def test_not_property(client, submitter, pg_driver_clean, cgci_blgsp):
post_example_entities_together(client, pg_driver_clean, submitter)
with pg_driver_clean.session_scope() as s:
s.merge(
models.Case('case1', submitter_id='s1', project_id='CGCI-BLGSP'))
s.merge(
models.Case('case2', submitter_id='s2', project_id='CGCI-BLGSP'))
r = client.post(path,
headers=submitter,
data=json.dumps({
'query':
"""{
case (not: {submitter_id: "s1"}, submitter_id: ["s1", "s2"]) {
id submitter_id
}
}""",
}))
assert r.json == {
"data": {
'case': [
{
"id": "case2",
"submitter_id": "s2"
},
],
}
}, r.data
def test_with_path_to_any(client, submitter, pg_driver_clean, cgci_blgsp):
post_example_entities_together(client, pg_driver_clean, submitter)
with pg_driver_clean.session_scope() as s:
props = dict(project_id='CGCI-BLGSP', state='validated')
case1 = models.Case('case1', submitter_id='case1', **props)
case2 = models.Case('case2', submitter_id='case2', **props)
sample1 = models.Sample('sample1', submitter_id='sample1', **props)
sample2 = models.Sample('sample2', submitter_id='sample2', **props)
case1.samples = [sample1]
case2.samples = [sample2]
s.add_all((case1, case2))
r = client.post(path,
headers=submitter,
data=json.dumps({
'query':
"""query Test($sampleId1: String, $sampleId2: String) {
a: _case_count (with_path_to_any: [
{type: "sample", submitter_id: $sampleId1}
{type: "sample", submitter_id: $sampleId2}
])
b: _case_count (with_path_to_any: [
{type: "sample", submitter_id: $sampleId1}
])
c: _case_count (with_path_to_any: [
{type: "sample", submitter_id: $sampleId2}
])
d: _case_count (with_path_to: [
{type: "sample", submitter_id: $sampleId1}
])
e: _case_count (with_path_to: [
{type: "sample", submitter_id: $sampleId2}
])
f: _case_count (with_path_to: [
{type: "sample", submitter_id: $sampleId1}
{type: "sample", submitter_id: $sampleId2}
])
}""",
'variables': {
"sampleId1": sample1.submitter_id,
"sampleId2": sample2.submitter_id,
}
}))
assert r.status_code == 200, r.data
assert r.json == {
'data': {
'a': 2,
'b': 1,
'c': 1,
'd': 1,
'e': 1,
'f': 0,
}
}, r.data
def test_auth_node_subclass(client, submitter, pg_driver_clean, cgci_blgsp):
with pg_driver_clean.session_scope():
blgsp = pg_driver_clean.nodes(models.Project).props(code='BLGSP').one()
blgsp.cases += [models.Case('id1', project_id='CGCI-BLGSP')]
blgsp.cases += [models.Case('id2', project_id='OTHER-OTHER')]
r = client.post(path,
headers=submitter,
data=json.dumps(
{'query': """query Test { case { project_id }}"""}))
with pg_driver_clean.session_scope():
assert len(r.json['data']['case']) == 1
def test_export_all_node_types(client, pg_driver, cgci_blgsp, submitter):
post_example_entities_together(client, submitter)
with pg_driver.session_scope() as s:
case = pg_driver.nodes(md.Case).first()
new_case = md.Case(str(uuid.uuid4()))
new_case.props = case.props
new_case.submitter_id = 'case-2'
s.add(new_case)
case_count = pg_driver.nodes(md.Case).count()
def test_export_all_node_types_json(client, pg_driver, cgci_blgsp,
require_index_exists_off, submitter):
post_example_entities_together(client, submitter, extended_data_fnames)
with pg_driver.session_scope() as s:
case = pg_driver.nodes(md.Case).first()
new_case = md.Case(str(uuid.uuid4()))
new_case.props = case.props
new_case.submitter_id = "case-2"
s.add(new_case)
case_count = pg_driver.nodes(md.Case).count()
def test_property_lists(client, submitter, pg_driver_clean, cgci_blgsp):
utils.reset_transactions(pg_driver_clean)
post_example_entities_together(client, pg_driver_clean, submitter)
with pg_driver_clean.session_scope() as s:
s.merge(
models.Case('case1', submitter_id='s1', project_id='CGCI-BLGSP'))
s.merge(
models.Case('case2', submitter_id='s2', project_id='CGCI-BLGSP'))
data = json.dumps({
'query':
"""{
case (submitter_id: ["s1", "s2"]) {
id submitter_id
},
c1: _transaction_log_count(project_id: ["CGCI-BLGSP"])
c2: _transaction_log_count(project_id: ["CGCI-FAKE"])
c3: _transaction_log_count(project_id: "CGCI-BLGSP")
}""",
})
response = client.post(path, headers=submitter, data=data)
# fix for the unicode artifacts
expected_json = json.loads(
json.dumps({
"data": {
'case': [
{
"id": "case1",
"submitter_id": "s1"
},
{
"id": "case2",
"submitter_id": "s2"
},
],
'c1':
1,
'c2':
0,
'c3':
1,
}
}))
assert response.json == expected_json, response.data
def test_without_path(client, submitter, pg_driver_clean, cgci_blgsp):
post_example_entities_together(client, pg_driver_clean, submitter)
with pg_driver_clean.session_scope():
blgsp = pg_driver_clean.nodes(models.Project).props(code='BLGSP').one()
blgsp.cases += [models.Case('id1', project_id='CGCI-BLGSP')]
data = json.dumps({
'query':
"""
query Test {
with : _case_count(with_path_to : {type: "aliquot"})
without: _case_count(without_path_to: {type: "aliquot"})
total : _case_count
}
"""
})
r = client.post(path, headers=submitter, data=data)
print r.data
data = r.json['data']
assert data['with']
assert data['without']
assert data['with'] + data['without'] == data['total']
