def main():
cfg = EvalConfig().parse()
print("Evaluate the feat: {}".format(cfg.feat))
np.random.seed(seed=cfg.seed)
test_session = cfg.test_session
test_set = prepare_dataset(cfg.feature_root, test_session, cfg.feat,
cfg.label_root)
if cfg.preprocess_func == "mean":
preprocess_func = mean_pool_input
elif cfg.preprocess_func == "max":
preprocess_func = max_pool_input
eve_embeddings = []
labels = []
for i, session in enumerate(test_set):
session_id = os.path.basename(session[1]).split('_')[0]
print("{0} / {1}: {2}".format(i, len(test_set), session_id))
eve_batch, lab_batch, _ = load_data_and_label(session[0], session[1],
preprocess_func)
eve_embeddings.append(eve_batch)
labels.append(lab_batch)
eve_embeddings = np.concatenate(eve_embeddings, axis=0)
labels = np.concatenate(labels, axis=0)
# evaluate the results
print("%d events for evaluation with dimension %d." %
(labels.shape[0], eve_embeddings.shape[1]))
mAP, mAP_event = evaluate(eve_embeddings, labels,
normalize=True) #, standardize=True)
print("mAP = {}".format(mAP))
# label_dict = pkl.load(open(cfg.label_root+'label_goal.pkl','rb'))
keys = list(mAP_event.keys())
keys = sorted(keys)
for key in keys:
print("Event {2}: {0}, mAP = {1}".format(honda_num2labels[key],
mAP_event[key], key))
def main():
cfg = TrainConfig().parse()
print(cfg.name)
result_dir = os.path.join(
cfg.result_root,
cfg.name + '_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
utils.write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
val_session = cfg.val_session
val_set = prepare_dataset(cfg.feature_root, val_session, cfg.feat,
cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
with tf.variable_scope("test"):
# load backbone model
if cfg.network == "tsn":
model_emb = networks.TSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "rtsn":
model_emb = networks.RTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
# multitask loss (verification)
#model_ver = networks.PairSim2(n_input=cfg.emb_dim)
model_ver = networks.PairSim(n_input=cfg.emb_dim)
var_list = {}
for v in tf.global_variables():
if v.op.name.startswith("test"):
var_list[v.op.name.replace("test/", "")] = v
restore_saver = tf.train.Saver(var_list)
# get the embedding
if cfg.feat == "sensors":
input_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, None])
elif cfg.feat == "resnet":
input_ph = tf.placeholder(
tf.float32, shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model_emb.forward(input_ph, dropout_ph)
if cfg.normalized:
embedding = tf.nn.l2_normalize(model_emb.hidden,
axis=-1,
epsilon=1e-10)
else:
embedding = model_emb.hidden
# split embedding into anchor, positive and negative and calculate distance
anchor, positive, negative = tf.unstack(
tf.reshape(embedding, [-1, 3, cfg.emb_dim]), 3, 1)
dist = tf.concat([
tf.reshape(utils.cdist_tf(anchor - positive), [-1, 1]),
tf.reshape(utils.cdist_tf(anchor - negative), [-1, 1])
],
axis=1)
# verification
pos_pairs = tf.concat(
[tf.expand_dims(anchor, axis=1),
tf.expand_dims(positive, axis=1)],
axis=1)
pos_label = tf.ones((tf.shape(pos_pairs)[0], ), tf.int32)
neg_pairs = tf.concat(
[tf.expand_dims(anchor, axis=1),
tf.expand_dims(negative, axis=1)],
axis=1)
neg_label = tf.zeros((tf.shape(neg_pairs)[0], ), tf.int32)
ver_pairs = tf.concat([pos_pairs, neg_pairs], axis=0)
ver_label = tf.concat([pos_label, neg_label], axis=0)
model_ver.forward(ver_pairs, dropout_ph)
prob = tf.reshape(model_ver.prob[:, 1], (-1, 1))
sim = tf.concat(
[prob[:tf.shape(pos_pairs)[0]], prob[tf.shape(pos_pairs)[0]:]],
axis=1)
pred = tf.argmax(model_ver.logits, -1)
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
with sess.as_default():
sess.run(tf.global_variables_initializer())
print("Restoring pretrained model: %s" % cfg.model_path)
restore_saver.restore(sess, cfg.model_path)
fout = open(
os.path.join(os.path.dirname(cfg.model_path),
'val_pairsim.txt'), 'w')
for i, session in enumerate(val_set):
session_id = os.path.basename(session[1]).split('_')[0]
print("{0} / {1}: {2}".format(i, len(val_set), session_id))
eve_batch, lab_batch, _ = load_data_and_label(
session[0], session[1], model_emb.prepare_input_test
) # use prepare_input_test for testing time
emb = sess.run(embedding,
feed_dict={
input_ph: eve_batch,
dropout_ph: 1.0
})
triplet_per_batch = 10
triplet_input_idx, negative_count = select_triplets(
lab_batch, emb, triplet_per_batch, 0.2)
triplet_input = eve_batch[triplet_input_idx]
dist_batch, sim_batch, pred_batch = sess.run([dist, sim, pred],
feed_dict={
input_ph:
triplet_input,
dropout_ph:
1.0
})
pdb.set_trace()
batch_label = np.hstack(
(np.ones((triplet_input.shape[0] // 3, ), dtype='int32'),
np.zeros((triplet_input.shape[0] // 3, ), dtype='int32')))
acc = accuracy_score(batch_label, pred_batch)
fout.write("{}: acc = {}\n".format(session_id, acc))
for i in range(dist_batch.shape[0]):
fout.write("{}\t{}\t{}\t{}\n".format(
dist_batch[i, 0], dist_batch[i, 1], sim_batch[i, 0],
sim_batch[i, 1]))
fout.close()
def main():
cfg = TrainConfig().parse()
print(cfg.name)
result_dir = os.path.join(
cfg.result_root,
cfg.name + '_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
train_session = cfg.train_session
tfrecords_files = glob.glob(cfg.tfrecords_root + '*.tfrecords')
tfrecords_files = sorted(tfrecords_files)
train_set = [
f for f in tfrecords_files
if os.path.basename(f).split('_')[0] in train_session
]
print("Number of training events: %d" % len(train_set))
val_session = cfg.val_session
val_set = prepare_dataset(cfg.feature_root, val_session, cfg.feat,
cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
# load backbone model
if cfg.network == "tsn":
model = networks.ConvTSNClassifier(n_seg=cfg.num_seg,
output_keep_prob=cfg.keep_prob)
# get prediction
input_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, None, None, None])
output_ph = tf.placeholder(tf.int32, shape=[None])
model.forward(input_ph)
embedding = tf.nn.l2_normalize(model.feat,
axis=1,
epsilon=1e-10,
name='embedding')
logits = model.logits
pred = tf.argmax(logits, 1)
# variable for visualizing the embeddings
emb_var = tf.Variable([0.0], name='embeddings')
set_emb = tf.assign(emb_var, embedding, validate_shape=False)
loss = tf.reduce_mean(
tf.nn.sparse_softmax_cross_entropy_with_logits(labels=output_ph,
logits=logits))
regularization_loss = tf.reduce_sum(
tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES))
total_loss = loss + regularization_loss * cfg.lambda_l2
tf.summary.scalar('learning_rate', lr_ph)
train_op = utils.optimize(total_loss, global_step, cfg.optimizer,
lr_ph, tf.global_variables())
saver = tf.train.Saver(max_to_keep=10)
summary_op = tf.summary.merge_all()
# session iterator for session sampling
tf_paths_ph = tf.placeholder(tf.string, shape=[None])
train_data = event_generator(tf_paths_ph,
cfg.feat_dict,
cfg.context_dict,
event_per_batch=cfg.event_per_batch,
num_threads=1,
shuffled=True,
preprocess_func=model.prepare_input_tf)
train_sess_iterator = train_data.make_initializable_iterator()
next_train = train_sess_iterator.get_next()
# prepare validation data
val_feats = []
val_labels = []
for session in val_set:
eve_batch, lab_batch, _ = load_data_and_label(
session[0], session[1], model.prepare_input_test)
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_feats = np.concatenate(val_feats, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
print("Shape of val_feats: ", val_feats.shape)
# generate metadata.tsv for visualize embedding
with open(os.path.join(result_dir, 'metadata_val.tsv'), 'w') as fout:
for v in val_labels:
fout.write('%d\n' % int(v))
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
summary_writer = tf.summary.FileWriter(result_dir, sess.graph)
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load pretrain model, if needed
if cfg.pretrained_model:
print("Restoring pretrained model: %s" % cfg.pretrained_model)
saver.restore(sess, cfg.pretrained_model)
################## Training loop ##################
epoch = 0
while epoch < cfg.max_epochs:
step = sess.run(global_step, feed_dict=None)
# learning rate schedule, reference: "In defense of Triplet Loss"
if epoch < cfg.static_epochs:
learning_rate = cfg.learning_rate
else:
learning_rate = cfg.learning_rate * \
0.001**((epoch-cfg.static_epochs)/(cfg.max_epochs-cfg.static_epochs))
sess.run(train_sess_iterator.initializer,
feed_dict={tf_paths_ph: train_set})
# for each epoch
batch_count = 1
while True:
try:
start_time_select = time.time()
context, feature_lists = sess.run(next_train)
select_time = time.time() - start_time_select
eve = feature_lists[cfg.feat].reshape(
(-1, cfg.num_seg) + cfg.feat_dim[cfg.feat])
lab = context['label']
# perform training on the batch
start_time_train = time.time()
err, y_pred, _, step, summ = sess.run([
total_loss, pred, train_op, global_step, summary_op
],
feed_dict={
input_ph:
eve,
output_ph:
lab,
lr_ph:
learning_rate
})
# classification accuracy on batch
acc = accuracy_score(lab, y_pred)
train_time = time.time() - start_time_train
print ("Epoch: [%d: %d]\tSelect_time: %.3f\tTrain_time: %.3f\tLoss: %.4f\tAcc: %.4f" % \
(epoch+1, batch_count, select_time, train_time, err, acc))
summary = tf.Summary(value=[
tf.Summary.Value(tag="train_loss",
simple_value=err),
tf.Summary.Value(tag="train_acc", simple_value=acc)
])
summary_writer.add_summary(summary, step)
summary_writer.add_summary(summ, step)
batch_count += 1
except tf.errors.OutOfRangeError:
print("Epoch %d done!" % (epoch + 1))
epoch += 1
break
# validation on val_set
print("Evaluating on validation set...")
val_embeddings, val_pred, _ = sess.run(
[embedding, pred, set_emb],
feed_dict={input_ph: val_feats})
acc = accuracy_score(val_labels, val_pred)
mAP, _ = utils.evaluate(val_embeddings, val_labels)
summary = tf.Summary(value=[
tf.Summary.Value(tag="Valiation mAP", simple_value=mAP),
tf.Summary.Value(tag="Validation ACC", simple_value=acc)
])
summary_writer.add_summary(summary, step)
# config for embedding visualization
config = projector.ProjectorConfig()
visual_embedding = config.embeddings.add()
visual_embedding.tensor_name = emb_var.name
visual_embedding.metadata_path = os.path.join(
result_dir, 'metadata_val.tsv')
projector.visualize_embeddings(summary_writer, config)
# write summary and save model
saver.save(sess,
os.path.join(result_dir, cfg.name + '.ckpt'),
global_step=step)
def main():
cfg = TrainConfig().parse()
print(cfg.name)
result_dir = os.path.join(
cfg.result_root,
cfg.name + '_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
utils.write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
train_session = cfg.train_session
train_set = prepare_multimodal_dataset(cfg.feature_root, train_session,
cfg.feat, cfg.label_root)
batch_per_epoch = len(train_set) // cfg.sess_per_batch
val_session = cfg.val_session
val_set = prepare_multimodal_dataset(cfg.feature_root, val_session,
cfg.feat, cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
####################### Load models here ########################
with tf.variable_scope("modality_core"):
# load backbone model
if cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convbirtsn":
model_emb = networks.ConvBiRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
input_ph = tf.placeholder(
tf.float32, shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model_emb.forward(input_ph,
dropout_ph) # for lstm has variable scope
with tf.variable_scope("modality_sensors"):
sensors_emb_dim = 32
model_emb_sensors = networks.RTSN(n_seg=cfg.num_seg,
emb_dim=sensors_emb_dim)
model_pairsim_sensors = networks.PairSim(n_input=sensors_emb_dim)
input_sensors_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, 8])
model_emb_sensors.forward(input_sensors_ph, dropout_ph)
var_list = {}
for v in tf.global_variables():
if v.op.name.startswith("modality_sensors"):
var_list[v.op.name.replace("modality_sensors/", "")] = v
restore_saver_sensors = tf.train.Saver(var_list)
############################# Forward Pass #############################
# Core branch
if cfg.normalized:
embedding = tf.nn.l2_normalize(model_emb.hidden,
axis=-1,
epsilon=1e-10)
else:
embedding = model_emb.hidden
# variable for visualizing the embeddings
emb_var = tf.Variable([0.0], name='embeddings')
set_emb = tf.assign(emb_var, embedding, validate_shape=False)
# calculated for monitoring all-pair embedding distance
diffs = utils.all_diffs_tf(embedding, embedding)
all_dist = utils.cdist_tf(diffs)
tf.summary.histogram('embedding_dists', all_dist)
# split embedding into anchor, positive and negative and calculate triplet loss
anchor, positive, negative = tf.unstack(
tf.reshape(embedding, [-1, 3, cfg.emb_dim]), 3, 1)
# Sensors branch
emb_sensors = model_emb_sensors.hidden
A_sensors, B_sensors, C_sensors = tf.unstack(
tf.reshape(emb_sensors, [-1, 3, sensors_emb_dim]), 3, 1)
AB_pairs_sensors = tf.stack([A_sensors, B_sensors], axis=1)
AC_pairs_sensors = tf.stack([A_sensors, C_sensors], axis=1)
pairs_sensors = tf.concat([AB_pairs_sensors, AC_pairs_sensors], axis=0)
model_pairsim_sensors.forward(pairs_sensors, dropout_ph)
prob_sensors = model_pairsim_sensors.prob
prob_sensors = tf.concat([
prob_sensors[:tf.shape(A_sensors)[0]],
prob_sensors[tf.shape(A_sensors)[0]:]
],
axis=1) # shape: [N, 4]
# fuse prob from all modalities
prob = prob_sensors
############################# Calculate loss #############################
# triplet loss for labeled inputs
metric_loss1 = networks.triplet_loss(anchor, positive, negative,
cfg.alpha)
# weighted triplet loss for multimodal inputs
mul_num = tf.shape(prob)[0]
metric_loss2 = networks.triplet_loss(anchor[:mul_num],
positive[:mul_num],
negative[:mul_num], cfg.alpha)
weighted_metric_loss, weights = networks.weighted_triplet_loss(
anchor[-mul_num:], positive[-mul_num:], negative[-mul_num:],
prob[:, 1], prob[:, 3], cfg.alpha)
unimodal_var_list = [
v for v in tf.global_variables()
if v.op.name.startswith("modality_core")
]
# whether to apply joint optimization
if cfg.no_joint:
multimodal_var_list = unimodal_var_list
else:
multimodal_var_list = tf.global_variables()
regularization_loss = tf.reduce_sum(
tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES))
unimodal_loss = metric_loss1 + regularization_loss * cfg.lambda_l2
multimodal_loss = metric_loss2 + cfg.lambda_multimodal * weighted_metric_loss + regularization_loss * cfg.lambda_l2
tf.summary.scalar('learning_rate', lr_ph)
unimodal_train_op = utils.optimize(unimodal_loss, global_step,
cfg.optimizer, lr_ph,
unimodal_var_list)
multimodal_train_op = utils.optimize(multimodal_loss, global_step,
cfg.optimizer, lr_ph,
multimodal_var_list)
saver = tf.train.Saver(max_to_keep=10)
summary_op = tf.summary.merge_all(
) # not logging histogram of variables because it will cause problem when only unimodal_train_op is called
summ_prob = tf.summary.histogram('Prob_histogram', prob)
summ_weights = tf.summary.histogram('Weights_histogram', weights)
#########################################################################
# session iterator for session sampling
feat_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
feat2_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
label_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
train_data = multimodal_session_generator(
feat_paths_ph,
feat2_paths_ph,
label_paths_ph,
sess_per_batch=cfg.sess_per_batch,
num_threads=2,
shuffled=False,
preprocess_func=[
model_emb.prepare_input, model_emb_sensors.prepare_input
])
train_sess_iterator = train_data.make_initializable_iterator()
next_train = train_sess_iterator.get_next()
# prepare validation data
val_sess = []
val_feats = []
val_feats2 = []
val_labels = []
val_boundaries = []
for session in val_set:
session_id = os.path.basename(session[1]).split('_')[0]
eve_batch, lab_batch, boundary = load_data_and_label(
session[0], session[-1], model_emb.prepare_input_test
) # use prepare_input_test for testing time
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_sess.extend([session_id] * eve_batch.shape[0])
val_boundaries.extend(boundary)
eve2_batch, _, _ = load_data_and_label(session[1], session[-1],
utils.mean_pool_input)
val_feats2.append(eve2_batch)
val_feats = np.concatenate(val_feats, axis=0)
val_feats2 = np.concatenate(val_feats2, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
print("Shape of val_feats: ", val_feats.shape)
# generate metadata.tsv for visualize embedding
with open(os.path.join(result_dir, 'metadata_val.tsv'), 'w') as fout:
fout.write('id\tlabel\tsession_id\tstart\tend\n')
for i in range(len(val_sess)):
fout.write('{0}\t{1}\t{2}\t{3}\t{4}\n'.format(
i, val_labels[i, 0], val_sess[i], val_boundaries[i][0],
val_boundaries[i][1]))
#########################################################################
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
summary_writer = tf.summary.FileWriter(result_dir, sess.graph)
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load pretrain model, if needed
if cfg.model_path:
print("Restoring pretrained model: %s" % cfg.model_path)
saver.restore(sess, cfg.model_path)
#print ("Restoring sensors model: %s" % cfg.sensors_path)
restore_saver_sensors.restore(sess, cfg.sensors_path)
################## Training loop ##################
epoch = -1
while epoch < cfg.max_epochs - 1:
step = sess.run(global_step, feed_dict=None)
epoch = step // batch_per_epoch
# learning rate schedule, reference: "In defense of Triplet Loss"
if epoch < cfg.static_epochs:
learning_rate = cfg.learning_rate
else:
learning_rate = cfg.learning_rate * \
0.001**((epoch-cfg.static_epochs)/(cfg.max_epochs-cfg.static_epochs))
# prepare data for this epoch
random.shuffle(train_set)
paths = list(zip(*[iter(train_set)] * cfg.sess_per_batch))
feat_paths = [[p[0] for p in path] for path in paths]
feat2_paths = [[p[1] for p in path] for path in paths]
label_paths = [[p[-1] for p in path] for path in paths]
sess.run(train_sess_iterator.initializer,
feed_dict={
feat_paths_ph: feat_paths,
feat2_paths_ph: feat2_paths,
label_paths_ph: label_paths
})
# for each epoch
batch_count = 1
while True:
try:
##################### Data loading ########################
start_time = time.time()
eve, eve_sensors, lab = sess.run(next_train)
load_time = time.time() - start_time
##################### Triplet selection #####################
start_time = time.time()
# Get the embeddings of all events
eve_embedding = np.zeros((eve.shape[0], cfg.emb_dim),
dtype='float32')
for start, end in zip(
range(0, eve.shape[0], cfg.batch_size),
range(cfg.batch_size,
eve.shape[0] + cfg.batch_size,
cfg.batch_size)):
end = min(end, eve.shape[0])
emb = sess.run(embedding,
feed_dict={
input_ph: eve[start:end],
dropout_ph: 1.0
})
eve_embedding[start:end] = np.copy(emb)
# sample triplets within sampled sessions
triplet_input_idx, negative_count = utils.select_triplets_facenet(
lab,
eve_embedding,
cfg.triplet_per_batch,
cfg.alpha,
num_negative=cfg.num_negative)
if triplet_input_idx is None:
continue
multimodal_count = 0
if epoch >= cfg.multimodal_epochs:
# Get the similairty prediction of all pos-neg pairs
pos_neg_idx = pos_neg_pairs(lab)
sim_prob = np.zeros((eve.shape[0], eve.shape[0]),
dtype='float32') * np.nan
for start, end in zip(
range(0, len(pos_neg_idx),
3 * cfg.batch_size),
range(
3 * cfg.batch_size,
len(pos_neg_idx) + 3 * cfg.batch_size,
3 * cfg.batch_size)):
####### for debugging
if pos_neg_idx is None:
pdb.set_trace()
end = min(end, len(pos_neg_idx))
batch_idx = pos_neg_idx[start:end]
batch_prob, histo_prob = sess.run(
[prob, summ_prob],
feed_dict={
input_sensors_ph:
eve_sensors[batch_idx],
dropout_ph: 1.0
})
summary_writer.add_summary(histo_prob, step)
for i in range(batch_prob.shape[0]):
sim_prob[batch_idx[i * 3],
batch_idx[i * 3 + 1]] = np.copy(
batch_prob[i, 1])
# post-process the similarity prediction matrix [N,N]
# average two predictions sim(A,B) and sim(B,A)
# not implemented because of nan for backgrounds
#sim_prob = 0.5 * (sim_prob + sim_prob.T)
# sample triplets from similarity prediction
# maximum number not exceed the number of triplet_input from facenet selection
if cfg.multimodal_select == "confidence":
multimodal_input_idx, multimodal_count = select_triplets_multimodal(
sim_prob,
threshold=0.9,
max_num=len(triplet_input_idx) // 3)
elif cfg.multimodal_select == "nopos":
multimodal_input_idx, multimodal_count = nopos_triplets_multimodal(
sim_prob,
max_num=len(triplet_input_idx) // 3)
elif cfg.multimodal_select == "random":
multimodal_input_idx, multimodal_count = random_triplets_multimodal(
sim_prob,
max_num=len(triplet_input_idx) // 3)
else:
raise NotImplementedError
print(len(triplet_input_idx),
len(multimodal_input_idx), multimodal_count)
sensors_input = eve_sensors[multimodal_input_idx]
triplet_input_idx.extend(multimodal_input_idx)
triplet_input = eve[triplet_input_idx]
select_time = time.time() - start_time
if len(triplet_input.shape) > 5: # debugging
pdb.set_trace()
##################### Start training ########################
# be careful that for multimodal_count = 0 we just optimize unimodal part
if epoch < cfg.multimodal_epochs or multimodal_count == 0:
err, metric_err, _, step, summ = sess.run(
[
unimodal_loss, metric_loss1,
unimodal_train_op, global_step, summary_op
],
feed_dict={
input_ph: triplet_input,
dropout_ph: cfg.keep_prob,
lr_ph: learning_rate
})
mul_err = 0.0
else:
err, w, metric_err, mul_err, _, step, summ, histo_w = sess.run(
[
multimodal_loss, weights, metric_loss2,
weighted_metric_loss, multimodal_train_op,
global_step, summary_op, summ_weights
],
feed_dict={
input_ph: triplet_input,
input_sensors_ph: sensors_input,
dropout_ph: cfg.keep_prob,
lr_ph: learning_rate
})
# add summary of weights histogram
summary_writer.add_summary(histo_w, step)
print ("%s\tEpoch: [%d][%d/%d]\tEvent num: %d\tTriplet num: %d\tLoad time: %.3f\tSelect time: %.3f\tLoss %.4f" % \
(cfg.name, epoch+1, batch_count, batch_per_epoch, eve.shape[0], triplet_input.shape[0]//3, load_time, select_time, err))
summary = tf.Summary(value=[
tf.Summary.Value(tag="train_loss",
simple_value=err),
tf.Summary.Value(tag="negative_count",
simple_value=negative_count),
tf.Summary.Value(tag="multimodal_count",
simple_value=multimodal_count),
tf.Summary.Value(tag="metric_loss",
simple_value=metric_err),
tf.Summary.Value(tag="weghted_metric_loss",
simple_value=mul_err)
])
summary_writer.add_summary(summary, step)
summary_writer.add_summary(summ, step)
batch_count += 1
except tf.errors.OutOfRangeError:
print("Epoch %d done!" % (epoch + 1))
break
# validation on val_set
print("Evaluating on validation set...")
val_embeddings, _ = sess.run([embedding, set_emb],
feed_dict={
input_ph: val_feats,
dropout_ph: 1.0
})
mAP, mPrec = utils.evaluate_simple(val_embeddings, val_labels)
summary = tf.Summary(value=[
tf.Summary.Value(tag="Valiation mAP", simple_value=mAP),
tf.Summary.Value(tag="Validation [email protected]",
simple_value=mPrec)
])
summary_writer.add_summary(summary, step)
print("Epoch: [%d]\tmAP: %.4f\tmPrec: %.4f" %
(epoch + 1, mAP, mPrec))
# config for embedding visualization
config = projector.ProjectorConfig()
visual_embedding = config.embeddings.add()
visual_embedding.tensor_name = emb_var.name
visual_embedding.metadata_path = os.path.join(
result_dir, 'metadata_val.tsv')
projector.visualize_embeddings(summary_writer, config)
# save model
saver.save(sess,
os.path.join(result_dir, cfg.name + '.ckpt'),
global_step=step)
def main():
cfg = TrainConfig().parse()
print(cfg.name)
np.random.seed(seed=cfg.seed)
# prepare dataset
val_session = cfg.val_session
val_set = prepare_dataset(cfg.feature_root, val_session, cfg.feat,
cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
with tf.variable_scope("modality_sensors"):
sensors_emb_dim = 32
model_emb_sensors = networks.RTSN(n_seg=cfg.num_seg,
emb_dim=sensors_emb_dim,
n_input=cfg.n_input)
model_pairsim_sensors = networks.PairSim(n_input=sensors_emb_dim)
input_sensors_ph = tf.placeholder(
tf.float32, shape=[None, cfg.num_seg, cfg.n_input])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model_emb_sensors.forward(input_sensors_ph, dropout_ph)
var_list = {}
for v in tf.global_variables():
if v.op.name.startswith("modality_sensors"):
var_list[v.op.name.replace("modality_sensors/", "")] = v
restore_saver_sensors = tf.train.Saver(var_list)
# Sensors branch
emb_sensors = model_emb_sensors.hidden
A_sensors = emb_sensors[:(tf.shape(emb_sensors)[0] // 2)]
B_sensors = emb_sensors[(tf.shape(emb_sensors)[0] // 2):]
AB_pairs_sensors = tf.stack([A_sensors, B_sensors], axis=1)
model_pairsim_sensors.forward(AB_pairs_sensors, dropout_ph)
prob_sensors = model_pairsim_sensors.prob
# prepare validation data
val_sess = []
val_feats = []
val_labels = []
val_boundaries = []
for session in val_set:
session_id = os.path.basename(session[1]).split('_')[0]
eve_batch, lab_batch, boundary = load_data_and_label(
session[0], session[-1], model_emb_sensors.prepare_input_test
) # use prepare_input_test for testing time
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_sess.extend([session_id] * eve_batch.shape[0])
val_boundaries.extend(boundary)
val_feats = np.concatenate(val_feats, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
print("Shape of val_feats: ", val_feats.shape)
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
with sess.as_default():
sess.run(tf.global_variables_initializer())
print("Restoring pretrained model: %s" % cfg.model_path)
restore_saver_sensors.restore(sess, cfg.model_path)
fout = open(
os.path.join(os.path.dirname(cfg.model_path),
'val_inconsistent.txt'), 'w')
fout.write('id_A\tid_B\tlabel_A\tlabel_B\tprob_0\tprob_1\n')
for i in range(val_feats.shape[0]):
print("%d/%d" % (i, val_feats.shape[0]))
if val_labels[i] == 0:
continue
A_input = np.tile(val_feats[i], (val_feats.shape[0], 1, 1))
AB_input = np.vstack((A_input, val_feats))
temp_prob = sess.run(prob_sensors,
feed_dict={
input_sensors_ph: AB_input,
dropout_ph: 1.0
})
for j in range(temp_prob.shape[0]):
if val_labels[i] == val_labels[j] and temp_prob[j,
0] > 0.95:
fout.write("{}\t{}\t{}\t{}\t{}\t{}\n".format(
i, j, val_labels[i, 0], val_labels[j, 0],
temp_prob[j, 0], temp_prob[j, 1]))
elif val_labels[i] != val_labels[j] and temp_prob[
j, 1] > 0.95:
fout.write("{}\t{}\t{}\t{}\t{}\t{}\n".format(
i, j, val_labels[i, 0], val_labels[j, 0],
temp_prob[j, 0], temp_prob[j, 1]))
fout.close()
def main():
cfg = TrainConfig().parse()
print(cfg.name)
result_dir = os.path.join(
cfg.result_root,
cfg.name + '_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
utils.write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
train_session = cfg.train_session
tfrecords_files = glob.glob(cfg.tfrecords_root + '*.tfrecords')
tfrecords_files = sorted(tfrecords_files)
train_set = [
f for f in tfrecords_files
if os.path.basename(f).split('_')[0] in train_session
]
print("Number of training events: %d" % len(train_set))
val_session = cfg.val_session
val_set = prepare_dataset(cfg.feature_root, val_session, cfg.feat,
cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
# load backbone model and get the embdding
if cfg.network == "tsn":
model = networks.ConvTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
input_ph = tf.placeholder(
tf.float32, shape=[None, cfg.num_seg, None, None, None])
seqlen_ph = tf.placeholder(tf.int32,
shape=[None]) # fake, for consistency
model.forward(input_ph)
elif cfg.network == "lstm":
model = networks.ConvLSTM(max_time=cfg.MAX_LENGTH_FRAMES,
emb_dim=cfg.emb_dim)
input_ph = tf.placeholder(
tf.float32,
shape=[None, cfg.MAX_LENGTH_FRAMES, None, None, None])
seqlen_ph = tf.placeholder(tf.int32, shape=[None])
model.forward(input_ph, seqlen_ph)
if cfg.normalized:
embedding = tf.nn.l2_normalize(model.hidden,
axis=-1,
epsilon=1e-10)
else:
embedding = model.hidden
# variable for visualizing the embeddings
emb_var = tf.Variable([0.0], name='embeddings')
set_emb = tf.assign(emb_var, embedding, validate_shape=False)
# calculated for monitoring all-pair embedding distance
diffs = utils.all_diffs_tf(embedding, embedding)
all_dist = utils.cdist_tf(diffs)
tf.summary.histogram('embedding_dists', all_dist)
# split embedding into anchor, positive and negative and calculate triplet loss
anchor, positive, negative = tf.unstack(
tf.reshape(embedding, [-1, 3, cfg.emb_dim]), 3, 1)
triplet_loss = networks.triplet_loss(anchor, positive, negative,
cfg.alpha)
regularization_loss = tf.reduce_sum(
tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES))
total_loss = triplet_loss + regularization_loss * cfg.lambda_l2
tf.summary.scalar('learning_rate', lr_ph)
train_op = utils.optimize(total_loss, global_step, cfg.optimizer,
lr_ph, tf.global_variables())
saver = tf.train.Saver(max_to_keep=10)
summary_op = tf.summary.merge_all()
# session iterator for session sampling
tf_paths_ph = tf.placeholder(tf.string, shape=[None])
feat_dict = {'resnet': 98304}
context_dict = {'label': 'int', 'length': 'int'}
train_data = event_generator(tf_paths_ph,
feat_dict,
context_dict,
event_per_batch=cfg.event_per_batch,
num_threads=4,
shuffled=True,
preprocess_func=model.prepare_input_tf)
train_sess_iterator = train_data.make_initializable_iterator()
next_train = train_sess_iterator.get_next()
# prepare validation data
val_feats = []
val_labels = []
val_lengths = []
for session in val_set:
eve_batch, lab_batch, bou_batch = load_data_and_label(
session[0], session[1], model.prepare_input)
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_lengths.extend([b[1] - b[0] for b in bou_batch])
val_feats = np.concatenate(val_feats, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
val_lengths = np.asarray(val_lengths, dtype='int32')
print("Shape of val_feats: ", val_feats.shape)
# generate metadata.tsv for visualize embedding
with open(os.path.join(result_dir, 'metadata_val.tsv'), 'w') as fout:
for v in val_labels:
fout.write('%d\n' % int(v))
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
summary_writer = tf.summary.FileWriter(result_dir, sess.graph)
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load pretrain model, if needed
if cfg.pretrained_model:
print("Restoring pretrained model: %s" % cfg.pretrained_model)
saver.restore(sess, cfg.pretrained_model)
################## Training loop ##################
epoch = 0
while epoch < cfg.max_epochs:
step = sess.run(global_step, feed_dict=None)
# learning rate schedule, reference: "In defense of Triplet Loss"
if epoch < cfg.static_epochs:
learning_rate = cfg.learning_rate
else:
learning_rate = cfg.learning_rate * \
0.001**((epoch-cfg.static_epochs)/(cfg.max_epochs-cfg.static_epochs))
sess.run(train_sess_iterator.initializer,
feed_dict={tf_paths_ph: train_set})
# for each epoch
batch_count = 1
while True:
try:
start_time_select = time.time()
context, feature_lists = sess.run(next_train)
select_time = time.time() - start_time_select
eve = feature_lists[cfg.feat].reshape(
(-1, cfg.num_seg) + cfg.feat_dim[cfg.feat])
lab = context['label']
seq_len = context['length']
# Get the embeddings of all events
eve_embedding = np.zeros((eve.shape[0], cfg.emb_dim),
dtype='float32')
for start, end in zip(
range(0, eve.shape[0], cfg.batch_size),
range(cfg.batch_size,
eve.shape[0] + cfg.batch_size,
cfg.batch_size)):
end = min(end, eve.shape[0])
emb = sess.run(embedding,
feed_dict={
input_ph: eve[start:end],
seqlen_ph: seq_len[start:end]
})
eve_embedding[start:end] = emb
# Second, sample triplets within sampled sessions
# return the triplet input indices
if cfg.triplet_select == 'random':
triplet_input = select_triplets_random(
eve, lab, cfg.triplet_per_batch)
negative_count = 0
elif cfg.triplet_select == 'facenet':
if epoch < cfg.negative_epochs:
triplet_input = select_triplets_random(
eve, lab, cfg.triplet_per_batch)
negative_count = 0
else:
triplet_input_idx, negative_count = select_triplets_facenet(
lab,
eve_embedding,
cfg.triplet_per_batch,
cfg.alpha,
metric=cfg.metric)
else:
raise NotImplementedError
select_time2 = time.time(
) - start_time_select - select_time1
if triplet_input_idx is not None:
triplet_input = eve[triplet_input_idx]
triplet_length = seq_len[triplet_input_idx]
start_time_train = time.time()
# perform training on the selected triplets
err, _, step, summ = sess.run(
[
total_loss, train_op, global_step,
summary_op
],
feed_dict={
input_ph: triplet_input,
seqlen_ph: triplet_length,
lr_ph: learning_rate
})
train_time = time.time() - start_time_train
print ("Epoch: [%d][%d/%d]\tEvent num: %d\tTriplet num: %d\tSelect_time1: %.3f\tSelect_time2: %.3f\tTrain_time: %.3f\tLoss %.4f" % \
(epoch+1, batch_count, batch_per_epoch, eve.shape[0], triplet_input.shape[0], select_time1, select_time2, train_time, err))
summary = tf.Summary(value=[
tf.Summary.Value(tag="train_loss",
simple_value=err),
tf.Summary.Value(tag="negative_count",
simple_value=negative_count),
tf.Summary.Value(tag="select_time1",
simple_value=select_time1)
])
summary_writer.add_summary(summary, step)
summary_writer.add_summary(summ, step)
batch_count += 1
except tf.errors.OutOfRangeError:
print("Epoch %d done!" % (epoch + 1))
break
# validation on val_set
print("Evaluating on validation set...")
val_embeddings, _ = sess.run([embedding, set_emb],
feed_dict={
input_ph: val_feats,
seqlen_ph: val_lengths
})
mAP, _ = utils.evaluate(val_embeddings, val_labels)
summary = tf.Summary(value=[
tf.Summary.Value(tag="Valiation mAP", simple_value=mAP)
])
summary_writer.add_summary(summary, step)
# config for embedding visualization
config = projector.ProjectorConfig()
visual_embedding = config.embeddings.add()
visual_embedding.tensor_name = emb_var.name
visual_embedding.metadata_path = os.path.join(
result_dir, 'metadata_val.tsv')
projector.visualize_embeddings(summary_writer, config)
# save model
saver.save(sess,
os.path.join(result_dir, cfg.name + '.ckpt'),
global_step=step)
def main():
cfg = TrainConfig().parse()
print(cfg.name)
result_dir = os.path.join(
cfg.result_root,
cfg.name + '_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
utils.write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
train_session = cfg.train_session
train_set = prepare_multimodal_dataset(cfg.feature_root, train_session,
cfg.feat, cfg.label_root)
if cfg.task == "supervised": # fully supervised task
train_set = train_set[:cfg.label_num]
batch_per_epoch = len(train_set) // cfg.sess_per_batch
labeled_session = train_session[:cfg.label_num]
val_session = cfg.val_session
val_set = prepare_multimodal_dataset(cfg.feature_root, val_session,
cfg.feat, cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
####################### Load models here ########################
sensors_emb_dim = 32
segment_emb_dim = 32
with tf.variable_scope("modality_core"):
# load backbone model
if cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convbirtsn":
model_emb = networks.ConvBiRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
input_ph = tf.placeholder(
tf.float32, shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model_emb.forward(input_ph,
dropout_ph) # for lstm has variable scope
with tf.variable_scope("sensors"):
model_output_sensors = networks.OutputLayer(
n_input=cfg.emb_dim, n_output=sensors_emb_dim)
with tf.variable_scope("segment"):
model_output_segment = networks.OutputLayer(
n_input=cfg.emb_dim, n_output=segment_emb_dim)
lambda_mul_ph = tf.placeholder(tf.float32, shape=[])
with tf.variable_scope("modality_sensors"):
model_emb_sensors = networks.RTSN(n_seg=cfg.num_seg,
emb_dim=sensors_emb_dim)
input_sensors_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, 8])
model_emb_sensors.forward(input_sensors_ph, dropout_ph)
var_list = {}
for v in tf.global_variables():
if v.op.name.startswith("modality_sensors"):
var_list[v.op.name.replace("modality_sensors/", "")] = v
restore_saver_sensors = tf.train.Saver(var_list)
with tf.variable_scope("modality_segment"):
model_emb_segment = networks.RTSN(n_seg=cfg.num_seg,
emb_dim=segment_emb_dim,
n_input=357)
input_segment_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, 357])
model_emb_segment.forward(input_segment_ph, dropout_ph)
var_list = {}
for v in tf.global_variables():
if v.op.name.startswith("modality_segment"):
var_list[v.op.name.replace("modality_segment/", "")] = v
restore_saver_segment = tf.train.Saver(var_list)
############################# Forward Pass #############################
if cfg.normalized:
embedding = tf.nn.l2_normalize(model_emb.hidden,
axis=-1,
epsilon=1e-10)
embedding_sensors = tf.nn.l2_normalize(model_emb_sensors.hidden,
axis=-1,
epsilon=1e-10)
embedding_segment = tf.nn.l2_normalize(model_emb_segment.hidden,
axis=-1,
epsilon=1e-10)
else:
embedding = model_emb.hidden
embedding_sensors = model_emb_sensors.hidden
embedding_segment = model_emb_segment.hidden
# get the number of unsupervised training
unsup_num = tf.shape(input_sensors_ph)[0]
# variable for visualizing the embeddings
emb_var = tf.Variable(tf.zeros([1116, cfg.emb_dim], dtype=tf.float32),
name='embeddings')
set_emb = tf.assign(emb_var, embedding, validate_shape=False)
# calculated for monitoring all-pair embedding distance
diffs = utils.all_diffs_tf(embedding, embedding)
all_dist = utils.cdist_tf(diffs)
tf.summary.histogram('embedding_dists', all_dist)
# split embedding into anchor, positive and negative and calculate triplet loss
anchor, positive, negative = tf.unstack(
tf.reshape(embedding[:-unsup_num], [-1, 3, cfg.emb_dim]), 3, 1)
metric_loss = networks.triplet_loss(anchor, positive, negative,
cfg.alpha)
model_output_sensors.forward(tf.nn.relu(embedding[-unsup_num:]),
dropout_ph)
logits_sensors = model_output_sensors.logits
model_output_segment.forward(tf.nn.relu(embedding[-unsup_num:]),
dropout_ph)
logits_segment = model_output_segment.logits
# MSE loss
MSE_loss_sensors = tf.losses.mean_squared_error(
embedding_sensors, logits_sensors) / sensors_emb_dim
MSE_loss_segment = tf.losses.mean_squared_error(
embedding_sensors, logits_segment) / segment_emb_dim
MSE_loss = MSE_loss_sensors + MSE_loss_segment
regularization_loss = tf.reduce_sum(
tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES))
total_loss = tf.cond(
tf.equal(unsup_num,
tf.shape(embedding)[0]), lambda: MSE_loss * lambda_mul_ph
+ regularization_loss * cfg.lambda_l2, lambda: metric_loss +
MSE_loss * lambda_mul_ph + regularization_loss * cfg.lambda_l2)
tf.summary.scalar('learning_rate', lr_ph)
# only train the core branch
train_var_list = [
v for v in tf.global_variables()
if v.op.name.startswith("modality_core")
]
train_op = utils.optimize(total_loss, global_step, cfg.optimizer,
lr_ph, train_var_list)
saver = tf.train.Saver(max_to_keep=10)
summary_op = tf.summary.merge_all()
#########################################################################
# session iterator for session sampling
feat_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
feat2_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
feat3_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
label_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
train_data = multimodal_session_generator(
feat_paths_ph,
feat2_paths_ph,
feat3_paths_ph,
label_paths_ph,
sess_per_batch=cfg.sess_per_batch,
num_threads=2,
shuffled=False,
preprocess_func=[
model_emb.prepare_input, model_emb_sensors.prepare_input,
model_emb_segment.prepare_input
])
train_sess_iterator = train_data.make_initializable_iterator()
next_train = train_sess_iterator.get_next()
# prepare validation data
val_sess = []
val_feats = []
val_feats2 = []
val_feats3 = []
val_labels = []
val_boundaries = []
for session in val_set:
session_id = os.path.basename(session[1]).split('_')[0]
eve_batch, lab_batch, boundary = load_data_and_label(
session[0], session[-1], model_emb.prepare_input_test
) # use prepare_input_test for testing time
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_sess.extend([session_id] * eve_batch.shape[0])
val_boundaries.extend(boundary)
eve2_batch, _, _ = load_data_and_label(
session[1], session[-1], model_emb_sensors.prepare_input_test)
val_feats2.append(eve2_batch)
eve3_batch, _, _ = load_data_and_label(
session[2], session[-1], model_emb_segment.prepare_input_test)
val_feats3.append(eve3_batch)
val_feats = np.concatenate(val_feats, axis=0)
val_feats2 = np.concatenate(val_feats2, axis=0)
val_feats3 = np.concatenate(val_feats3, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
print("Shape of val_feats: ", val_feats.shape)
# generate metadata.tsv for visualize embedding
with open(os.path.join(result_dir, 'metadata_val.tsv'), 'w') as fout:
fout.write('id\tlabel\tsession_id\tstart\tend\n')
for i in range(len(val_sess)):
fout.write('{0}\t{1}\t{2}\t{3}\t{4}\n'.format(
i, val_labels[i, 0], val_sess[i], val_boundaries[i][0],
val_boundaries[i][1]))
#########################################################################
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
summary_writer = tf.summary.FileWriter(result_dir, sess.graph)
with sess.as_default():
sess.run(tf.global_variables_initializer())
print("Restoring sensors model: %s" % cfg.sensors_path)
restore_saver_sensors.restore(sess, cfg.sensors_path)
print("Restoring segment model: %s" % cfg.segment_path)
restore_saver_segment.restore(sess, cfg.segment_path)
# load pretrain model, if needed
if cfg.model_path:
print("Restoring pretrained model: %s" % cfg.model_path)
saver.restore(sess, cfg.model_path)
################## Training loop ##################
epoch = -1
while epoch < cfg.max_epochs - 1:
step = sess.run(global_step, feed_dict=None)
epoch = step // batch_per_epoch
# learning rate schedule, reference: "In defense of Triplet Loss"
if epoch < cfg.static_epochs:
learning_rate = cfg.learning_rate
else:
learning_rate = cfg.learning_rate * \
0.01**((epoch-cfg.static_epochs)/(cfg.max_epochs-cfg.static_epochs))
# prepare data for this epoch
random.shuffle(train_set)
paths = list(zip(*[iter(train_set)] * cfg.sess_per_batch))
feat_paths = [[p[0] for p in path] for path in paths]
feat2_paths = [[p[1] for p in path] for path in paths]
feat3_paths = [[p[2] for p in path] for path in paths]
label_paths = [[p[-1] for p in path] for path in paths]
sess.run(train_sess_iterator.initializer,
feed_dict={
feat_paths_ph: feat_paths,
feat2_paths_ph: feat2_paths,
feat3_paths_ph: feat3_paths,
label_paths_ph: label_paths
})
# for each epoch
batch_count = 1
while True:
try:
##################### Data loading ########################
start_time = time.time()
eve, eve_sensors, eve_segment, lab, batch_sess = sess.run(
next_train)
# for memory concern, 1000 events are used in maximum
if eve.shape[0] > 1000:
idx = np.random.permutation(eve.shape[0])[:1000]
eve = eve[idx]
eve_sensors = eve_sensors[idx]
eve_segment = eve_segment[idx]
lab = lab[idx]
batch_sess = batch_sess[idx]
load_time = time.time() - start_time
##################### Triplet selection #####################
start_time = time.time()
# for labeled sessions, use facenet sampling
eve_labeled = []
lab_labeled = []
for i in range(eve.shape[0]):
# FIXME: use decode again to get session_id str
if batch_sess[i, 0].decode() in labeled_session:
eve_labeled.append(eve[i])
lab_labeled.append(lab[i])
if len(eve_labeled): # if labeled sessions exist
eve_labeled = np.stack(eve_labeled, axis=0)
lab_labeled = np.stack(lab_labeled, axis=0)
# Get the embeddings of all events
eve_embedding = np.zeros(
(eve_labeled.shape[0], cfg.emb_dim),
dtype='float32')
for start, end in zip(
range(0, eve_labeled.shape[0],
cfg.batch_size),
range(
cfg.batch_size,
eve_labeled.shape[0] + cfg.batch_size,
cfg.batch_size)):
end = min(end, eve_labeled.shape[0])
emb = sess.run(embedding,
feed_dict={
input_ph:
eve_labeled[start:end],
dropout_ph: 1.0
})
eve_embedding[start:end] = np.copy(emb)
# Second, sample triplets within sampled sessions
all_diff = utils.all_diffs(eve_embedding,
eve_embedding)
triplet_input_idx, active_count = utils.select_triplets_facenet(
lab_labeled,
utils.cdist(all_diff, metric=cfg.metric),
cfg.triplet_per_batch,
cfg.alpha,
num_negative=cfg.num_negative)
if len(triplet_input_idx) == 0:
triplet_input = eve_labeled[triplet_input_idx]
else:
active_count = -1
# for all sessions in the batch
perm_idx = np.random.permutation(eve.shape[0])
perm_idx = perm_idx[:min(3 * (len(perm_idx) // 3), 3 *
cfg.triplet_per_batch)]
mul_input = eve[perm_idx]
if len(eve_labeled) and triplet_input_idx is not None:
triplet_input = np.concatenate(
(triplet_input, mul_input), axis=0)
else:
triplet_input = mul_input
sensors_input = eve_sensors[perm_idx]
segment_input = eve_segment[perm_idx]
##################### Start training ########################
# supervised initialization
if epoch < cfg.multimodal_epochs:
if not len(eve_labeled
): # if no labeled sessions exist
continue
err, mse_err, _, step, summ = sess.run(
[
total_loss, MSE_loss, train_op,
global_step, summary_op
],
feed_dict={
input_ph: triplet_input,
input_sensors_ph: sensors_input,
dropout_ph: cfg.keep_prob,
lambda_mul_ph: 0.0,
lr_ph: learning_rate
})
else:
print(triplet_input.shape)
err, mse_err1, mse_err2, _, step, summ = sess.run(
[
total_loss, MSE_loss_sensors,
MSE_loss_segment, train_op, global_step,
summary_op
],
feed_dict={
input_ph: triplet_input,
input_sensors_ph: sensors_input,
input_segment_ph: segment_input,
dropout_ph: cfg.keep_prob,
lambda_mul_ph: cfg.lambda_multimodal,
lr_ph: learning_rate
})
train_time = time.time() - start_time
print ("%s\tEpoch: [%d][%d/%d]\tEvent num: %d\tLoad time: %.3f\tTrain_time: %.3f\tLoss %.4f" % \
(cfg.name, epoch+1, batch_count, batch_per_epoch, eve.shape[0], load_time, train_time, err))
summary = tf.Summary(value=[
tf.Summary.Value(tag="train_loss",
simple_value=err),
tf.Summary.Value(tag="active_count",
simple_value=active_count),
tf.Summary.Value(
tag="triplet_num",
simple_value=(triplet_input.shape[0] -
sensors_input.shape[0]) // 3),
tf.Summary.Value(tag="MSE_loss_sensors",
simple_value=mse_err1),
tf.Summary.Value(tag="MSE_loss_segment",
simple_value=mse_err2)
])
summary_writer.add_summary(summary, step)
summary_writer.add_summary(summ, step)
batch_count += 1
except tf.errors.OutOfRangeError:
print("Epoch %d done!" % (epoch + 1))
break
# validation on val_set
print("Evaluating on validation set...")
val_err1, val_err2, val_embeddings, _ = sess.run(
[MSE_loss_sensors, MSE_loss_segment, embedding, set_emb],
feed_dict={
input_ph: val_feats,
input_sensors_ph: val_feats2,
input_segment_ph: val_feats3,
dropout_ph: 1.0
})
mAP, mPrec = utils.evaluate_simple(val_embeddings, val_labels)
summary = tf.Summary(value=[
tf.Summary.Value(tag="Valiation mAP", simple_value=mAP),
tf.Summary.Value(tag="Validation [email protected]",
simple_value=mPrec),
tf.Summary.Value(tag="Validation mse loss sensors",
simple_value=val_err1),
tf.Summary.Value(tag="Validation mse loss segment",
simple_value=val_err2)
])
summary_writer.add_summary(summary, step)
print("Epoch: [%d]\tmAP: %.4f\tmPrec: %.4f" %
(epoch + 1, mAP, mPrec))
# config for embedding visualization
config = projector.ProjectorConfig()
visual_embedding = config.embeddings.add()
visual_embedding.tensor_name = emb_var.name
visual_embedding.metadata_path = os.path.join(
result_dir, 'metadata_val.tsv')
projector.visualize_embeddings(summary_writer, config)
# save model
saver.save(sess,
os.path.join(result_dir, cfg.name + '.ckpt'),
global_step=step)
def main():
cfg = EvalConfig().parse()
print("Evaluate the model: {}".format(os.path.basename(cfg.model_path)))
np.random.seed(seed=cfg.seed)
test_session = cfg.test_session
test_set = prepare_dataset(cfg.feature_root, test_session, cfg.feat,
cfg.label_root)
# get the embedding
with tf.variable_scope("modality_core"):
# load backbone model
if cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
input_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model_emb.forward(input_ph, dropout_ph) # for lstm has variable scope
with tf.variable_scope("hallucination_sensors"):
sensors_emb_dim = 32
# load backbone model
if cfg.network == "convtsn":
hal_emb_sensors = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=sensors_emb_dim)
elif cfg.network == "convrtsn":
hal_emb_sensors = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=sensors_emb_dim)
else:
raise NotImplementedError
hal_emb_sensors.forward(input_ph,
dropout_ph) # for lstm has variable scope
# Core branch
if cfg.normalized:
embedding = tf.nn.l2_normalize(model_emb.hidden,
axis=-1,
epsilon=1e-10)
embedding_hal_sensors = tf.nn.l2_normalize(hal_emb_sensors.hidden,
axis=-1,
epsilon=1e-10)
else:
embedding = model_emb.hidden
embedding_hal_sensors = hal_emb_sensors.hidden
embedding_fused = tf.concat((embedding, embedding_hal_sensors), axis=1)
# Testing
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
saver = tf.train.Saver(tf.global_variables())
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load the model (note that model_path already contains snapshot number
saver.restore(sess, cfg.model_path)
duration = 0.0
eve_embeddings = []
labels = []
for i, session in enumerate(test_set):
session_id = os.path.basename(session[1]).split('_')[0]
print("{0} / {1}: {2}".format(i, len(test_set), session_id))
eve_batch, lab_batch, _ = load_data_and_label(
session[0], session[1], model_emb.prepare_input_test
) # use prepare_input_test for testing time
start_time = time.time()
emb = sess.run(embedding_fused,
feed_dict={
input_ph: eve_batch,
dropout_ph: 1.0
})
duration += time.time() - start_time
eve_embeddings.append(emb)
labels.append(lab_batch)
eve_embeddings = np.concatenate(eve_embeddings, axis=0)
labels = np.concatenate(labels, axis=0)
# evaluate the results
mAP, mAP_event, mPrec, confusion, count, recall = evaluate(
eve_embeddings, np.squeeze(labels))
mAP_macro = 0.0
for key in mAP_event:
mAP_macro += mAP_event[key]
mAP_macro /= len(list(mAP_event.keys()))
print("%d events with dim %d for evaluation, run time: %.3f." %
(labels.shape[0], eve_embeddings.shape[1], duration))
print("mAP = {:.4f}".format(mAP))
print("mAP_macro = {:.4f}".format(mAP_macro))
print("[email protected] = {:.4f}".format(mPrec))
print("Recall@1 = {:.4f}, Recall@10 = {:.4f}, Recall@100 = {:.4f}".format(
recall[0], recall[1], recall[2]))
keys = confusion['labels']
for i, key in enumerate(keys):
if key not in mAP_event:
continue
print(
"Event {0}: {1}, ratio = {2:.4f}, mAP = {3:.4f}, [email protected] = {4:.4f}"
.format(key, honda_num2labels[key],
float(count[i]) / np.sum(count), mAP_event[key],
confusion['confusion_matrix'][i, i]))
# store results
pkl.dump(
{
"mAP": mAP,
"mAP_macro": mAP_macro,
"mAP_event": mAP_event,
"mPrec": mPrec,
"confusion": confusion,
"count": count,
"recall": recall
},
open(os.path.join(os.path.dirname(cfg.model_path), "results.pkl"),
'wb'))
def main():
cfg = TrainConfig().parse()
print(cfg.name)
result_dir = os.path.join(
cfg.result_root,
cfg.name + '_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
utils.write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
train_session = cfg.train_session
train_set = prepare_multimodal_dataset(cfg.feature_root, train_session,
cfg.feat, cfg.label_root)
batch_per_epoch = len(train_set) // cfg.sess_per_batch
val_session = cfg.val_session
val_set = prepare_multimodal_dataset(
cfg.feature_root, val_session, cfg.feat,
cfg.label_root) # only have one modality in testing time
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
# load backbone model
if cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
input_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, None, None, None])
output_ph = tf.placeholder(tf.float32,
shape=(None, ) + cfg.feat_dim[cfg.feat[1]])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model_emb.forward(input_ph, dropout_ph)
hidden = model_emb.hidden
embedding = tf.nn.l2_normalize(model_emb.hidden,
axis=-1,
epsilon=1e-10)
# variable for visualizing the embeddings
emb_var = tf.Variable([0.0], name='embeddings')
set_emb = tf.assign(emb_var, embedding, validate_shape=False)
model_output = networks.OutputLayer(
n_input=cfg.emb_dim, n_output=cfg.feat_dim[cfg.feat[1]][0])
model_output.forward(tf.nn.relu(hidden), dropout_ph)
logits = model_output.logits
# MSE loss
MSE_loss = tf.losses.mean_squared_error(output_ph, logits)
regularization_loss = tf.reduce_sum(
tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES))
total_loss = MSE_loss + regularization_loss * cfg.lambda_l2
tf.summary.scalar('learning_rate', lr_ph)
train_op = utils.optimize(total_loss, global_step, cfg.optimizer,
lr_ph, tf.global_variables())
saver = tf.train.Saver(max_to_keep=10)
summary_op = tf.summary.merge_all()
#########################################################################
# session iterator for session sampling
feat_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
feat2_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
label_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
train_data = multimodal_session_generator(
feat_paths_ph,
feat2_paths_ph,
label_paths_ph,
sess_per_batch=cfg.sess_per_batch,
num_threads=2,
shuffled=False,
preprocess_func=[model_emb.prepare_input, utils.mean_pool_input])
train_sess_iterator = train_data.make_initializable_iterator()
next_train = train_sess_iterator.get_next()
# prepare validation data
val_sess = []
val_feats = []
val_feats2 = []
val_labels = []
val_boundaries = []
for session in val_set:
session_id = os.path.basename(session[1]).split('_')[0]
eve_batch, lab_batch, boundary = load_data_and_label(
session[0], session[-1], model_emb.prepare_input_test
) # use prepare_input_test for testing time
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_sess.extend([session_id] * eve_batch.shape[0])
val_boundaries.extend(boundary)
eve2_batch, _, _ = load_data_and_label(session[1], session[-1],
utils.mean_pool_input)
val_feats2.append(eve2_batch)
val_feats = np.concatenate(val_feats, axis=0)
val_feats2 = np.concatenate(val_feats2, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
print("Shape of val_feats: ", val_feats.shape)
# generate metadata.tsv for visualize embedding
with open(os.path.join(result_dir, 'metadata_val.tsv'), 'w') as fout:
fout.write('id\tlabel\tsession_id\tstart\tend\n')
for i in range(len(val_sess)):
fout.write('{0}\t{1}\t{2}\t{3}\t{4}\n'.format(
i, val_labels[i, 0], val_sess[i], val_boundaries[i][0],
val_boundaries[i][1]))
#########################################################################
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
summary_writer = tf.summary.FileWriter(result_dir, sess.graph)
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load pretrain model, if needed
if cfg.model_path:
print("Restoring pretrained model: %s" % cfg.model_path)
saver.restore(sess, cfg.model_path)
################## Training loop ##################
epoch = -1
while epoch < cfg.max_epochs - 1:
step = sess.run(global_step, feed_dict=None)
epoch = step // batch_per_epoch
# learning rate schedule, reference: "In defense of Triplet Loss"
if epoch < cfg.static_epochs:
learning_rate = cfg.learning_rate
else:
learning_rate = cfg.learning_rate * \
0.001**((epoch-cfg.static_epochs)/(cfg.max_epochs-cfg.static_epochs))
# prepare data for this epoch
random.shuffle(train_set)
paths = list(zip(*[iter(train_set)] * cfg.sess_per_batch))
feat_paths = [[p[0] for p in path] for path in paths]
feat2_paths = [[p[1] for p in path] for path in paths]
label_paths = [[p[-1] for p in path] for path in paths]
sess.run(train_sess_iterator.initializer,
feed_dict={
feat_paths_ph: feat_paths,
feat2_paths_ph: feat2_paths,
label_paths_ph: label_paths
})
# for each epoch
batch_count = 1
while True:
try:
##################### Data loading ########################
start_time = time.time()
start_time = time.time()
eve, eve2, lab = sess.run(next_train)
load_time = time.time() - start_time
##################### Start training ########################
start_time = time.time()
err, _, step, summ = sess.run(
[total_loss, train_op, global_step, summary_op],
feed_dict={
input_ph: eve,
output_ph: eve2,
dropout_ph: cfg.keep_prob,
lr_ph: learning_rate
})
train_time = time.time() - start_time
print ("%s\tEpoch: [%d][%d/%d]\tEvent num: %d\tLoad time: %.3f\tTrain_time: %.3f\tLoss %.4f" % \
(cfg.name, epoch+1, batch_count, batch_per_epoch, eve.shape[0], load_time, train_time, err))
summary = tf.Summary(value=[
tf.Summary.Value(tag="train_loss",
simple_value=err),
])
summary_writer.add_summary(summary, step)
summary_writer.add_summary(summ, step)
batch_count += 1
except tf.errors.OutOfRangeError:
print("Epoch %d done!" % (epoch + 1))
break
# validation on val_set
print("Evaluating on validation set...")
val_err, val_embeddings, val_pred, _ = sess.run(
[total_loss, embedding, logits, set_emb],
feed_dict={
input_ph: val_feats,
output_ph: val_feats2,
dropout_ph: 1.0
})
mAP, mPrec = utils.evaluate_simple(val_embeddings, val_labels)
mAP2, mPrec2 = utils.evaluate_simple(
val_pred, val_labels) # use prediction for retrieval
summary = tf.Summary(value=[
tf.Summary.Value(tag="Valiation mAP", simple_value=mAP),
tf.Summary.Value(tag="Validation [email protected]",
simple_value=mPrec),
tf.Summary.Value(tag="Validation mAP 2",
simple_value=mAP2),
tf.Summary.Value(tag="Validation [email protected] 2",
simple_value=mPrec2),
tf.Summary.Value(tag="Validation loss",
simple_value=val_err)
])
summary_writer.add_summary(summary, step)
# config for embedding visualization
config = projector.ProjectorConfig()
visual_embedding = config.embeddings.add()
visual_embedding.tensor_name = emb_var.name
visual_embedding.metadata_path = os.path.join(
result_dir, 'metadata_val.tsv')
projector.visualize_embeddings(summary_writer, config)
# save model
saver.save(sess,
os.path.join(result_dir, cfg.name + '.ckpt'),
global_step=step)
def main():
cfg = EvalConfig().parse()
print ("Evaluate the model: {}".format(os.path.basename(cfg.model_path)))
np.random.seed(seed=cfg.seed)
test_session = cfg.test_session
test_set = prepare_dataset(cfg.feature_root, test_session, cfg.feat, cfg.label_root, cfg.label_type)
# load backbone model
if cfg.network == "tsn":
model = networks.TSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "rtsn":
model = networks.RTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim, n_input=cfg.n_input)
elif cfg.network == "convtsn":
model = networks.ConvTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model = networks.ConvRTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim, n_h=cfg.n_h, n_w=cfg.n_w, n_C=cfg.n_C, n_input=cfg.n_input)
elif cfg.network == "seq2seqtsn":
model = networks.Seq2seqTSN(n_seg=cfg.num_seg, n_input=n_input, emb_dim=cfg.emb_dim, reverse=cfg.reverse)
elif cfg.network == "convbirtsn":
model = networks.ConvBiRTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
# get the embedding
if cfg.feat == "sensors" or cfg.feat == "segment":
input_ph = tf.placeholder(tf.float32, shape=[None, cfg.num_seg, None])
elif cfg.feat == "resnet" or cfg.feat == "segment_down":
input_ph = tf.placeholder(tf.float32, shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model.forward(input_ph, dropout_ph)
embedding = tf.nn.l2_normalize(model.hidden, axis=1, epsilon=1e-10, name='embedding')
# Testing
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
# restore variables
var_list = {}
for v in tf.global_variables():
var_list[cfg.variable_name+v.op.name] = v
saver = tf.train.Saver(var_list)
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load the model (note that model_path already contains snapshot number
saver.restore(sess, cfg.model_path)
duration = 0.0
eve_embeddings = []
labels = []
for i, session in enumerate(test_set):
session_id = os.path.basename(session[1]).split('_')[0]
print ("{0} / {1}: {2}".format(i, len(test_set), session_id))
# eve_batch, lab_batch, _ = load_data_and_label(session[0], session[1], mean_pool_input, transfer=cfg.transfer) # use prepare_input_test for testing time
eve_batch, lab_batch, _ = load_data_and_label(session[0], session[1], model.prepare_input_test, transfer=cfg.transfer) # use prepare_input_test for testing time
start_time = time.time()
emb = sess.run(embedding, feed_dict={input_ph: eve_batch, dropout_ph: 1.0})
# emb = eve_batch
duration += time.time() - start_time
eve_embeddings.append(emb)
labels.append(lab_batch)
eve_embeddings = np.concatenate(eve_embeddings, axis=0)
labels = np.concatenate(labels, axis=0)
# evaluate the results
mAP, mAP_event, mPrec, confusion, count, recall = evaluate(eve_embeddings, np.squeeze(labels))
mAP_macro = 0.0
for key in mAP_event:
mAP_macro += mAP_event[key]
mAP_macro /= len(list(mAP_event.keys()))
print ("%d events with dim %d for evaluation, run time: %.3f." % (labels.shape[0], eve_embeddings.shape[1], duration))
print ("mAP = {:.4f}".format(mAP))
print ("mAP_macro = {:.4f}".format(mAP_macro))
print ("[email protected] = {:.4f}".format(mPrec))
print ("Recall@1 = {:.4f}".format(recall[0]))
print ("Recall@2 = {:.4f}".format(recall[1]))
print ("Recall@4 = {:.4f}".format(recall[2]))
print ("Recall@8 = {:.4f}".format(recall[3]))
print ("Recall@16 = {:.4f}".format(recall[4]))
print ("Recall@32 = {:.4f}".format(recall[5]))
if cfg.label_type == 'goal':
num2labels = honda_num2labels
elif cfg.label_type == 'stimuli':
num2labels = stimuli_num2labels
keys = confusion['labels']
for i, key in enumerate(keys):
if key not in mAP_event:
continue
print ("Event {0}: {1}, ratio = {2:.4f}, mAP = {3:.4f}, [email protected] = {4:.4f}".format(
key,
num2labels[key],
float(count[i]) / np.sum(count),
mAP_event[key],
confusion['confusion_matrix'][i, i]))
# store results
pkl.dump({"mAP": mAP,
"mAP_macro": mAP_macro,
"mAP_event": mAP_event,
"mPrec": mPrec,
"confusion": confusion,
"count": count,
"recall": recall},
open(os.path.join(os.path.dirname(cfg.model_path), "results.pkl"), 'wb'))
def main():
cfg = TrainConfig().parse()
print (cfg.name)
np.random.seed(seed=cfg.seed)
# prepare dataset
val_session = cfg.val_session
val_set = prepare_dataset(cfg.feature_root, val_session, cfg.feat, cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
# load backbone model
if cfg.network == "tsn":
model_emb = networks.TSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "rtsn":
model_emb = networks.RTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim, n_input=cfg.n_input)
elif cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim, n_h=cfg.n_h, n_w=cfg.n_w, n_C=cfg.n_C, n_input=cfg.n_input)
elif cfg.network == "convbirtsn":
model_emb = networks.ConvBiRTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
model_ver = networks.PDDM(n_input=cfg.emb_dim)
# get the embedding
if cfg.feat == "sensors" or cfg.feat == "segment":
input_ph = tf.placeholder(tf.float32, shape=[None, cfg.num_seg, None])
elif cfg.feat == "resnet" or cfg.feat == "segment_down":
input_ph = tf.placeholder(tf.float32, shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model_emb.forward(input_ph, dropout_ph)
if cfg.normalized:
embedding = tf.nn.l2_normalize(model_emb.hidden, axis=-1, epsilon=1e-10)
else:
embedding = model_emb.hidden
# split the embedding
emb_A = embedding[:(tf.shape(embedding)[0]//2)]
emb_B = embedding[(tf.shape(embedding)[0]//2):]
model_ver.forward(tf.stack((emb_A, emb_B), axis=1))
pddm = model_ver.prob
restore_saver = tf.train.Saver()
# prepare validation data
val_sess = []
val_feats = []
val_labels = []
val_boundaries = []
for session in val_set:
session_id = os.path.basename(session[1]).split('_')[0]
eve_batch, lab_batch, boundary = load_data_and_label(session[0], session[-1], model_emb.prepare_input_test) # use prepare_input_test for testing time
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_sess.extend([session_id]*eve_batch.shape[0])
val_boundaries.extend(boundary)
val_feats = np.concatenate(val_feats, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
print ("Shape of val_feats: ", val_feats.shape)
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
with sess.as_default():
sess.run(tf.global_variables_initializer())
print ("Restoring pretrained model: %s" % cfg.model_path)
restore_saver.restore(sess, cfg.model_path)
fout_fp = open(os.path.join(os.path.dirname(cfg.model_path), 'val_fp.txt'), 'w')
fout_fn = open(os.path.join(os.path.dirname(cfg.model_path), 'val_fn.txt'), 'w')
fout_fp.write('id_A\tid_B\tlabel_A\tlabel_B\tprob_0\tprob_1\n')
fout_fn.write('id_A\tid_B\tlabel_A\tlabel_B\tprob_0\tprob_1\n')
count = 0
count_high = 0 # high confidence (0.9)
count_fp = 0
count_fn = 0
for i in range(val_feats.shape[0]):
print ("%d/%d" % (i,val_feats.shape[0]))
if val_labels[i] == 0:
continue
A_input = np.tile(val_feats[i], (val_feats.shape[0]-i,1,1))
AB_input = np.vstack((A_input, val_feats[i:])) # concatenate along axis 0
temp_prob = sess.run(pddm, feed_dict={input_ph: AB_input, dropout_ph:1.0})
count += temp_prob.shape[0]
threshold = 0.8
for j in range(temp_prob.shape[0]):
if temp_prob[j, 0] > threshold or temp_prob[j, 1] > threshold:
count_high += 1
if val_labels[i] == val_labels[i+j] and temp_prob[j, 0]>threshold:
count_fn += 1
fout_fn.write("{}\t{}\t{}\t{}\t{:.4f}\t{:.4f}\n".format(i,i+j,val_labels[i,0],val_labels[i+j,0],temp_prob[j,0],temp_prob[j,1]))
elif val_labels[i] != val_labels[i+j] and temp_prob[j,1] > threshold:
count_fp += 1
fout_fp.write("{}\t{}\t{}\t{}\t{:.4f}\t{:.4f}\n".format(i,i+j,val_labels[i,0],val_labels[i+j,0],temp_prob[j,0],temp_prob[j,1]))
fout_fp.close()
fout_fn.close()
print ("High confidence (%f) pairs ratio: %.4f" % (threshold, float(count_high)/count))
print ("Consistent pairs ratio: %.4f" % (float(count_high-count_fp-count_fn)/count_high))
print ("False positive pairs ratio: %.4f" % (float(count_fp)/count_high))
print ("False negative pairs ratio: %.4f" % (float(count_fn)/count_high))
def main():
cfg = TrainConfig().parse()
print(cfg.name)
result_dir = os.path.join(
cfg.result_root,
cfg.name + '_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
utils.write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
train_session = cfg.train_session
train_set = prepare_dataset(cfg.feature_root, train_session, cfg.feat,
cfg.label_root)
train_set = train_set[:cfg.label_num]
batch_per_epoch = len(train_set) // cfg.sess_per_batch
val_session = cfg.val_session
val_set = prepare_dataset(cfg.feature_root, val_session, cfg.feat,
cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
# load backbone model
if cfg.network == "tsn":
model_emb = networks.TSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "rtsn":
model_emb = networks.RTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim,
n_input=cfg.n_input)
elif cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim,
n_h=cfg.n_h,
n_w=cfg.n_w,
n_C=cfg.n_C,
n_input=cfg.n_input)
elif cfg.network == "convbirtsn":
model_emb = networks.ConvBiRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
model_ver = networks.PDDM(n_input=cfg.emb_dim)
# get the embedding
if cfg.feat == "sensors" or cfg.feat == "segment":
input_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, None])
elif cfg.feat == "resnet" or cfg.feat == "segment_down":
input_ph = tf.placeholder(
tf.float32, shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model_emb.forward(input_ph, dropout_ph)
if cfg.normalized:
embedding = tf.nn.l2_normalize(model_emb.hidden,
axis=-1,
epsilon=1e-10)
else:
embedding = model_emb.hidden
# variable for visualizing the embeddings
emb_var = tf.Variable([0.0], name='embeddings')
set_emb = tf.assign(emb_var, embedding, validate_shape=False)
# calculated for monitoring all-pair embedding distance
diffs = utils.all_diffs_tf(embedding, embedding)
all_dist = utils.cdist_tf(diffs)
tf.summary.histogram('embedding_dists', all_dist)
# split embedding into anchor, positive and negative and calculate triplet loss
anchor, positive, negative = tf.unstack(
tf.reshape(embedding, [-1, 3, cfg.emb_dim]), 3, 1)
metric_loss = networks.triplet_loss(anchor, positive, negative,
cfg.alpha)
model_ver.forward(tf.stack((anchor, positive), axis=1))
pddm_ap = model_ver.prob[:, 0]
model_ver.forward(tf.stack((anchor, negative), axis=1))
pddm_an = model_ver.prob[:, 0]
pddm_loss = tf.reduce_mean(
tf.maximum(tf.add(tf.subtract(pddm_ap, pddm_an), 0.6), 0.0), 0)
regularization_loss = tf.reduce_sum(
tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES))
total_loss = pddm_loss + 0.5 * metric_loss + regularization_loss * cfg.lambda_l2
tf.summary.scalar('learning_rate', lr_ph)
train_op = utils.optimize(total_loss, global_step, cfg.optimizer,
lr_ph, tf.global_variables())
saver = tf.train.Saver(max_to_keep=10)
summary_op = tf.summary.merge_all()
# session iterator for session sampling
feat_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
label_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
train_data = session_generator(feat_paths_ph,
label_paths_ph,
sess_per_batch=cfg.sess_per_batch,
num_threads=2,
shuffled=False,
preprocess_func=model_emb.prepare_input)
train_sess_iterator = train_data.make_initializable_iterator()
next_train = train_sess_iterator.get_next()
# prepare validation data
val_feats = []
val_labels = []
for session in val_set:
eve_batch, lab_batch, _ = load_data_and_label(
session[0], session[1], model_emb.prepare_input_test
) # use prepare_input_test for testing time
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_feats = np.concatenate(val_feats, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
print("Shape of val_feats: ", val_feats.shape)
# generate metadata.tsv for visualize embedding
with open(os.path.join(result_dir, 'metadata_val.tsv'), 'w') as fout:
for v in val_labels:
fout.write('%d\n' % int(v))
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
summary_writer = tf.summary.FileWriter(result_dir, sess.graph)
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load pretrain model, if needed
if cfg.model_path:
print("Restoring pretrained model: %s" % cfg.model_path)
saver.restore(sess, cfg.model_path)
################## Training loop ##################
epoch = -1
while epoch < cfg.max_epochs - 1:
step = sess.run(global_step, feed_dict=None)
epoch = step // batch_per_epoch
# learning rate schedule, reference: "In defense of Triplet Loss"
if epoch < cfg.static_epochs:
learning_rate = cfg.learning_rate
else:
learning_rate = cfg.learning_rate * \
0.001**((epoch-cfg.static_epochs)/(cfg.max_epochs-cfg.static_epochs))
# prepare data for this epoch
random.shuffle(train_set)
feat_paths = [path[0] for path in train_set]
label_paths = [path[1] for path in train_set]
# reshape a list to list of list
# interesting hacky code from: https://stackoverflow.com/questions/10124751/convert-a-flat-list-to-list-of-list-in-python
feat_paths = list(zip(*[iter(feat_paths)] *
cfg.sess_per_batch))
label_paths = list(
zip(*[iter(label_paths)] * cfg.sess_per_batch))
sess.run(train_sess_iterator.initializer,
feed_dict={
feat_paths_ph: feat_paths,
label_paths_ph: label_paths
})
# for each epoch
batch_count = 1
while True:
try:
# Hierarchical sampling (same as fast rcnn)
start_time_select = time.time()
# First, sample sessions for a batch
eve, se, lab = sess.run(next_train)
select_time1 = time.time() - start_time_select
# Get the similarity of all events
sim_prob = np.zeros((eve.shape[0], eve.shape[0]),
dtype='float32') * np.nan
comb = list(
itertools.combinations(range(eve.shape[0]), 2))
for start, end in zip(
range(0, len(comb), cfg.batch_size),
range(cfg.batch_size,
len(comb) + cfg.batch_size,
cfg.batch_size)):
end = min(end, len(comb))
comb_idx = []
for c in comb[start:end]:
comb_idx.extend([c[0], c[1], c[1]])
emb = sess.run(pddm_ap,
feed_dict={
input_ph: eve[comb_idx],
dropout_ph: 1.0
})
for i in range(emb.shape[0]):
sim_prob[comb[start + i][0],
comb[start + i][1]] = emb[i]
sim_prob[comb[start + i][1],
comb[start + i][0]] = emb[i]
# Second, sample triplets within sampled sessions
triplet_selected, active_count = utils.select_triplets_facenet(
lab, sim_prob, cfg.triplet_per_batch, cfg.alpha)
select_time2 = time.time(
) - start_time_select - select_time1
start_time_train = time.time()
triplet_input_idx = [
idx for triplet in triplet_selected
for idx in triplet
]
triplet_input = eve[triplet_input_idx]
# perform training on the selected triplets
err, _, step, summ = sess.run(
[total_loss, train_op, global_step, summary_op],
feed_dict={
input_ph: triplet_input,
dropout_ph: cfg.keep_prob,
lr_ph: learning_rate
})
train_time = time.time() - start_time_train
print ("%s\tEpoch: [%d][%d/%d]\tEvent num: %d\tTriplet num: %d\tSelect_time1: %.3f\tSelect_time2: %.3f\tTrain_time: %.3f\tLoss %.4f" % \
(cfg.name, epoch+1, batch_count, batch_per_epoch, eve.shape[0], triplet_input.shape[0]//3, select_time1, select_time2, train_time, err))
summary = tf.Summary(value=[
tf.Summary.Value(tag="train_loss",
simple_value=err),
tf.Summary.Value(tag="active_count",
simple_value=active_count),
tf.Summary.Value(
tag="triplet_num",
simple_value=triplet_input.shape[0] // 3)
])
summary_writer.add_summary(summary, step)
summary_writer.add_summary(summ, step)
batch_count += 1
except tf.errors.OutOfRangeError:
print("Epoch %d done!" % (epoch + 1))
break
# validation on val_set
print("Evaluating on validation set...")
val_embeddings, _ = sess.run([embedding, set_emb],
feed_dict={
input_ph: val_feats,
dropout_ph: 1.0
})
mAP, mPrec = utils.evaluate_simple(val_embeddings, val_labels)
val_sim_prob = np.zeros(
(val_feats.shape[0], val_feats.shape[0]),
dtype='float32') * np.nan
val_comb = list(
itertools.combinations(range(val_feats.shape[0]), 2))
for start, end in zip(
range(0, len(val_comb), cfg.batch_size),
range(cfg.batch_size,
len(val_comb) + cfg.batch_size, cfg.batch_size)):
end = min(end, len(val_comb))
comb_idx = []
for c in val_comb[start:end]:
comb_idx.extend([c[0], c[1], c[1]])
emb = sess.run(pddm_ap,
feed_dict={
input_ph: val_feats[comb_idx],
dropout_ph: 1.0
})
for i in range(emb.shape[0]):
val_sim_prob[val_comb[start + i][0],
val_comb[start + i][1]] = emb[i]
val_sim_prob[val_comb[start + i][1],
val_comb[start + i][0]] = emb[i]
mAP_PDDM = 0.0
count = 0
for i in range(val_labels.shape[0]):
if val_labels[i] > 0:
temp_labels = np.delete(val_labels, i, 0)
temp = np.delete(val_sim_prob, i, 1)
mAP_PDDM += average_precision_score(
np.squeeze(temp_labels == val_labels[i, 0]),
np.squeeze(1 - temp[i]))
count += 1
mAP_PDDM /= count
summary = tf.Summary(value=[
tf.Summary.Value(tag="Validation mAP", simple_value=mAP),
tf.Summary.Value(tag="Validation mAP_PDDM",
simple_value=mAP_PDDM),
tf.Summary.Value(tag="Validation [email protected]",
simple_value=mPrec)
])
summary_writer.add_summary(summary, step)
print("Epoch: [%d]\tmAP: %.4f\tmPrec: %.4f\tmAP_PDDM: %.4f" %
(epoch + 1, mAP, mPrec, mAP_PDDM))
# config for embedding visualization
config = projector.ProjectorConfig()
visual_embedding = config.embeddings.add()
visual_embedding.tensor_name = emb_var.name
visual_embedding.metadata_path = os.path.join(
result_dir, 'metadata_val.tsv')
projector.visualize_embeddings(summary_writer, config)
# save model
saver.save(sess,
os.path.join(result_dir, cfg.name + '.ckpt'),
global_step=step)
def main():
cfg = EvalConfig().parse()
print("Evaluate the model: {}".format(os.path.basename(cfg.model_path)))
np.random.seed(seed=cfg.seed)
all_session = cfg.train_session
all_set = prepare_dataset(cfg.feature_root, all_session, cfg.feat,
cfg.label_root)
n_input = cfg.feat_dim[cfg.feat]
########################### Extract features ###########################
# load backbone model
model = networks.Seq2seqTSN(n_seg=cfg.num_seg,
n_input=n_input,
emb_dim=cfg.emb_dim,
reverse=cfg.reverse)
# get the embedding
input_ph = tf.placeholder(tf.float32, shape=[None, cfg.num_seg, n_input])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model.forward(input_ph, dropout_ph)
if cfg.normalized:
embedding = tf.nn.l2_normalize(model.hidden, axis=-1, epsilon=1e-10)
else:
embedding = model.hidden
# Testing
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
saver = tf.train.Saver()
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load the model (note that model_path already contains snapshot number
saver.restore(sess, cfg.model_path)
eve_embeddings = []
sessions = []
eids_all = []
for i, session in enumerate(all_set):
session_id = os.path.basename(session[1]).split('_')[0]
print("{0} / {1}: {2}".format(i, len(all_set), session_id))
eve_batch, _, boundary = load_data_and_label(
session[0], session[1], model.prepare_input_test)
for start, end in zip(
range(0, eve_batch.shape[0], cfg.batch_size),
range(cfg.batch_size, eve_batch.shape[0] + cfg.batch_size,
cfg.batch_size)):
end = min(end, eve_batch.shape[0])
emb = sess.run(embedding,
feed_dict={
input_ph: eve_batch[start:end],
dropout_ph: 1.0
})
eve_embeddings.append(emb)
# for tracking data sources
sessions.extend([session_id] * eve_batch.shape[0])
eids_all.extend(boundary)
eve_embeddings = np.concatenate(eve_embeddings, axis=0)
print("Feature extraction done!")
