if(map_column > -1):
try:
plate_id=None
well_id=None
value = util.convertdata(r[map_column].strip())
if(value != None and value != '' ):
plate_id = util.convertdata(value,int)
value = util.convertdata(r[map_column+1].strip())
if(value != None and value != '' ):
well_id = value
else:
raise Exception(str(('Must define both plate and well (not just plate), row', current_row)))
dataRecord.plate = plate_id
dataRecord.well = well_id
try:
# TODO: what if the plate/well does not correlate to a librarymapping? i.e. if this is the plate/well for a cell/protein study?
# For now, the effect of the followinlogger.info(str((g logic is that plate/well either maps a librarymapping, or is a an arbitrary plate/well
dataRecord.library_mapping = LibraryMapping.objects.get(plate=plate_id,well=well_id)
if(dataRecord.smallmolecule != None):
if(dataRecord.smallmolecule != None and dataRecord.library_mapping.smallmolecule_batch != None and (dataRecord.smallmolecule != dataRecord.library_mapping.smallmolecule_batch.smallmolecule)):
raise Exception(str(('SmallMolecule does not match the libraryMapping.smallmolecule_batch.smallmolecule pointed to by the plate/well:',plate_id,well_id,
dataRecord.smallmolecule,dataRecord.library_mapping.smallmolecule_batch.smallmolecule,
r,'row',current_row)))
elif(dataRecord.library_mapping.smallmolecule_batch != None):
dataRecord.smallmolecule = dataRecord.library_mapping.smallmolecule_batch.smallmolecule
except ObjectDoesNotExist, e:
logger.warn(str(('No librarymapping defined (plate/well do not point to a librarymapping), row', current_row)))
mapped = True
except Exception, e:
