
wheel_signal = np.zeros(self.daq.write_length, dtype=np.float64)
for i in range(triggers_per_write):
start = i * points_per_trigger
stop = start + points_per_trigger // 2
wheel_signal[start:stop] = 6
wheel_brake_signal = np.zeros(self.daq.write_length, dtype=np.float64)
laser_signal = np.zeros(self.daq.write_length, dtype=np.float64)
laser_duration = 1
print "Laser duration:", laser_duration * 1.0 / points_per_second,
print "seconds"
##Positive is up
laser_lag = 65
for i in range(rotations_per_write):
for n in range(1):
start = (i * points_per_trigger * triggers_per_rotation +
n * points_per_facet +
laser_lag)
stop = start + laser_duration
laser_signal[start:stop] = 10
voltage = np.zeros_like(self.daq.voltage)
voltage[:, 0] = wheel_signal
voltage[:, 1] = wheel_brake_signal
voltage[:, 2] = 5 #focusing objective
voltage[:, 3] = 0 #murrrcle
voltage[:, 6] = laser_signal
voltage[:, 7] = laser_signal
self.daq.set_voltage(voltage)
self.seconds_per_write = self.daq.write_length * 1.0 / self.daq.rate
print "Seconds per write:", self.seconds_per_write
TIMER_ID = 100
self.daq_timer = wx.Timer(self.panel, TIMER_ID)
self.daq_timer.Start(round(self.seconds_per_write * 1000 * 0.95))
wx.EVT_TIMER(self.panel, TIMER_ID, self.on_daq_timer)
self.last_daq_time = 0
self.daq.scan()
print
points_per_write = points_per_second // 10
print "Desired write length:", points_per_write
rotations_per_write = points_per_write * 1.0 / (points_per_trigger *
triggers_per_rotation)
rotations_per_write = int(round(rotations_per_write))
points_per_write = (points_per_trigger *
triggers_per_rotation *
rotations_per_write)
print "Actual write length:", points_per_write
print "Rotations per write:", rotations_per_write
triggers_per_write = triggers_per_rotation * rotations_per_write
print "Triggers per write:", triggers_per_write
print
daq = DAQ(rate=points_per_second, write_length=points_per_write)
wheel_signal = np.zeros(daq.write_length, dtype=np.float64)
for i in range(triggers_per_write):
start = i * points_per_trigger
stop = start + points_per_trigger // 2
wheel_signal[start:stop] = 6
wheel_brake_signal = np.zeros(daq.write_length, dtype=np.float64)
laser_signal = np.zeros(daq.write_length, dtype=np.float64)
laser_duration = 1
print "Laser duration:", laser_duration * 1.0 / points_per_second, "seconds"
##Positive is up
laser_lag = 65
for i in range(rotations_per_write):
for n in range(1):
print "Actual rotations per second:", rotations_per_second
print
points_per_write = points_per_second // 10
print "Desired write length:", points_per_write
rotations_per_write = points_per_write * 1.0 / (points_per_trigger *
triggers_per_rotation)
rotations_per_write = int(round(rotations_per_write))
points_per_write = (points_per_trigger * triggers_per_rotation *
rotations_per_write)
print "Actual write length:", points_per_write
print "Rotations per write:", rotations_per_write
triggers_per_write = triggers_per_rotation * rotations_per_write
print "Triggers per write:", triggers_per_write
print
daq = DAQ(rate=points_per_second, write_length=points_per_write)
wheel_signal = np.zeros(daq.write_length, dtype=np.float64)
for i in range(triggers_per_write):
start = i * points_per_trigger
stop = start + points_per_trigger // 2
wheel_signal[start:stop] = 6
wheel_brake_signal = np.zeros(daq.write_length, dtype=np.float64)
laser_signal = np.zeros(daq.write_length, dtype=np.float64)
laser_duration = 1
print "Laser duration:", laser_duration * 1.0 / points_per_second, "seconds"
##Positive is up
laser_lag = 65
for i in range(rotations_per_write):
for n in range(1):