########################### Clustering ###########################
NUM_CLUSTER = 20 # k for k-means
NUM_HIGH = 100 # number of high-confidence points used
kmeans = KMeans(n_clusters=NUM_CLUSTER, n_init=20)
print("Fitting clustering... {} points with dim {}".format(
eve_embeddings.shape[0], eve_embeddings.shape[1]))
start_time = time.time()
kmeans.fit(eve_embeddings)
duration = time.time() - start_time
print("Done. %.3f seconds used" % (duration))
################### Get high-confidence points ##########################
cluster_idx = kmeans.predict(eve_embeddings)
cluster_dist = kmeans.transform(eve_embeddings)
feat = []
label = []
ses = []
eids = []
for i in range(NUM_CLUSTER):
idx = np.where(cluster_idx == i)[0]
dist = cluster_dist[idx, i]
sorted_idx = np.argsort(dist)
idx = idx[sorted_idx[:NUM_HIGH]]
temp = eve_embeddings[idx]
feat.append(temp)
label.append(i * np.ones((temp.shape[0], 1), dtype='int32'))
for j in idx:
ses.append(sessions[j])
eids.append(eids_all[j])
print("Label {} with {} points".format(i, temp.shape[0]))
feat = np.concatenate(feat, axis=0)
label = np.concatenate(label, axis=0)
#########################################################################
# save results
result_dir = os.path.join(
os.path.dirname(cfg.model_path),
'kmeans_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
pkl.dump(kmeans, open(os.path.join(result_dir, 'kmeans_model.pkl'), 'wb'))
pkl.dump(
{
'feats': feat,
'labels': label,
'sessions': ses,
'boundaries': eids
}, open(os.path.join(result_dir, 'train_data.pkl'), 'wb'))
############################ Feature for validation #################################
val_session = cfg.val_session
val_set = prepare_dataset(cfg.feature_root, val_session, cfg.feat,
cfg.label_root)
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load the model (note that model_path already contains snapshot number
saver.restore(sess, cfg.model_path)
eve_embeddings = []
sessions = []
eids_all = []
for i, session in enumerate(val_set):
session_id = os.path.basename(session[1]).split('_')[0]
print("{0} / {1}: {2}".format(i, len(all_set), session_id))
eve_batch, _, boundary = load_data_and_label(
session[0], session[1], model.prepare_input_test)
for start, end in zip(
range(0, eve_batch.shape[0], cfg.batch_size),
range(cfg.batch_size, eve_batch.shape[0] + cfg.batch_size,
cfg.batch_size)):
end = min(end, eve_batch.shape[0])
emb = sess.run(embedding,
feed_dict={
input_ph: eve_batch[start:end],
dropout_ph: 1.0
})
eve_embeddings.append(emb)
# for tracking data sources
sessions.extend([session_id] * eve_batch.shape[0])
eids_all.extend(boundary)
eve_embeddings = np.concatenate(eve_embeddings, axis=0)
cluster_idx = kmeans.predict(eve_embeddings)
cluster_dist = kmeans.transform(eve_embeddings)
NUM_HIGH = 20
feat = []
label = []
ses = []
eids = []
for i in range(NUM_CLUSTER):
idx = np.where(cluster_idx == i)[0]
dist = cluster_dist[idx, i]
sorted_idx = np.argsort(dist)
idx = idx[sorted_idx[:NUM_HIGH]]
temp = eve_embeddings[idx]
feat.append(temp)
label.append(i * np.ones((temp.shape[0], 1), dtype='int32'))
for j in idx:
ses.append(sessions[j])
eids.append(eids_all[j])
print("Label {} with {} points".format(i, temp.shape[0]))
feat = np.concatenate(feat, axis=0)
label = np.concatenate(label, axis=0)
pkl.dump(
{
'feats': feat,
'labels': label,
'sessions': ses,
'boundaries': eids
}, open(os.path.join(result_dir, 'val_data.pkl'), 'wb'))
def main():
cfg = EvalConfig().parse()
np.random.seed(seed=cfg.seed)
test_session = cfg.test_session
test_set = prepare_dataset(cfg.feature_root, test_session, cfg.feat, cfg.label_root)
####################### Load models here ########################
input_ph = tf.placeholder(tf.float32, shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
with tf.variable_scope("modality_core"):
# load backbone model
if cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
model_emb.forward(input_ph, dropout_ph) # for lstm has variable scope
var_list = {}
for v in tf.global_variables():
if v.op.name.startswith("modality_core"):
var_list[v.op.name.replace("modality_core/","")] = v
restore_saver = tf.train.Saver(var_list)
with tf.variable_scope("modality_sensors"):
sensors_emb_dim = 128
if cfg.network == "convtsn":
model_emb_sensors = networks.ConvTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb_sensors = networks.ConvRTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
model_output_sensors = networks.OutputLayer(n_input=sensors_emb_dim, n_output=8)
model_emb_sensors.forward(input_ph, dropout_ph)
model_output_sensors.forward(tf.nn.relu(model_emb_sensors.hidden), dropout_ph)
var_list = {}
for v in tf.global_variables():
if v.op.name.startswith("modality_sensors"):
var_list[v.op.name.replace("modality_sensors/","")] = v
restore_saver_sensors = tf.train.Saver(var_list)
############################# Forward Pass #############################
# get embeddings
embedding = tf.nn.l2_normalize(model_emb.hidden, axis=-1, epsilon=1e-10)
if cfg.use_output:
if cfg.normalized:
embedding_sensors = tf.nn.l2_normalize(model_output_sensors.logits)
else:
embedding_sensors = model_output_sensors.logits
else:
embedding_sensors = tf.nn.l2_normalize(model_emb_sensors.hidden, axis=-1, epsilon=1e-10)
#########################################################################
# Testing
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
saver = tf.train.Saver()
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load the model (note that model_path already contains snapshot number
restore_saver.restore(sess, cfg.model_path)
print ("Restoring the model: {}".format(os.path.basename(cfg.model_path)))
restore_saver_sensors.restore(sess, cfg.sensors_path)
print ("Restoring the model: {}".format(os.path.basename(cfg.sensors_path)))
eve_embeddings = []
sensors_embeddings = []
labels = []
for i, session in enumerate(test_set):
session_id = os.path.basename(session[1]).split('_')[0]
print ("{0} / {1}: {2}".format(i, len(test_set), session_id))
eve_batch, lab_batch, _ = load_data_and_label(session[0], session[1], model_emb.prepare_input_test) # use prepare_input_test for testing time
emb, emb_s = sess.run([embedding, embedding_sensors],
feed_dict={input_ph: eve_batch, dropout_ph: 1.0})
eve_embeddings.append(emb)
sensors_embeddings.append(emb_s)
labels.append(lab_batch)
eve_embeddings = np.concatenate(eve_embeddings, axis=0)
sensors_embeddings = np.concatenate(sensors_embeddings, axis=0)
labels = np.concatenate(labels, axis=0)
# evaluate the results
fused_embeddings = np.concatenate((eve_embeddings, sensors_embeddings), axis=1)
mAP, mAP_event, mPrec, confusion, count, recall = evaluate(fused_embeddings, np.squeeze(labels))
mAP_macro = 0.0
for key in mAP_event:
mAP_macro += mAP_event[key]
mAP_macro /= len(list(mAP_event.keys()))
print ("%d events with dim %d for evaluation." % (labels.shape[0], fused_embeddings.shape[1]))
print ("mAP = {}".format(mAP))
print ("mAP_macro = {}".format(mAP_macro))
print ("[email protected] = {}".format(mPrec))
print ("Recall@1 = {}, Recall@10 = {}, Recall@100 = {}".format(recall[0], recall[1], recall[2]))
keys = confusion['labels']
for i, key in enumerate(keys):
if key not in mAP_event:
continue
print ("Event {0}: {1}, ratio = {2}, mAP = {3}, [email protected] = {4}".format(
key,
honda_num2labels[key],
float(count[i]) / np.sum(count),
mAP_event[key],
confusion['confusion_matrix'][i, i]))
# store results
pkl.dump({"mAP": mAP,
"mAP_macro": mAP_macro,
"mAP_event": mAP_event,
"mPrec": mPrec,
"confusion": confusion,
"count": count,
"recall": recall},
open(os.path.join(os.path.dirname(cfg.model_path), "results.pkl"), 'wb'))
def main():
cfg = TrainConfig().parse()
print(cfg.name)
result_dir = os.path.join(
cfg.result_root,
cfg.name + '_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
utils.write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
train_session = cfg.train_session
train_set = prepare_dataset(cfg.feature_root, train_session, cfg.feat,
cfg.label_root)
batch_per_epoch = len(train_set) // cfg.sess_per_batch
val_session = cfg.val_session[:3]
val_set = prepare_dataset(cfg.feature_root, val_session, cfg.feat,
cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
# subtract global_step by 1 if needed (for hard negative mining, keep global_step unchanged)
subtract_global_step_op = tf.assign(global_step, global_step - 1)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
# load backbone model
if cfg.network == "tsn":
model_emb = networks.TSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "rtsn":
model_emb = networks.RTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
model_ver = networks.PairSim(n_input=cfg.emb_dim)
# get the embedding
if cfg.feat == "sensors":
input_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, None])
elif cfg.feat == "resnet":
input_ph = tf.placeholder(
tf.float32, shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
label_ph = tf.placeholder(tf.int32, shape=[None])
model_emb.forward(input_ph, dropout_ph)
embedding = model_emb.hidden
# split embedding into A and B
emb_A, emb_B = tf.unstack(tf.reshape(embedding, [-1, 2, cfg.emb_dim]),
2, 1)
pairs = tf.stack([emb_A, emb_B], axis=1)
model_ver.forward(pairs, dropout_ph)
logits = model_ver.logits
prob = model_ver.prob
pred = tf.argmax(logits, -1)
ver_loss = tf.reduce_mean(
tf.nn.sparse_softmax_cross_entropy_with_logits(labels=label_ph,
logits=logits))
regularization_loss = tf.reduce_sum(
tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES))
total_loss = ver_loss + regularization_loss * cfg.lambda_l2
tf.summary.scalar('learning_rate', lr_ph)
train_op = utils.optimize(total_loss, global_step, cfg.optimizer,
lr_ph, tf.global_variables())
saver = tf.train.Saver(max_to_keep=10)
summary_op = tf.summary.merge_all()
# session iterator for session sampling
feat_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
label_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
train_data = session_generator(feat_paths_ph,
label_paths_ph,
sess_per_batch=cfg.sess_per_batch,
num_threads=2,
shuffled=False,
preprocess_func=model_emb.prepare_input)
train_sess_iterator = train_data.make_initializable_iterator()
next_train = train_sess_iterator.get_next()
# prepare validation data
val_sess = []
val_feats = []
val_labels = []
val_boundaries = []
for session in val_set:
session_id = os.path.basename(session[1]).split('_')[0]
eve_batch, lab_batch, boundary = load_data_and_label(
session[0], session[1], model_emb.prepare_input_test
) # use prepare_input_test for testing time
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_sess.extend([session_id] * eve_batch.shape[0])
val_boundaries.extend(boundary)
val_feats = np.concatenate(val_feats, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
# generate metadata.tsv for visualize embedding
with open(os.path.join(result_dir, 'metadata_val.tsv'), 'w') as fout:
fout.write('id\tlabel\tsession_id\tstart\tend\n')
for i in range(len(val_sess)):
fout.write('{0}\t{1}\t{2}\t{3}\t{4}\n'.format(
i, val_labels[i, 0], val_sess[i], val_boundaries[i][0],
val_boundaries[i][1]))
val_idx, val_labels = random_pairs(val_labels, 1000000, test=True)
val_feats = val_feats[val_idx]
val_labels = np.asarray(val_labels, dtype='int32')
print("Shape of val_feats: ", val_feats.shape)
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
summary_writer = tf.summary.FileWriter(result_dir, sess.graph)
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load pretrain model, if needed
if cfg.model_path:
print("Restoring pretrained model: %s" % cfg.model_path)
saver.restore(sess, cfg.model_path)
################## Training loop ##################
epoch = -1
while epoch < cfg.max_epochs - 1:
step = sess.run(global_step, feed_dict=None)
epoch = step // batch_per_epoch
# learning rate schedule, reference: "In defense of Triplet Loss"
if epoch < cfg.static_epochs:
learning_rate = cfg.learning_rate
else:
learning_rate = cfg.learning_rate * \
0.001**((epoch-cfg.static_epochs)/(cfg.max_epochs-cfg.static_epochs))
# prepare data for this epoch
random.shuffle(train_set)
feat_paths = [path[0] for path in train_set]
label_paths = [path[1] for path in train_set]
# reshape a list to list of list
# interesting hacky code from: https://stackoverflow.com/questions/10124751/convert-a-flat-list-to-list-of-list-in-python
feat_paths = list(zip(*[iter(feat_paths)] *
cfg.sess_per_batch))
label_paths = list(
zip(*[iter(label_paths)] * cfg.sess_per_batch))
sess.run(train_sess_iterator.initializer,
feed_dict={
feat_paths_ph: feat_paths,
label_paths_ph: label_paths
})
# for each epoch
batch_count = 1
while True:
try:
# Hierarchical sampling (same as fast rcnn)
start_time_select = time.time()
# First, sample sessions for a batch
eve, se, lab = sess.run(next_train)
select_time1 = time.time() - start_time_select
# select pairs for training
pair_idx, train_labels = random_pairs(
lab, cfg.batch_size, cfg.num_negative)
train_input = eve[pair_idx]
train_labels = np.asarray(train_labels, dtype='int32')
select_time2 = time.time(
) - start_time_select - select_time1
start_time_train = time.time()
# perform training on the selected pairs
err, y_pred, y_prob, _, step, summ = sess.run(
[
total_loss, pred, prob, train_op, global_step,
summary_op
],
feed_dict={
input_ph: train_input,
label_ph: train_labels,
dropout_ph: cfg.keep_prob,
lr_ph: learning_rate
})
acc = accuracy_score(train_labels, y_pred)
negative_count = 0
if epoch >= cfg.negative_epochs:
hard_idx, hard_labels, negative_count = hard_pairs(
train_labels, y_prob, 0.5)
if negative_count > 0:
hard_input = train_input[hard_idx]
hard_labels = np.asarray(hard_labels,
dtype='int32')
step = sess.run(subtract_global_step_op)
hard_err, y_pred, _, step = sess.run(
[total_loss, pred, train_op, global_step],
feed_dict={
input_ph: hard_input,
label_ph: hard_labels,
dropout_ph: cfg.keep_prob,
lr_ph: learning_rate
})
train_time = time.time() - start_time_train
print ("%s\tEpoch: [%d][%d/%d]\tEvent num: %d\tSelect_time1: %.3f\tSelect_time2: %.3f\tTrain_time: %.3f\tLoss: %.4f" % \
(cfg.name, epoch+1, batch_count, batch_per_epoch, eve.shape[0], select_time1, select_time2, train_time, err))
summary = tf.Summary(value=[
tf.Summary.Value(tag="train_loss",
simple_value=err),
tf.Summary.Value(tag="acc", simple_value=acc),
tf.Summary.Value(tag="negative_count",
simple_value=negative_count)
])
summary_writer.add_summary(summary, step)
summary_writer.add_summary(summ, step)
batch_count += 1
except tf.errors.OutOfRangeError:
print("Epoch %d done!" % (epoch + 1))
break
# validation on val_set
print("Evaluating on validation set...")
val_err, val_pred, val_prob = sess.run(
[total_loss, pred, prob],
feed_dict={
input_ph: val_feats,
label_ph: val_labels,
dropout_ph: 1.0
})
val_acc = accuracy_score(val_labels, val_pred)
summary = tf.Summary(value=[
tf.Summary.Value(tag="Valiation acc",
simple_value=val_acc),
tf.Summary.Value(tag="Validation loss",
simple_value=val_err)
])
summary_writer.add_summary(summary, step)
# save model
saver.save(sess,
os.path.join(result_dir, cfg.name + '.ckpt'),
global_step=step)
# print log for analysis
with open(os.path.join(result_dir, 'val_results.txt'), 'w') as fout:
fout.write("acc = %.4f\n" % val_acc)
fout.write("label\tprob_0\tprob_1\tA_idx\tB_idx\n")
for i in range(val_prob.shape[0]):
fout.write("%d\t%.4f\t%.4f\t%d\t%d\n" %
(val_labels[i], val_prob[i, 0], val_prob[i, 1],
val_idx[2 * i], val_idx[2 * i + 1]))
def main():
# Load configurations and write to config.txt
cfg = TrainConfig().parse()
print(cfg.name)
result_dir = os.path.join(
cfg.result_root,
cfg.name + '_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
utils.write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
train_session = cfg.train_session
train_set = prepare_dataset(cfg.feature_root, train_session, cfg.feat,
cfg.label_root)
train_set = train_set[:cfg.label_num]
batch_per_epoch = len(train_set) // cfg.sess_per_batch
val_session = cfg.val_session
val_set = prepare_dataset(cfg.feature_root, val_session, cfg.feat,
cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
label_ph = tf.placeholder(tf.int32, shape=[None], name="label")
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
####################### Define model here ########################
# Load embedding model
if cfg.network == "tsn":
model_emb = networks.TSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "rtsn":
model_emb = networks.RTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim,
n_h=cfg.n_h,
n_w=cfg.n_w,
n_C=cfg.n_C,
n_input=cfg.n_input)
elif cfg.network == "convbirtsn":
model_emb = networks.ConvBiRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
# get the embedding
if cfg.feat == "sensors" or cfg.feat == "segment":
input_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, None])
elif cfg.feat == "resnet" or cfg.feat == "segment_down":
input_ph = tf.placeholder(
tf.float32, shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model_emb.forward(input_ph, dropout_ph)
if cfg.normalized:
embedding = tf.nn.l2_normalize(model_emb.hidden,
axis=-1,
epsilon=1e-10)
else:
embedding = model_emb.hidden
# Use tensorflow implementation for loss functions
if cfg.loss == 'triplet':
metric_loss, active_count = loss_tf.triplet_semihard_loss(
labels=label_ph, embeddings=embedding, margin=cfg.alpha)
elif cfg.loss == 'lifted':
metric_loss, active_count = loss_tf.lifted_struct_loss(
labels=label_ph, embeddings=embedding, margin=cfg.alpha)
else:
raise NotImplementedError
regularization_loss = tf.reduce_sum(
tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES))
total_loss = metric_loss + regularization_loss * cfg.lambda_l2
tf.summary.scalar('learning_rate', lr_ph)
train_op = utils.optimize(total_loss, global_step, cfg.optimizer,
lr_ph, tf.global_variables())
####################### Define data loader ############################
# session iterator for session sampling
feat_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
label_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
train_data = session_generator(feat_paths_ph,
label_paths_ph,
sess_per_batch=cfg.sess_per_batch,
num_threads=2,
shuffled=False,
preprocess_func=model_emb.prepare_input)
train_sess_iterator = train_data.make_initializable_iterator()
next_train = train_sess_iterator.get_next()
# Prepare validation data
val_sess = []
val_feats = []
val_labels = []
val_boundaries = []
for session in val_set:
session_id = os.path.basename(session[1]).split('_')[0]
eve_batch, lab_batch, boundary = load_data_and_label(
session[0], session[-1], model_emb.prepare_input_test
) # use prepare_input_test for testing time
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_sess.extend([session_id] * eve_batch.shape[0])
val_boundaries.extend(boundary)
val_feats = np.concatenate(val_feats, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
print("Shape of val_feats: ", val_feats.shape)
# generate metadata.tsv for visualize embedding
with open(os.path.join(result_dir, 'metadata_val.tsv'), 'w') as fout:
fout.write('id\tlabel\tsession_id\tstart\tend\n')
for i in range(len(val_sess)):
fout.write('{0}\t{1}\t{2}\t{3}\t{4}\n'.format(
i, val_labels[i, 0], val_sess[i], val_boundaries[i][0],
val_boundaries[i][1]))
# Variable for visualizing the embeddings
emb_var = tf.Variable(tf.zeros([val_feats.shape[0], cfg.emb_dim]),
name='embeddings')
set_emb = tf.assign(emb_var, embedding, validate_shape=False)
# calculated for monitoring all-pair embedding distance
diffs = utils.all_diffs_tf(embedding, embedding)
all_dist = utils.cdist_tf(diffs)
tf.summary.histogram('embedding_dists', all_dist)
summary_op = tf.summary.merge_all()
saver = tf.train.Saver(max_to_keep=10)
#########################################################################
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
summary_writer = tf.summary.FileWriter(result_dir, sess.graph)
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load pretrain model, if needed
if cfg.model_path:
print("Restoring pretrained model: %s" % cfg.model_path)
saver.restore(sess, cfg.model_path)
################## Training loop ##################
epoch = -1
while epoch < cfg.max_epochs - 1:
step = sess.run(global_step, feed_dict=None)
epoch = step // batch_per_epoch
# learning rate schedule, reference: "In defense of Triplet Loss"
if epoch < cfg.static_epochs:
learning_rate = cfg.learning_rate
else:
learning_rate = cfg.learning_rate * \
0.01**((epoch-cfg.static_epochs)/(cfg.max_epochs-cfg.static_epochs))
# prepare data for this epoch
random.shuffle(train_set)
feat_paths = [path[0] for path in train_set]
label_paths = [path[1] for path in train_set]
# reshape a list to list of list
# interesting hacky code from: https://stackoverflow.com/questions/10124751/convert-a-flat-list-to-list-of-list-in-python
feat_paths = list(zip(*[iter(feat_paths)] *
cfg.sess_per_batch))
label_paths = list(
zip(*[iter(label_paths)] * cfg.sess_per_batch))
sess.run(train_sess_iterator.initializer,
feed_dict={
feat_paths_ph: feat_paths,
label_paths_ph: label_paths
})
# for each epoch
batch_count = 1
while True:
try:
# Get a batch
start_time_select = time.time()
eve, se, lab = sess.run(next_train)
# for memory concern, cfg.event_per_batch events are used in maximum
if eve.shape[0] > cfg.event_per_batch:
idx = np.random.permutation(
eve.shape[0])[:cfg.event_per_batch]
eve = eve[idx]
se = se[idx]
lab = lab[idx]
select_time = time.time() - start_time_select
start_time_train = time.time()
# perform training on the batch
err, _, step, summ = sess.run(
[total_loss, train_op, global_step, summary_op],
feed_dict={
input_ph: eve,
label_ph: np.squeeze(lab),
dropout_ph: cfg.keep_prob,
lr_ph: learning_rate
})
train_time = time.time() - start_time_train
print ("%s\tEpoch: [%d][%d/%d]\tEvent num: %d\tSelect_time: %.3f\tTrain_time: %.3f\tLoss %.4f" % \
(cfg.name, epoch+1, batch_count, batch_per_epoch, eve.shape[0], select_time, train_time, err))
summary = tf.Summary(value=[
tf.Summary.Value(tag="train_loss",
simple_value=err),
])
summary_writer.add_summary(summary, step)
summary_writer.add_summary(summ, step)
batch_count += 1
except tf.errors.OutOfRangeError:
print("Epoch %d done!" % (epoch + 1))
break
# validation on val_set
print("Evaluating on validation set...")
