def tissue_ids(self):
result = {}
url = data_formats.urls['giant']['init_url']
html = dataio.curl(url, silent=False)
soup = bs4.BeautifulSoup(html)
for tis in soup.find('select', {'id': 'tissue'}).findAll('option'):
result[int(tis.attrs['value'])] = tis.text
return result
def query(self, tissue, entrez):
url = data_formats.urls['giant']['url'] % (
tissue, 'entrez=%s' % '&entrez='.join([str(e) for e in entrez]))
data = dataio.curl(url, silent=True, cache=False)
self.dump.append({
'tissue': tissue,
'entrez': entrez,
'url': url,
'data': json.loads(data)
})
return data if data is None else json.loads(data)
def query(self, tissue, entrez):
url = data_formats.urls['giant']['url'] % (
tissue, 'entrez=%s' % '&entrez='.join([str(e) for e in entrez]))
data = dataio.curl(url,
silent=True,
cache=False,
debug=self.debug,
override_post=True)
if self.debug:
self.trace['url'] = url
self.trace['raw'] = data
self.trace['result'] = json.loads(data)
return data if data is None else json.loads(data)