val_embeddings, _ = sess.run([embedding, set_emb],
feed_dict={
input_ph: val_feats,
dropout_ph: 1.0
})
mAP, mPrec, recall = utils.evaluate_simple(
val_embeddings, val_labels)
summary = tf.Summary(value=[
tf.Summary.Value(tag="Valiation mAP", simple_value=mAP),
tf.Summary.Value(tag="Validation Recall@1",
simple_value=recall),
tf.Summary.Value(tag="Validation [email protected]",
simple_value=mPrec)
])
summary_writer.add_summary(summary, step)
print("Epoch: [%d]\tmAP: %.4f\tmPrec: %.4f" %
(epoch + 1, mAP, mPrec))
# config for embedding visualization
config = projector.ProjectorConfig()
visual_embedding = config.embeddings.add()
visual_embedding.tensor_name = emb_var.name
visual_embedding.metadata_path = os.path.join(
result_dir, 'metadata_val.tsv')
projector.visualize_embeddings(summary_writer, config)
# save model
saver.save(sess,
os.path.join(result_dir, cfg.name + '.ckpt'),
global_step=step)
def main():
cfg = TrainConfig().parse()
print(cfg.name)
result_dir = os.path.join(
cfg.result_root,
cfg.name + '_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
utils.write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
train_session = cfg.train_session
train_set = prepare_dataset(cfg.feature_root, train_session, cfg.feat,
cfg.label_root)
batch_per_epoch = len(train_set) // cfg.sess_per_batch
val_session = cfg.val_session
val_set = prepare_dataset(cfg.feature_root, val_session, cfg.feat,
cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
# load backbone model
if cfg.network == "tsn":
model_emb = networks.TSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "rtsn":
model_emb = networks.RTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
# multitask loss (verification)
model_ver = networks.PairSim2(n_input=cfg.emb_dim)
#model_ver = networks.PairSim(n_input=cfg.emb_dim)
# get the embedding
if cfg.feat == "sensors":
input_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, None])
elif cfg.feat == "resnet":
input_ph = tf.placeholder(
tf.float32, shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model_emb.forward(input_ph, dropout_ph)
if cfg.normalized:
embedding = tf.nn.l2_normalize(model_emb.hidden,
axis=-1,
epsilon=1e-10)
else:
embedding = model_emb.hidden
# variable for visualizing the embeddings
emb_var = tf.Variable([0.0], name='embeddings')
set_emb = tf.assign(emb_var, embedding, validate_shape=False)
# calculated for monitoring all-pair embedding distance
diffs = utils.all_diffs_tf(embedding, embedding)
all_dist = utils.cdist_tf(diffs)
tf.summary.histogram('embedding_dists', all_dist)
# split embedding into anchor, positive and negative and calculate triplet loss
anchor, positive, negative = tf.unstack(
tf.reshape(embedding, [-1, 3, cfg.emb_dim]), 3, 1)
metric_loss = networks.triplet_loss(anchor, positive, negative,
cfg.alpha)
# verification loss
pos_pairs = tf.concat(
[tf.expand_dims(anchor, axis=1),
tf.expand_dims(positive, axis=1)],
axis=1)
pos_label = tf.ones((tf.shape(pos_pairs)[0], ), tf.int32)
neg_pairs = tf.concat(
[tf.expand_dims(anchor, axis=1),
tf.expand_dims(negative, axis=1)],
axis=1)
neg_label = tf.zeros((tf.shape(neg_pairs)[0], ), tf.int32)
ver_pairs = tf.concat([pos_pairs, neg_pairs], axis=0)
ver_label = tf.concat([pos_label, neg_label], axis=0)
model_ver.forward(ver_pairs, dropout_ph)
logits = model_ver.logits
pred = tf.argmax(logits, -1)
ver_loss = tf.reduce_mean(
tf.nn.sparse_softmax_cross_entropy_with_logits(labels=ver_label,
logits=logits))
regularization_loss = tf.reduce_sum(
tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES))
total_loss = metric_loss + cfg.lambda_ver * ver_loss + regularization_loss * cfg.lambda_l2
tf.summary.scalar('learning_rate', lr_ph)
train_op = utils.optimize(total_loss, global_step, cfg.optimizer,
lr_ph, tf.global_variables())
saver = tf.train.Saver(max_to_keep=10)
summary_op = tf.summary.merge_all()
# session iterator for session sampling
feat_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
label_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
train_data = session_generator(feat_paths_ph,
label_paths_ph,
sess_per_batch=cfg.sess_per_batch,
num_threads=2,
shuffled=False,
preprocess_func=model_emb.prepare_input)
train_sess_iterator = train_data.make_initializable_iterator()
next_train = train_sess_iterator.get_next()
# prepare validation data
val_sess = []
val_feats = []
val_labels = []
val_boundaries = []
for session in val_set:
session_id = os.path.basename(session[1]).split('_')[0]
eve_batch, lab_batch, boundary = load_data_and_label(
session[0], session[1], model_emb.prepare_input_test
) # use prepare_input_test for testing time
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_sess.extend([session_id] * eve_batch.shape[0])
val_boundaries.extend(boundary)
val_feats = np.concatenate(val_feats, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
print("Shape of val_feats: ", val_feats.shape)
# generate metadata.tsv for visualize embedding
with open(os.path.join(result_dir, 'metadata_val.tsv'), 'w') as fout:
fout.write('id\tlabel\tsession_id\tstart\tend\n')
for i in range(len(val_sess)):
fout.write('{0}\t{1}\t{2}\t{3}\t{4}\n'.format(
i, val_labels[i, 0], val_sess[i], val_boundaries[i][0],
val_boundaries[i][1]))
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
summary_writer = tf.summary.FileWriter(result_dir, sess.graph)
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load pretrain model, if needed
if cfg.model_path:
print("Restoring pretrained model: %s" % cfg.model_path)
saver.restore(sess, cfg.model_path)
################## Training loop ##################
epoch = -1
while epoch < cfg.max_epochs - 1:
step = sess.run(global_step, feed_dict=None)
epoch = step // batch_per_epoch
# learning rate schedule, reference: "In defense of Triplet Loss"
if epoch < cfg.static_epochs:
learning_rate = cfg.learning_rate
else:
learning_rate = cfg.learning_rate * \
0.001**((epoch-cfg.static_epochs)/(cfg.max_epochs-cfg.static_epochs))
# prepare data for this epoch
random.shuffle(train_set)
feat_paths = [path[0] for path in train_set]
label_paths = [path[1] for path in train_set]
# reshape a list to list of list
# interesting hacky code from: https://stackoverflow.com/questions/10124751/convert-a-flat-list-to-list-of-list-in-python
feat_paths = list(zip(*[iter(feat_paths)] *
cfg.sess_per_batch))
label_paths = list(
zip(*[iter(label_paths)] * cfg.sess_per_batch))
sess.run(train_sess_iterator.initializer,
feed_dict={
feat_paths_ph: feat_paths,
label_paths_ph: label_paths
})
# for each epoch
batch_count = 1
while True:
try:
# Hierarchical sampling (same as fast rcnn)
start_time_select = time.time()
# First, sample sessions for a batch
eve, se, lab = sess.run(next_train)
select_time1 = time.time() - start_time_select
# Get the embeddings of all events
eve_embedding = np.zeros((eve.shape[0], cfg.emb_dim),
dtype='float32')
for start, end in zip(
range(0, eve.shape[0], cfg.batch_size),
range(cfg.batch_size,
eve.shape[0] + cfg.batch_size,
cfg.batch_size)):
end = min(end, eve.shape[0])
emb = sess.run(embedding,
feed_dict={
input_ph: eve[start:end],
dropout_ph: 1.0
})
eve_embedding[start:end] = emb
# Second, sample triplets within sampled sessions
triplet_input, negative_count = select_triplets_facenet(
eve,
lab,
eve_embedding,
cfg.triplet_per_batch,
cfg.alpha,
metric=cfg.metric)
select_time2 = time.time(
) - start_time_select - select_time1
if triplet_input is not None:
start_time_train = time.time()
# perform training on the selected triplets
err, metric_err, ver_err, y_pred, _, step, summ = sess.run(
[
total_loss, metric_loss, ver_loss, pred,
train_op, global_step, summary_op
],
feed_dict={
input_ph: triplet_input,
dropout_ph: cfg.keep_prob,
lr_ph: learning_rate
})
train_time = time.time() - start_time_train
# calculate accuracy
batch_label = np.hstack(
(np.ones((triplet_input.shape[0] // 3, ),
dtype='int32'),
np.zeros((triplet_input.shape[0] // 3, ),
dtype='int32')))
acc = accuracy_score(batch_label, y_pred)
print ("%s\tEpoch: [%d][%d/%d]\tEvent num: %d\tTriplet num: %d\tSelect_time1: %.3f\tSelect_time2: %.3f\tTrain_time: %.3f\tLoss %.4f" % \
(cfg.name, epoch+1, batch_count, batch_per_epoch, eve.shape[0], triplet_input.shape[0], select_time1, select_time2, train_time, err))
summary = tf.Summary(value=[
tf.Summary.Value(tag="train_loss",
simple_value=err),
tf.Summary.Value(tag="metric_loss",
simple_value=metric_err),
tf.Summary.Value(tag="ver_loss",
simple_value=ver_err),
tf.Summary.Value(tag="acc", simple_value=acc),
tf.Summary.Value(tag="negative_count",
simple_value=negative_count)
])
summary_writer.add_summary(summary, step)
summary_writer.add_summary(summ, step)
batch_count += 1
except tf.errors.OutOfRangeError:
print("Epoch %d done!" % (epoch + 1))
break
# validation on val_set
print("Evaluating on validation set...")
val_embeddings, _ = sess.run([embedding, set_emb],
feed_dict={
input_ph: val_feats,
dropout_ph: 1.0
})
mAP, mPrec = utils.evaluate_simple(val_embeddings, val_labels)
summary = tf.Summary(value=[
tf.Summary.Value(tag="Valiation mAP", simple_value=mAP),
tf.Summary.Value(tag="Validation [email protected]",
simple_value=mPrec)
])
summary_writer.add_summary(summary, step)
# config for embedding visualization
config = projector.ProjectorConfig()
visual_embedding = config.embeddings.add()
visual_embedding.tensor_name = emb_var.name
visual_embedding.metadata_path = os.path.join(
result_dir, 'metadata_val.tsv')
projector.visualize_embeddings(summary_writer, config)
# save model
saver.save(sess,
os.path.join(result_dir, cfg.name + '.ckpt'),
global_step=step)
def main():
cfg = TrainConfig().parse()
print(cfg.name)
result_dir = os.path.join(
cfg.result_root,
cfg.name + '_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
utils.write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
train_session = cfg.train_session
train_set = prepare_multimodal_dataset(cfg.feature_root, train_session,
cfg.feat, cfg.label_root)
if cfg.task == "supervised": # fully supervised task
train_set = train_set[:cfg.label_num]
batch_per_epoch = len(train_set) // cfg.sess_per_batch
labeled_session = train_session[:cfg.label_num]
val_session = cfg.val_session
val_set = prepare_multimodal_dataset(cfg.feature_root, val_session,
cfg.feat, cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
####################### Load models here ########################
sensors_emb_dim = 32
segment_emb_dim = 32
with tf.variable_scope("modality_core"):
# load backbone model
if cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convbirtsn":
model_emb = networks.ConvBiRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
input_ph = tf.placeholder(
tf.float32, shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model_emb.forward(input_ph,
dropout_ph) # for lstm has variable scope
with tf.variable_scope("modality_sensors"):
model_emb_sensors = networks.RTSN(n_seg=cfg.num_seg,
emb_dim=sensors_emb_dim)
model_pairsim_sensors = networks.PDDM(n_input=sensors_emb_dim)
input_sensors_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, 8])
model_emb_sensors.forward(input_sensors_ph, dropout_ph)
var_list = {}
for v in tf.global_variables():
if v.op.name.startswith("modality_sensors"):
var_list[v.op.name.replace("modality_sensors/", "")] = v
restore_saver_sensors = tf.train.Saver(var_list)
with tf.variable_scope("modality_segment"):
model_emb_segment = networks.RTSN(n_seg=cfg.num_seg,
emb_dim=segment_emb_dim,
n_input=357)
model_pairsim_segment = networks.PDDM(n_input=segment_emb_dim)
input_segment_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, 357])
model_emb_segment.forward(input_segment_ph, dropout_ph)
var_list = {}
for v in tf.global_variables():
if v.op.name.startswith("modality_segment"):
var_list[v.op.name.replace("modality_segment/", "")] = v
restore_saver_segment = tf.train.Saver(var_list)
############################# Forward Pass #############################
# Core branch
if cfg.normalized:
embedding = tf.nn.l2_normalize(model_emb.hidden,
axis=-1,
epsilon=1e-10)
else:
embedding = model_emb.hidden
# get the number of multimodal triplets (x3)
mul_num_ph = tf.placeholder(tf.int32, shape=[])
margins_ph = tf.placeholder(tf.float32, shape=[None])
struct_num = tf.shape(margins_ph)[0] * 3
# variable for visualizing the embeddings
emb_var = tf.Variable([0.0], name='embeddings')
set_emb = tf.assign(emb_var, embedding, validate_shape=False)
# calculated for monitoring all-pair embedding distance
diffs = utils.all_diffs_tf(embedding, embedding)
all_dist = utils.cdist_tf(diffs)
tf.summary.histogram('embedding_dists', all_dist)
# split embedding into anchor, positive and negative and calculate triplet loss
anchor, positive, negative = tf.unstack(
tf.reshape(embedding[:(tf.shape(embedding)[0] - mul_num_ph)],
[-1, 3, cfg.emb_dim]), 3, 1)
anchor_hard, positive_hard, negative_hard = tf.unstack(
tf.reshape(embedding[-mul_num_ph:-struct_num],
[-1, 3, cfg.emb_dim]), 3, 1)
anchor_struct, positive_struct, negative_struct = tf.unstack(
tf.reshape(embedding[-struct_num:], [-1, 3, cfg.emb_dim]), 3, 1)
# Sensors branch
emb_sensors = model_emb_sensors.hidden
A_sensors, B_sensors, C_sensors = tf.unstack(
tf.reshape(emb_sensors, [-1, 3, sensors_emb_dim]), 3, 1)
model_pairsim_sensors.forward(tf.stack([A_sensors, B_sensors], axis=1))
pddm_AB_sensors = model_pairsim_sensors.prob[:, 1]
model_pairsim_sensors.forward(tf.stack([A_sensors, C_sensors], axis=1))
pddm_AC_sensors = model_pairsim_sensors.prob[:, 1]
# Segment branch
emb_segment = model_emb_segment.hidden
A_segment, B_segment, C_segment = tf.unstack(
tf.reshape(emb_segment, [-1, 3, segment_emb_dim]), 3, 1)
model_pairsim_segment.forward(tf.stack([A_segment, B_segment], axis=1))
pddm_AB_segment = model_pairsim_segment.prob[:, 1]
model_pairsim_segment.forward(tf.stack([A_segment, C_segment], axis=1))
pddm_AC_segment = model_pairsim_segment.prob[:, 1]
# fuse prob from all modalities
prob_AB = 0.5 * (pddm_AB_sensors + pddm_AB_segment)
prob_AC = 0.5 * (pddm_AC_sensors + pddm_AC_segment)
############################# Calculate loss #############################
# triplet loss for labeled inputs
metric_loss1 = networks.triplet_loss(anchor, positive, negative,
cfg.alpha)
# weighted triplet loss for multimodal inputs
# if cfg.weighted:
# metric_loss2, _ = networks.weighted_triplet_loss(anchor_hard, positive_hard, negative_hard, prob_AB, prob_AC, cfg.alpha)
# else:
# triplet loss for hard examples from multimodal data
metric_loss2 = networks.triplet_loss(anchor_hard, positive_hard,
negative_hard, cfg.alpha)
# margin-based triplet loss for structure mining from multimodal data
metric_loss3 = networks.triplet_loss(anchor_struct, positive_struct,
negative_struct, margins_ph)
# whether to apply joint optimization
if cfg.no_joint:
unimodal_var_list = [
v for v in tf.global_variables()
if v.op.name.startswith("modality_core")
]
train_var_list = unimodal_var_list
else:
multimodal_var_list = [
v for v in tf.global_variables()
if not (v.op.name.startswith("modality_sensors/RTSN")
or v.op.name.startswith("modality_segment/RTSN"))
]
train_var_list = multimodal_var_list
regularization_loss = tf.reduce_sum(
tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES))
total_loss = tf.cond(
tf.greater(mul_num_ph, 0), lambda: tf.cond(
tf.equal(mul_num_ph,
tf.shape(embedding)[0]), lambda:
(metric_loss2 + metric_loss3 * 0.3) * cfg.lambda_multimodal +
regularization_loss * cfg.lambda_l2, lambda: metric_loss1 +
(metric_loss2 + metric_loss3 * 0.3) * cfg.lambda_multimodal +
regularization_loss * cfg.lambda_l2),
lambda: metric_loss1 + regularization_loss * cfg.lambda_l2)
tf.summary.scalar('learning_rate', lr_ph)
train_op = utils.optimize(total_loss, global_step, cfg.optimizer,
lr_ph, train_var_list)
saver = tf.train.Saver(max_to_keep=10)
summary_op = tf.summary.merge_all(
) # not logging histogram of variables because it will cause problem when only unimodal_train_op is called
summ_prob_AB = tf.summary.histogram('Prob_AB_histogram', prob_AB)
summ_prob_AC = tf.summary.histogram('Prob_AC_histogram', prob_AC)
# summ_weights = tf.summary.histogram('Weights_histogram', weights)
#########################################################################
# session iterator for session sampling
feat_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
feat2_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
feat3_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
label_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
train_data = multimodal_session_generator(
feat_paths_ph,
feat2_paths_ph,
feat3_paths_ph,
label_paths_ph,
sess_per_batch=cfg.sess_per_batch,
num_threads=2,
shuffled=False,
preprocess_func=[
model_emb.prepare_input, model_emb_sensors.prepare_input,
model_emb_segment.prepare_input
])
train_sess_iterator = train_data.make_initializable_iterator()
next_train = train_sess_iterator.get_next()
# prepare validation data
val_sess = []
val_feats = []
val_feats2 = []
val_feats3 = []
val_labels = []
val_boundaries = []
for session in val_set:
session_id = os.path.basename(session[1]).split('_')[0]
eve_batch, lab_batch, boundary = load_data_and_label(
session[0], session[-1], model_emb.prepare_input_test
) # use prepare_input_test for testing time
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_sess.extend([session_id] * eve_batch.shape[0])
val_boundaries.extend(boundary)
eve2_batch, _, _ = load_data_and_label(
session[1], session[-1], model_emb_sensors.prepare_input_test)
val_feats2.append(eve2_batch)
eve3_batch, _, _ = load_data_and_label(
session[2], session[-1], model_emb_segment.prepare_input_test)
val_feats3.append(eve3_batch)
val_feats = np.concatenate(val_feats, axis=0)
val_feats2 = np.concatenate(val_feats2, axis=0)
val_feats3 = np.concatenate(val_feats3, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
print("Shape of val_feats: ", val_feats.shape)
# generate metadata.tsv for visualize embedding
with open(os.path.join(result_dir, 'metadata_val.tsv'), 'w') as fout:
fout.write('id\tlabel\tsession_id\tstart\tend\n')
for i in range(len(val_sess)):
fout.write('{0}\t{1}\t{2}\t{3}\t{4}\n'.format(
i, val_labels[i, 0], val_sess[i], val_boundaries[i][0],
val_boundaries[i][1]))
#########################################################################
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
summary_writer = tf.summary.FileWriter(result_dir, sess.graph)
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load pretrain model, if needed
if cfg.model_path:
print("Restoring pretrained model: %s" % cfg.model_path)
saver.restore(sess, cfg.model_path)
print("Restoring sensors model: %s" % cfg.sensors_path)
restore_saver_sensors.restore(sess, cfg.sensors_path)
print("Restoring segment model: %s" % cfg.segment_path)
restore_saver_segment.restore(sess, cfg.segment_path)
################## Training loop ##################
# Initialize pairwise embedding distance for each class on validation set
val_embeddings, _ = sess.run([embedding, set_emb],
feed_dict={
input_ph: val_feats,
dropout_ph: 1.0
})
dist_dict = {}
for i in range(np.max(val_labels) + 1):
temp_emb = val_embeddings[np.where(val_labels == i)[0]]
dist_dict[i] = [
np.mean(
utils.cdist(utils.all_diffs(temp_emb, temp_emb),
metric=cfg.metric))
]
epoch = -1
while epoch < cfg.max_epochs - 1:
step = sess.run(global_step, feed_dict=None)
epoch = step // batch_per_epoch
# learning rate schedule, reference: "In defense of Triplet Loss"
if epoch < cfg.static_epochs:
learning_rate = cfg.learning_rate
else:
learning_rate = cfg.learning_rate * \
0.01**((epoch-cfg.static_epochs)/(cfg.max_epochs-cfg.static_epochs))
# prepare data for this epoch
random.shuffle(train_set)
paths = list(zip(*[iter(train_set)] * cfg.sess_per_batch))
feat_paths = [[p[0] for p in path] for path in paths]
feat2_paths = [[p[1] for p in path] for path in paths]
feat3_paths = [[p[2] for p in path] for path in paths]
label_paths = [[p[-1] for p in path] for path in paths]
sess.run(train_sess_iterator.initializer,
feed_dict={
feat_paths_ph: feat_paths,
feat2_paths_ph: feat2_paths,
feat3_paths_ph: feat3_paths,
label_paths_ph: label_paths
})
# for each epoch
batch_count = 1
while True:
try:
##################### Data loading ########################
start_time = time.time()
eve, eve_sensors, eve_segment, lab, batch_sess = sess.run(
next_train)
# for memory concern, 1000 events are used in maximum
if eve.shape[0] > cfg.event_per_batch:
idx = np.random.permutation(
eve.shape[0])[:cfg.event_per_batch]
eve = eve[idx]
eve_sensors = eve_sensors[idx]
eve_segment = eve_segment[idx]
lab = lab[idx]
batch_sess = batch_sess[idx]
load_time = time.time() - start_time
##################### Triplet selection #####################
start_time = time.time()
# Get the embeddings of all events
eve_embedding = np.zeros((eve.shape[0], cfg.emb_dim),
dtype='float32')
for start, end in zip(
range(0, eve.shape[0], cfg.batch_size),
range(cfg.batch_size,
eve.shape[0] + cfg.batch_size,
cfg.batch_size)):
end = min(end, eve.shape[0])
emb = sess.run(embedding,
feed_dict={
input_ph: eve[start:end],
dropout_ph: 1.0
})
eve_embedding[start:end] = np.copy(emb)
# sample triplets within sampled sessions
all_diff = utils.all_diffs(eve_embedding,
eve_embedding)
triplet_selected, active_count = utils.select_triplets_facenet(
lab, utils.cdist(all_diff, metric=cfg.metric),
cfg.triplet_per_batch, cfg.alpha)
hard_count = 0
struct_count = 0
if epoch >= cfg.multimodal_epochs:
# Get the similarity of all events
sim_prob = np.zeros((eve.shape[0], eve.shape[0]),
dtype='float32') * np.nan
comb = list(
itertools.combinations(range(eve.shape[0]), 2))
for start, end in zip(
range(0, len(comb), cfg.batch_size),
range(cfg.batch_size,
len(comb) + cfg.batch_size,
cfg.batch_size)):
end = min(end, len(comb))
comb_idx = []
for c in comb[start:end]:
comb_idx.extend([c[0], c[1], c[1]])
sim = sess.run(prob_AB,
feed_dict={
input_sensors_ph:
eve_sensors[comb_idx],
input_segment_ph:
eve_segment[comb_idx],
dropout_ph:
1.0
})
for i in range(sim.shape[0]):
sim_prob[comb[start + i][0],
comb[start + i][1]] = sim[i]
sim_prob[comb[start + i][1],
comb[start + i][0]] = sim[i]
# sample triplets from similarity prediction
# maximum number not exceed the cfg.triplet_per_batch
triplet_input_idx, margins, triplet_count, hard_count, struct_count = select_triplets_mul(
triplet_selected, lab, sim_prob, dist_dict,
cfg.triplet_per_batch, 3, 0.8, 0.2)
# add up all multimodal triplets
multimodal_count = hard_count + struct_count
sensors_input = eve_sensors[
triplet_input_idx[-(3 * multimodal_count):]]
segment_input = eve_segment[
triplet_input_idx[-(3 * multimodal_count):]]
print(triplet_count, hard_count, struct_count)
triplet_input = eve[triplet_input_idx]
select_time = time.time() - start_time
if len(triplet_input.shape) > 5: # debugging
pdb.set_trace()
##################### Start training ########################
# supervised initialization
if multimodal_count == 0:
if triplet_count == 0:
continue
err, metric_err1, _, step, summ = sess.run(
[
total_loss, metric_loss1, train_op,
global_step, summary_op
],
feed_dict={
input_ph: triplet_input,
dropout_ph: cfg.keep_prob,
mul_num_ph: 0,
lr_ph: learning_rate
})
metric_err2 = 0
metric_err3 = 0
else:
err, metric_err1, metric_err2, metric_err3, _, step, summ, s_AB, s_AC = sess.run(
[
total_loss, metric_loss1, metric_loss2,
metric_loss3, train_op, global_step,
summary_op, summ_prob_AB, summ_prob_AC
],
feed_dict={
input_ph: triplet_input,
input_sensors_ph: sensors_input,
input_segment_ph: segment_input,
mul_num_ph: multimodal_count * 3,
margins_ph: margins,
dropout_ph: cfg.keep_prob,
lr_ph: learning_rate
})
summary_writer.add_summary(s_AB, step)
summary_writer.add_summary(s_AC, step)
print ("%s\tEpoch: [%d][%d/%d]\tEvent num: %d\tTriplet num: %d\tLoad time: %.3f\tSelect time: %.3f\tLoss %.4f" % \
(cfg.name, epoch+1, batch_count, batch_per_epoch, eve.shape[0], triplet_count+multimodal_count, load_time, select_time, err))
summary = tf.Summary(value=[
tf.Summary.Value(tag="train_loss",
simple_value=err),
tf.Summary.Value(tag="active_count",
simple_value=active_count),
tf.Summary.Value(tag="triplet_count",
simple_value=triplet_count),
tf.Summary.Value(tag="hard_count",
simple_value=hard_count),
tf.Summary.Value(tag="struct_count",
simple_value=struct_count),
tf.Summary.Value(tag="metric_loss1",
simple_value=metric_err1),
tf.Summary.Value(tag="metric_loss3",
simple_value=metric_err3),
tf.Summary.Value(tag="metric_loss2",
simple_value=metric_err2)
])
summary_writer.add_summary(summary, step)
summary_writer.add_summary(summ, step)
batch_count += 1
except tf.errors.OutOfRangeError:
print("Epoch %d done!" % (epoch + 1))
break
# validation on val_set
print("Evaluating on validation set...")
val_embeddings, _ = sess.run([embedding, set_emb],
feed_dict={
input_ph: val_feats,
dropout_ph: 1.0
})
mAP, mPrec, recall = utils.evaluate_simple(
val_embeddings, val_labels)
summary = tf.Summary(value=[
tf.Summary.Value(tag="Valiation mAP", simple_value=mAP),
tf.Summary.Value(tag="Validation Recall@1",
simple_value=recall),
tf.Summary.Value(tag="Validation [email protected]",
simple_value=mPrec)
])
summary_writer.add_summary(summary, step)
print("Epoch: [%d]\tmAP: %.4f\tmPrec: %.4f" %
(epoch + 1, mAP, mPrec))
# config for embedding visualization
config = projector.ProjectorConfig()
visual_embedding = config.embeddings.add()
visual_embedding.tensor_name = emb_var.name
visual_embedding.metadata_path = os.path.join(
result_dir, 'metadata_val.tsv')
projector.visualize_embeddings(summary_writer, config)
# update dist_dict
if (epoch + 1) == 50 or (epoch + 1) % 200 == 0:
for i in dist_dict.keys():
temp_emb = val_embeddings[np.where(val_labels == i)[0]]
dist_dict[i].append(
np.mean(
utils.cdist(utils.all_diffs(
temp_emb, temp_emb),
metric=cfg.metric)))
pickle.dump(
dist_dict,
open(os.path.join(result_dir, 'dist_dict.pkl'), 'wb'))
# save model
saver.save(sess,
os.path.join(result_dir, cfg.name + '.ckpt'),
global_step=step)
def main():
cfg = TrainConfig().parse()
print(cfg.name)
result_dir = os.path.join(
cfg.result_root,
cfg.name + '_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
utils.write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
train_session = cfg.train_session
train_set = prepare_multimodal_dataset(cfg.feature_root, train_session,
cfg.feat, cfg.label_root)
train_set = train_set[:cfg.label_num]
batch_per_epoch = len(train_set) // cfg.sess_per_batch
val_session = cfg.val_session
val_set = prepare_multimodal_dataset(cfg.feature_root, val_session,
cfg.feat, cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
label_ph = tf.placeholder(tf.int32, shape=[None], name="label")
####################### Load models here ########################
with tf.variable_scope("modality_core"):
# load backbone model
if cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
input_ph = tf.placeholder(
tf.float32, shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model_emb.forward(input_ph,
dropout_ph) # for lstm has variable scope
with tf.variable_scope("modality_sensors"):
sensors_emb_dim = 32
model_emb_sensors = networks.RTSN(n_seg=cfg.num_seg,
emb_dim=sensors_emb_dim)
input_sensors_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, 8])
model_emb_sensors.forward(input_sensors_ph, dropout_ph)
var_list = {}
for v in tf.global_variables():
if v.op.name.startswith("modality_sensors"):
var_list[v.op.name.replace("modality_sensors/", "")] = v
restore_saver_sensors = tf.train.Saver(var_list)
with tf.variable_scope("hallucination_sensors"):
# load backbone model
if cfg.network == "convtsn":
hal_emb_sensors = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=sensors_emb_dim)
elif cfg.network == "convrtsn":
hal_emb_sensors = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=sensors_emb_dim)
else:
raise NotImplementedError
hal_emb_sensors.forward(input_ph,
dropout_ph) # for lstm has variable scope
with tf.variable_scope("modality_segment"):
segment_emb_dim = 32
model_emb_segment = networks.RTSN(n_seg=cfg.num_seg,
emb_dim=segment_emb_dim,
n_input=357)
input_segment_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, 357])
model_emb_segment.forward(input_segment_ph, dropout_ph)
var_list = {}
for v in tf.global_variables():
if v.op.name.startswith("modality_segment"):
var_list[v.op.name.replace("modality_segment/", "")] = v
restore_saver_segment = tf.train.Saver(var_list)
with tf.variable_scope("hallucination_segment"):
# load backbone model
if cfg.network == "convtsn":
hal_emb_segment = networks.ConvTSN(n_seg=cfg.num_seg,
emb_dim=segment_emb_dim)
elif cfg.network == "convrtsn":
hal_emb_segment = networks.ConvRTSN(n_seg=cfg.num_seg,
emb_dim=segment_emb_dim)
else:
raise NotImplementedError
hal_emb_segment.forward(input_ph,
dropout_ph) # for lstm has variable scope
############################# Forward Pass #############################
# Core branch
if cfg.normalized:
embedding = tf.nn.l2_normalize(model_emb.hidden,
axis=-1,
epsilon=1e-10)
embedding_sensors = tf.nn.l2_normalize(model_emb_sensors.hidden,
axis=-1,
epsilon=1e-10)
embedding_hal_sensors = tf.nn.l2_normalize(hal_emb_sensors.hidden,
axis=-1,
epsilon=1e-10)
embedding_segment = tf.nn.l2_normalize(model_emb_segment.hidden,
axis=-1,
epsilon=1e-10)
embedding_hal_segment = tf.nn.l2_normalize(hal_emb_segment.hidden,
axis=-1,
epsilon=1e-10)
else:
embedding = model_emb.hidden
embedding_sensors = model_emb_sensors.hidden
embedding_hal_sensors = hal_emb_sensors.hidden
embedding_segment = model_emb_segment.hidden
embedding_hal_segment = hal_emb_segment.hidden
# calculated for monitoring all-pair embedding distance
diffs = utils.all_diffs_tf(embedding, embedding)
all_dist = utils.cdist_tf(diffs)
tf.summary.histogram('embedding_dists', all_dist)
# a fusion embedding
embedding_fused = tf.concat(
(embedding, embedding_hal_sensors, embedding_hal_segment), axis=1)
############################# Calculate loss #############################
# Use tensorflow implementation for loss functions
if cfg.loss == 'triplet':
metric_loss1, active_count = loss_tf.triplet_semihard_loss(
labels=label_ph, embeddings=embedding, margin=cfg.alpha)
metric_loss2, _ = loss_tf.triplet_semihard_loss(
labels=label_ph,
embeddings=embedding_sensors,
margin=cfg.alpha)
metric_loss3, _ = loss_tf.triplet_semihard_loss(
labels=label_ph,
embeddings=embedding_hal_sensors,
margin=cfg.alpha)
metric_loss4, _ = loss_tf.triplet_semihard_loss(
labels=label_ph,
embeddings=embedding_segment,
margin=cfg.alpha)
metric_loss5, _ = loss_tf.triplet_semihard_loss(
labels=label_ph,
embeddings=embedding_hal_segment,
margin=cfg.alpha)
metric_loss6, _ = loss_tf.triplet_semihard_loss(
labels=label_ph, embeddings=embedding_fused, margin=cfg.alpha)
metric_loss = metric_loss1 + metric_loss2 + metric_loss3 + metric_loss4 + metric_loss5 + metric_loss6
# elif cfg.loss == 'lifted':
# metric_loss, active_count = loss_tf.lifted_struct_loss(
# labels=label_ph,
# embeddings=embedding,
# margin=cfg.alpha)
else:
raise NotImplementedError
# hallucination loss (regression loss)
hal_loss_sensors = tf.nn.l2_loss(embedding_sensors -
embedding_hal_sensors)
hal_loss_segment = tf.nn.l2_loss(embedding_segment -
embedding_hal_segment)
hal_loss = hal_loss_sensors + hal_loss_segment
regularization_loss = tf.reduce_sum(
tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES))
# use lambda_multimodal for hal_loss
total_loss = metric_loss + cfg.lambda_multimodal * hal_loss + regularization_loss * cfg.lambda_l2
tf.summary.scalar('learning_rate', lr_ph)
train_op = utils.optimize(total_loss, global_step, cfg.optimizer,
lr_ph, tf.global_variables())
#########################################################################
# session iterator for session sampling
feat_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
feat2_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
feat3_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
label_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
train_data = multimodal_session_generator(
feat_paths_ph,
feat2_paths_ph,
feat3_paths_ph,
label_paths_ph,
sess_per_batch=cfg.sess_per_batch,
num_threads=2,
shuffled=False,
preprocess_func=[
model_emb.prepare_input, model_emb_sensors.prepare_input,
model_emb_segment.prepare_input
])
train_sess_iterator = train_data.make_initializable_iterator()
next_train = train_sess_iterator.get_next()
# prepare validation data
val_sess = []
val_feats = []
val_feats2 = []
val_feats3 = []
val_labels = []
val_boundaries = []
for session in val_set:
session_id = os.path.basename(session[1]).split('_')[0]
eve_batch, lab_batch, boundary = load_data_and_label(
session[0], session[-1], model_emb.prepare_input_test
) # use prepare_input_test for testing time
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_sess.extend([session_id] * eve_batch.shape[0])
val_boundaries.extend(boundary)
eve2_batch, _, _ = load_data_and_label(
session[1], session[-1], model_emb_sensors.prepare_input_test)
val_feats2.append(eve2_batch)
eve3_batch, _, _ = load_data_and_label(
session[2], session[-1], model_emb_segment.prepare_input_test)
val_feats3.append(eve3_batch)
val_feats = np.concatenate(val_feats, axis=0)
val_feats2 = np.concatenate(val_feats2, axis=0)
val_feats3 = np.concatenate(val_feats3, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
print("Shape of val_feats: ", val_feats.shape)
# generate metadata.tsv for visualize embedding
with open(os.path.join(result_dir, 'metadata_val.tsv'), 'w') as fout:
fout.write('id\tlabel\tsession_id\tstart\tend\n')
for i in range(len(val_sess)):
fout.write('{0}\t{1}\t{2}\t{3}\t{4}\n'.format(
i, val_labels[i, 0], val_sess[i], val_boundaries[i][0],
val_boundaries[i][1]))
# Variable for visualizing the embeddings
emb_var = tf.Variable(tf.zeros([val_feats.shape[0], cfg.emb_dim]),
name='embeddings')
set_emb = tf.assign(emb_var, embedding, validate_shape=False)
summary_op = tf.summary.merge_all()
saver = tf.train.Saver(max_to_keep=10)
#########################################################################
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
summary_writer = tf.summary.FileWriter(result_dir, sess.graph)
with sess.as_default():
sess.run(tf.global_variables_initializer())
print("Restoring sensors model: %s" % cfg.sensors_path)
restore_saver_sensors.restore(sess, cfg.sensors_path)
print("Restoring segment model: %s" % cfg.segment_path)
restore_saver_segment.restore(sess, cfg.segment_path)
# load pretrain model, if needed
if cfg.model_path:
print("Restoring pretrained model: %s" % cfg.model_path)
saver.restore(sess, cfg.model_path)
################## Training loop ##################
epoch = -1
while epoch < cfg.max_epochs - 1:
step = sess.run(global_step, feed_dict=None)
epoch = step // batch_per_epoch
# learning rate schedule, reference: "In defense of Triplet Loss"
if epoch < cfg.static_epochs:
learning_rate = cfg.learning_rate
else:
learning_rate = cfg.learning_rate * \
0.01**((epoch-cfg.static_epochs)/(cfg.max_epochs-cfg.static_epochs))
# prepare data for this epoch
random.shuffle(train_set)
paths = list(zip(*[iter(train_set)] * cfg.sess_per_batch))
feat_paths = [[p[0] for p in path] for path in paths]
feat2_paths = [[p[1] for p in path] for path in paths]
feat3_paths = [[p[2] for p in path] for path in paths]
label_paths = [[p[-1] for p in path] for path in paths]
sess.run(train_sess_iterator.initializer,
feed_dict={
feat_paths_ph: feat_paths,
feat2_paths_ph: feat2_paths,
feat3_paths_ph: feat3_paths,
label_paths_ph: label_paths
})
# for each epoch
batch_count = 1
while True:
try:
##################### Data loading ########################
start_time = time.time()
eve, eve_sensors, eve_segment, lab, batch_sess = sess.run(
next_train)
# for memory concern, cfg.event_per_batch events are used in maximum
if eve.shape[0] > cfg.event_per_batch:
idx = np.random.permutation(
eve.shape[0])[:cfg.event_per_batch]
eve = eve[idx]
eve_sensors = eve_sensors[idx]
eve_segment = eve_segment[idx]
batch_sess = batch_sess[idx]
lab = lab[idx]
load_time = time.time() - start_time
##################### Start training ########################
err, metric_err, hal_err, _, step, summ = sess.run(
[
total_loss, metric_loss, hal_loss, train_op,
global_step, summary_op
],
feed_dict={
input_ph: eve,
input_sensors_ph: eve_sensors,
input_segment_ph: eve_segment,
label_ph: np.squeeze(lab),
dropout_ph: cfg.keep_prob,
lr_ph: learning_rate
})
print ("%s\tEpoch: [%d][%d/%d]\tEvent num: %d\tLoad time: %.3f\tMetric Loss %.4f\tHal Loss %.4f" % \
(cfg.name, epoch+1, batch_count, batch_per_epoch, eve.shape[0], triplet_input.shape[0]//3, load_time, select_time, metric_err, hal_err))
summary = tf.Summary(value=[
tf.Summary.Value(tag="train_loss",
simple_value=err),
tf.Summary.Value(tag="active_count",
simple_value=active_count),
tf.Summary.Value(tag="metric_loss",
simple_value=metric_err),
tf.Summary.Value(tag="hallucination_loss",
simple_value=hal_err)
])
summary_writer.add_summary(summary, step)
summary_writer.add_summary(summ, step)
batch_count += 1
except tf.errors.OutOfRangeError:
print("Epoch %d done!" % (epoch + 1))
break
# validation on val_set
print("Evaluating on validation set...")
val_embeddings, hal_err, _ = sess.run(
[embedding, hal_loss, set_emb],
feed_dict={
input_ph: val_feats,
input_sensors_ph: val_feats2,
input_segment_ph: val_feats3,
dropout_ph: 1.0
})
mAP, mPrec = utils.evaluate_simple(val_embeddings, val_labels)
summary = tf.Summary(value=[
tf.Summary.Value(tag="Valiation mAP", simple_value=mAP),
tf.Summary.Value(tag="Validation [email protected]",
simple_value=mPrec),
tf.Summary.Value(tag="Validation hal loss",
simple_value=hal_err)
])
summary_writer.add_summary(summary, step)
print("Epoch: [%d]\tmAP: %.4f\tmPrec: %.4f" %
(epoch + 1, mAP, mPrec))
# config for embedding visualization
config = projector.ProjectorConfig()
visual_embedding = config.embeddings.add()
visual_embedding.tensor_name = emb_var.name
visual_embedding.metadata_path = os.path.join(
result_dir, 'metadata_val.tsv')
projector.visualize_embeddings(summary_writer, config)
# save model
saver.save(sess,
os.path.join(result_dir, cfg.name + '.ckpt'),
global_step=step)
def main():
cfg = TrainConfig().parse()
print(cfg.name)
result_dir = os.path.join(
cfg.result_root,
cfg.name + '_' + datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
utils.write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
train_session = cfg.train_session
train_set = prepare_dataset(cfg.feature_root, train_session, cfg.feat,
cfg.label_root)
batch_per_epoch = len(train_set) // cfg.sess_per_batch
val_session = cfg.val_session
val_set = prepare_dataset(cfg.feature_root, val_session, cfg.feat,
cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
# load backbone model
if cfg.network == "tsn":
model = networks.ConvTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "rtsn":
model = networks.ConvRTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
# get the embedding
input_ph = tf.placeholder(tf.float32,
shape=[None, cfg.num_seg, None, None, None])
label_ph = tf.placeholder(tf.float32, shape=[None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model.forward(input_ph, dropout_ph)
if cfg.normalized:
embedding = tf.nn.l2_normalize(model.hidden,
axis=-1,
epsilon=1e-10)
else:
embedding = model.hidden
# variable for visualizing the embeddings
emb_var = tf.Variable([0.0], name='embeddings')
set_emb = tf.assign(emb_var, embedding, validate_shape=False)
# calculated for monitoring all-pair embedding distance
diffs = utils.all_diffs_tf(embedding, embedding)
all_dist = utils.cdist_tf(diffs)
tf.summary.histogram('embedding_dists', all_dist)
metric_loss, num_active, diff, weights, fp, cn = networks.lifted_loss(
all_dist, label_ph, cfg.alpha)
regularization_loss = tf.reduce_sum(
tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES))
total_loss = metric_loss + regularization_loss * cfg.lambda_l2
tf.summary.scalar('active_ratio', num_active)
tf.summary.scalar('learning_rate', lr_ph)
train_op = utils.optimize(total_loss, global_step, cfg.optimizer,
lr_ph, tf.global_variables())
saver = tf.train.Saver(max_to_keep=10)
summary_op = tf.summary.merge_all()
# session iterator for session sampling
feat_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
label_paths_ph = tf.placeholder(tf.string,
shape=[None, cfg.sess_per_batch])
train_data = session_generator(feat_paths_ph,
label_paths_ph,
sess_per_batch=cfg.sess_per_batch,
num_threads=2,
shuffled=False,
preprocess_func=model.prepare_input)
train_sess_iterator = train_data.make_initializable_iterator()
next_train = train_sess_iterator.get_next()
# prepare validation data
val_feats = []
val_labels = []
for session in val_set:
eve_batch, lab_batch, _ = load_data_and_label(
session[0], session[1], model.prepare_input_test
) # use prepare_input_test for testing time
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_feats = np.concatenate(val_feats, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
print("Shape of val_feats: ", val_feats.shape)
# generate metadata.tsv for visualize embedding
with open(os.path.join(result_dir, 'metadata_val.tsv'), 'w') as fout:
for v in val_labels:
fout.write('%d\n' % int(v))
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
summary_writer = tf.summary.FileWriter(result_dir, sess.graph)
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load pretrain model, if needed
if cfg.model_path:
print("Restoring pretrained model: %s" % cfg.model_path)
saver.restore(sess, cfg.model_path)
################## Training loop ##################
epoch = -1
while epoch < cfg.max_epochs - 1:
step = sess.run(global_step, feed_dict=None)
epoch = step // batch_per_epoch
# learning rate schedule, reference: "In defense of Triplet Loss"
if epoch < cfg.static_epochs:
learning_rate = cfg.learning_rate
else:
learning_rate = cfg.learning_rate * \
0.001**((epoch-cfg.static_epochs)/(cfg.max_epochs-cfg.static_epochs))
# prepare data for this epoch
random.shuffle(train_set)
feat_paths = [path[0] for path in train_set]
label_paths = [path[1] for path in train_set]
# reshape a list to list of list
# interesting hacky code from: https://stackoverflow.com/questions/10124751/convert-a-flat-list-to-list-of-list-in-python
feat_paths = list(zip(*[iter(feat_paths)] *
cfg.sess_per_batch))
label_paths = list(
zip(*[iter(label_paths)] * cfg.sess_per_batch))
sess.run(train_sess_iterator.initializer,
feed_dict={
feat_paths_ph: feat_paths,
label_paths_ph: label_paths
})
# for each epoch
batch_count = 1
while True:
try:
# First, sample sessions for a batch
start_time_select = time.time()
eve, se, lab = sess.run(next_train)
select_time1 = time.time() - start_time_select
# Second, select samples for a batch
batch_idx = select_batch(lab, cfg.batch_size)
eve = eve[batch_idx]
lab = lab[batch_idx]
# Third, perform training on a batch
start_time_train = time.time()
err, _, step, summ, diff_v, weights_v, fp_v, cn_v, dist_v = sess.run(
[
total_loss, train_op, global_step, summary_op,
diff, weights, fp, cn, all_dist
],
feed_dict={
input_ph: eve,
dropout_ph: cfg.keep_prob,
label_ph: np.squeeze(lab),
lr_ph: learning_rate
})
train_time = time.time() - start_time_train
print ("Epoch: [%d][%d/%d]\tEvent num: %d\tSelect_time: %.3f\tTrain_time: %.3f\tLoss %.4f" % \
(epoch+1, batch_count, batch_per_epoch, eve.shape[0], select_time1, train_time, err))
summary = tf.Summary(value=[
tf.Summary.Value(tag="train_loss",
simple_value=err),
tf.Summary.Value(tag="select_time1",
simple_value=select_time1)
])
summary_writer.add_summary(summary, step)
summary_writer.add_summary(summ, step)
batch_count += 1
except tf.errors.OutOfRangeError:
print("Epoch %d done!" % (epoch + 1))
break
# validation on val_set
print("Evaluating on validation set...")
val_embeddings, _ = sess.run([embedding, set_emb],
feed_dict={
input_ph: val_feats,
dropout_ph: 1.0
})
mAP, mPrec = utils.evaluate_simple(val_embeddings, val_labels)
summary = tf.Summary(value=[
tf.Summary.Value(tag="Valiation mAP", simple_value=mAP),
tf.Summary.Value(tag="Validation [email protected]",
simple_value=mPrec)
])
summary_writer.add_summary(summary, step)
# config for embedding visualization
config = projector.ProjectorConfig()
visual_embedding = config.embeddings.add()
visual_embedding.tensor_name = emb_var.name
visual_embedding.metadata_path = os.path.join(
result_dir, 'metadata_val.tsv')
projector.visualize_embeddings(summary_writer, config)
# save model
saver.save(sess,
os.path.join(result_dir, cfg.name + '.ckpt'),
global_step=step)
def main():
cfg = TrainConfig().parse()
print (cfg.name)
result_dir = os.path.join(cfg.result_root,
cfg.name+'_'+datetime.strftime(datetime.now(), '%Y%m%d-%H%M%S'))
if not os.path.isdir(result_dir):
os.makedirs(result_dir)
utils.write_configure_to_file(cfg, result_dir)
np.random.seed(seed=cfg.seed)
# prepare dataset
train_session = cfg.train_session
train_set = prepare_multimodal_dataset(cfg.feature_root, train_session, cfg.feat, cfg.label_root)
batch_per_epoch = len(train_set)//cfg.sess_per_batch
labeled_session = train_session[:cfg.label_num]
val_session = cfg.val_session
val_set = prepare_multimodal_dataset(cfg.feature_root, val_session, cfg.feat, cfg.label_root)
# construct the graph
with tf.Graph().as_default():
tf.set_random_seed(cfg.seed)
global_step = tf.Variable(0, trainable=False)
lr_ph = tf.placeholder(tf.float32, name='learning_rate')
subtract_global_step_op = tf.assign(global_step, global_step-1)
####################### Load models here ########################
with tf.variable_scope("modality_core"):
# load backbone model
if cfg.network == "convtsn":
model_emb = networks.ConvTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
elif cfg.network == "convrtsn":
model_emb = networks.ConvRTSN(n_seg=cfg.num_seg, emb_dim=cfg.emb_dim)
else:
raise NotImplementedError
input_ph = tf.placeholder(tf.float32, shape=[None, cfg.num_seg, None, None, None])
dropout_ph = tf.placeholder(tf.float32, shape=[])
model_emb.forward(input_ph, dropout_ph) # for lstm has variable scope
with tf.variable_scope("modality_sensors"):
sensors_emb_dim = 32
model_emb_sensors = networks.RTSN(n_seg=cfg.num_seg, emb_dim=sensors_emb_dim)
input_sensors_ph = tf.placeholder(tf.float32, shape=[None, cfg.num_seg, 8])
model_emb_sensors.forward(input_sensors_ph, dropout_ph)
var_list = {}
for v in tf.global_variables():
if v.op.name.startswith("modality_sensors"):
var_list[v.op.name.replace("modality_sensors/","")] = v
restore_saver_sensors = tf.train.Saver(var_list)
with tf.variable_scope("hallucination_sensors"):
# load backbone model
if cfg.network == "convtsn":
hal_emb_sensors = networks.ConvTSN(n_seg=cfg.num_seg, emb_dim=sensors_emb_dim)
elif cfg.network == "convrtsn":
hal_emb_sensors = networks.ConvRTSN(n_seg=cfg.num_seg, emb_dim=sensors_emb_dim)
else:
raise NotImplementedError
hal_emb_sensors.forward(input_ph, dropout_ph) # for lstm has variable scope
############################# Forward Pass #############################
# Core branch
if cfg.normalized:
embedding = tf.nn.l2_normalize(model_emb.hidden, axis=-1, epsilon=1e-10)
embedding_sensors = tf.nn.l2_normalize(model_emb_sensors.hidden, axis=-1, epsilon=1e-10)
embedding_hal_sensors = tf.nn.l2_normalize(hal_emb_sensors.hidden, axis=-1, epsilon=1e-10)
else:
embedding = model_emb.hidden
embedding_sensors = model_emb_sensors.hidden
embedding_hal_sensors = hal_emb_sensors.hidden
# variable for visualizing the embeddings
emb_var = tf.Variable([0.0], name='embeddings')
set_emb = tf.assign(emb_var, embedding, validate_shape=False)
# calculated for monitoring all-pair embedding distance
diffs = utils.all_diffs_tf(embedding, embedding)
all_dist = utils.cdist_tf(diffs)
tf.summary.histogram('embedding_dists', all_dist)
# split embedding into anchor, positive and negative and calculate triplet loss
anchor, positive, negative = tf.unstack(tf.reshape(embedding, [-1,3,cfg.emb_dim]), 3, 1)
anc_sensors, pos_sensors, neg_sensors = tf.unstack(tf.reshape(embedding_sensors, [-1,3,sensors_emb_dim]), 3, 1)
anc_hal_sensors, pos_hal_sensors, neg_hal_sensors = tf.unstack(tf.reshape(embedding_hal_sensors, [-1,3,sensors_emb_dim]), 3, 1)
# a fusion embedding
anc_fused = tf.concat((anchor, anc_hal_sensors), axis=1)
pos_fused = tf.concat((positive, pos_hal_sensors), axis=1)
neg_fused = tf.concat((negative, neg_hal_sensors), axis=1)
############################# Calculate loss #############################
# triplet loss
metric_loss = networks.triplet_loss(anchor, positive, negative, cfg.alpha) + \
networks.triplet_loss(anc_sensors, pos_sensors, neg_sensors, cfg.alpha) + \
networks.triplet_loss(anc_hal_sensors, pos_hal_sensors, neg_hal_sensors, cfg.alpha) + \
networks.triplet_loss(anc_fused, pos_fused, neg_fused, cfg.alpha)
# hallucination loss (regression loss)
hal_loss = tf.nn.l2_loss(embedding_sensors - embedding_hal_sensors)
regularization_loss = tf.reduce_sum(tf.get_collection(tf.GraphKeys.REGULARIZATION_LOSSES))
# use lambda_multimodal for hal_loss
lambda_metric_ph = tf.placeholder(tf.float32, shape=[])
lambda_hal_ph = tf.placeholder(tf.float32, shape=[])
total_loss = lambda_metric_ph * metric_loss + lambda_hal_ph * hal_loss + regularization_loss * cfg.lambda_l2
tf.summary.scalar('learning_rate', lr_ph)
train_op = utils.optimize(total_loss, global_step, cfg.optimizer,
lr_ph, tf.global_variables())
saver = tf.train.Saver(max_to_keep=10)
summary_op = tf.summary.merge_all() # not logging histogram of variables because it will cause problem when only unimodal_train_op is called
#########################################################################
# session iterator for session sampling
feat_paths_ph = tf.placeholder(tf.string, shape=[None, cfg.sess_per_batch])
feat2_paths_ph = tf.placeholder(tf.string, shape=[None, cfg.sess_per_batch])
label_paths_ph = tf.placeholder(tf.string, shape=[None, cfg.sess_per_batch])
train_data = multimodal_session_generator(feat_paths_ph, feat2_paths_ph, label_paths_ph, sess_per_batch=cfg.sess_per_batch, num_threads=2, shuffled=False, preprocess_func=[model_emb.prepare_input, model_emb_sensors.prepare_input])
train_sess_iterator = train_data.make_initializable_iterator()
next_train = train_sess_iterator.get_next()
# prepare validation data
val_sess = []
val_feats = []
val_feats2 = []
val_labels = []
val_boundaries = []
for session in val_set:
session_id = os.path.basename(session[1]).split('_')[0]
eve_batch, lab_batch, boundary = load_data_and_label(session[0], session[-1], model_emb.prepare_input_test) # use prepare_input_test for testing time
val_feats.append(eve_batch)
val_labels.append(lab_batch)
val_sess.extend([session_id]*eve_batch.shape[0])
val_boundaries.extend(boundary)
eve2_batch, _,_ = load_data_and_label(session[1], session[-1], utils.mean_pool_input)
val_feats2.append(eve2_batch)
val_feats = np.concatenate(val_feats, axis=0)
val_feats2 = np.concatenate(val_feats2, axis=0)
val_labels = np.concatenate(val_labels, axis=0)
print ("Shape of val_feats: ", val_feats.shape)
# generate metadata.tsv for visualize embedding
with open(os.path.join(result_dir, 'metadata_val.tsv'), 'w') as fout:
fout.write('id\tlabel\tsession_id\tstart\tend\n')
for i in range(len(val_sess)):
fout.write('{0}\t{1}\t{2}\t{3}\t{4}\n'.format(i, val_labels[i,0], val_sess[i],
val_boundaries[i][0], val_boundaries[i][1]))
#########################################################################
# Start running the graph
if cfg.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = cfg.gpu
gpu_options = tf.GPUOptions(allow_growth=True)
sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options))
summary_writer = tf.summary.FileWriter(result_dir, sess.graph)
with sess.as_default():
sess.run(tf.global_variables_initializer())
# load pretrain model, if needed
if cfg.model_path:
print ("Restoring pretrained model: %s" % cfg.model_path)
saver.restore(sess, cfg.model_path)
print ("Restoring sensors model: %s" % cfg.sensors_path)
restore_saver_sensors.restore(sess, cfg.sensors_path)
################## Training loop ##################
epoch = -1
while epoch < cfg.max_epochs-1:
step = sess.run(global_step, feed_dict=None)
epoch = step // batch_per_epoch
# learning rate schedule, reference: "In defense of Triplet Loss"
if epoch < cfg.static_epochs:
learning_rate = cfg.learning_rate
else:
learning_rate = cfg.learning_rate * \
0.001**((epoch-cfg.static_epochs)/(cfg.max_epochs-cfg.static_epochs))
# prepare data for this epoch
random.shuffle(train_set)
paths = list(zip(*[iter(train_set)]*cfg.sess_per_batch))
feat_paths = [[p[0] for p in path] for path in paths]
feat2_paths = [[p[1] for p in path] for path in paths]
label_paths = [[p[-1] for p in path] for path in paths]
sess.run(train_sess_iterator.initializer, feed_dict={feat_paths_ph: feat_paths,
feat2_paths_ph: feat2_paths,
label_paths_ph: label_paths})
# for each epoch
batch_count = 1
while True:
try:
##################### Data loading ########################
start_time = time.time()
eve, eve_sensors, lab, batch_sess = sess.run(next_train)
load_time = time.time() - start_time
##################### Triplet selection #####################
start_time = time.time()
# for labeled sessions, use facenet sampling
eve_labeled = []
eve_sensors_labeled = []
lab_labeled = []
for i in range(eve.shape[0]):
if batch_sess[i,0] in labeled_session:
eve_labeled.append(eve[i])
eve_sensors_labeled.append(eve_sensors[i])
lab_labeled.append(lab[i])
if len(eve_labeled): # if labeled sessions exist
eve_labeled = np.concatenate(eve_labeled, axis=0)
eve_sensors_labeled = np.concatenate(eve_sensors_labeled, axis=0)
lab_labeled = np.concatenate(lab_labeled, axis=0)
# Get the embeddings of all events
eve_embedding = np.zeros((eve_labeled.shape[0], cfg.emb_dim), dtype='float32')
for start, end in zip(range(0, eve_labeled.shape[0], cfg.batch_size),
range(cfg.batch_size, eve_labeled.shape[0]+cfg.batch_size, cfg.batch_size)):
end = min(end, eve_labeled.shape[0])
emb = sess.run(embedding, feed_dict={input_ph: eve_labeled[start:end], dropout_ph: 1.0})
eve_embedding[start:end] = np.copy(emb)
# sample triplets within sampled sessions
triplet_input_idx, negative_count = utils.select_triplets_facenet(lab_labeled,eve_embedding,cfg.triplet_per_batch,cfg.alpha,num_negative=cfg.num_negative)
if triplet_input_idx is None:
continue
triplet_input = eve_labeled[triplet_input_idx]
sensors_input = eve_sensors_labeled[triplet_input_idx]
if len(triplet_input.shape) > 5: # debugging
pdb.set_trace()
# for all sessions
temp_num = (eve.shape[0] // 3) * 3 # for triplet shape
all_triplet_input = eve[:temp_num]
all_sensors_input = eve_sensors[:temp_num]
select_time = time.time() - start_time
##################### Start training ########################
# supervised initialization
if epoch < cfg.multimodal_epochs:
err, metric_err, hal_err, _, step, summ = sess.run(
[total_loss, metric_loss, hal_loss, train_op, global_step, summary_op],
feed_dict = {input_ph: triplet_input,
input_sensors_ph: sensors_input,
dropout_ph: cfg.keep_prob,
lr_ph: learning_rate,
lambda_metric_ph: 1.0, # only metric learning
lambda_hal_ph: 0.0})
else:
# supervised training if labeled sessions available
if len(eve_labeled):
err, metric_err, hal_err, _, step, summ = sess.run(
[total_loss, metric_loss, hal_loss, train_op, global_step, summary_op],
feed_dict = {input_ph: triplet_input,
input_sensors_ph: sensors_input,
dropout_ph: cfg.keep_prob,
lr_ph: learning_rate,
lambda_metric_ph: 1.0,
lambda_hal_ph: cfg.lambda_multimodal})
# unsupervised learning on all sessions
if len(eve_labeled):
sess.run(subtract_global_step_op)
err, metric_err, hal_err, _, step, summ = sess.run(
[total_loss, metric_loss, hal_loss, train_op, global_step, summary_op],
feed_dict = {input_ph: all_triplet_input,
input_sensors_ph: all_sensors_input,
dropout_ph: cfg.keep_prob,
lr_ph: learning_rate,
lambda_metric_ph: 0.0, # no metric learning
lambda_hal_ph: 1.0}) # only hal loss
print ("%s\tEpoch: [%d][%d/%d]\tEvent num: %d\tTriplet num: %d\tLoad time: %.3f\tSelect time: %.3f\tMetric Loss %.4f\tHal Loss %.4f" % \
(cfg.name, epoch+1, batch_count, batch_per_epoch, eve.shape[0], triplet_input.shape[0]//3, load_time, select_time, metric_err, hal_err))
summary = tf.Summary(value=[tf.Summary.Value(tag="train_loss", simple_value=err),
tf.Summary.Value(tag="negative_count", simple_value=negative_count),
tf.Summary.Value(tag="metric_loss", simple_value=metric_err),
tf.Summary.Value(tag="hallucination_loss", simple_value=hal_err)])
summary_writer.add_summary(summary, step)
summary_writer.add_summary(summ, step)
batch_count += 1
except tf.errors.OutOfRangeError:
print ("Epoch %d done!" % (epoch+1))
break
# validation on val_set
print ("Evaluating on validation set...")
val_embeddings, _ = sess.run([embedding, set_emb],
feed_dict = {input_ph: val_feats,
dropout_ph: 1.0})
mAP, mPrec = utils.evaluate_simple(val_embeddings, val_labels)
summary = tf.Summary(value=[tf.Summary.Value(tag="Valiation mAP", simple_value=mAP),
tf.Summary.Value(tag="Validation [email protected]", simple_value=mPrec)])
summary_writer.add_summary(summary, step)
print ("Epoch: [%d]\tmAP: %.4f\tmPrec: %.4f" % (epoch+1,mAP,mPrec))
# config for embedding visualization
config = projector.ProjectorConfig()
visual_embedding = config.embeddings.add()
visual_embedding.tensor_name = emb_var.name
visual_embedding.metadata_path = os.path.join(result_dir, 'metadata_val.tsv')
projector.visualize_embeddings(summary_writer, config)
# save model
saver.save(sess, os.path.join(result_dir, cfg.name+'.ckpt'), global_step=step)
