def check_sgd_gmm(D, K, N, plot=False, device=None):
if not device:
device = torch.device('cpu')
means = (np.random.rand(K, D) * 20) - 10
q = (2 * np.random.randn(K, D, D))
covars = np.matmul(q.swapaxes(1, 2), q)
X = np.empty((N, K, D))
for i in range(K):
X[:, i, :] = np.random.multivariate_normal(
mean=means[i, :],
cov=covars[i, :, :],
size=N
)
X_data = [torch.Tensor(X.reshape(-1, D).astype(np.float32))]
gmm = SGDGMM(K, D, device=device, epochs=200)
gmm.fit(X_data)
if plot:
fig, ax = plt.subplots()
for i in range(K):
sc = ax.scatter(
X[:, i, 0],
X[:, i, 1],
alpha=0.2,
marker='x',
label='Cluster {}'.format(i)
)
plot_covariance(
means[i, :],
covars[i, :, :],
ax,
color=sc.get_facecolor()[0]
)
sc = ax.scatter(
gmm.means[:, 0],
gmm.means[:, 1],
marker='+',
label='Fitted Gaussians'
)
for i in range(K):
plot_covariance(
gmm.means[i, :],
gmm.covars[i, :, :],
ax,
color=sc.get_facecolor()[0]
)
ax.legend()
plt.show()
def check_deconv_gmm(D, K, N, plot=False, device=None):
if not device:
device = torch.device('cpu')
means = (np.random.rand(K, D) * 20) - 10
q = (2 * np.random.randn(K, D, D))
covars = np.matmul(q.swapaxes(1, 2), q)
qn = (0.5 * np.random.randn(N, K, D, D))
noise_covars = np.matmul(qn.swapaxes(2, 3), qn)
X = np.empty((N, K, D))
for i in range(K):
X[:, i, :] = np.random.multivariate_normal(mean=means[i, :],
cov=covars[i, :, :],
size=N)
for j in range(N):
X[j,
i, :] += np.random.multivariate_normal(mean=np.zeros(D),
cov=noise_covars[j,
i, :, :])
data = (torch.Tensor(X.reshape(-1, D).astype(np.float32)).to(device),
torch.Tensor(noise_covars.reshape(-1, D, D).astype(
np.float32)).to(device))
gmm = DeconvGMM(K, D, max_iters=1000, device=device)
gmm.fit(data)
if plot:
fig, ax = plt.subplots()
for i in range(K):
sc = ax.scatter(X[:, i, 0],
X[:, i, 1],
alpha=0.2,
marker='x',
label='Cluster {}'.format(i))
plot_covariance(means[i, :],
covars[i, :, :],
ax,
color=sc.get_facecolor()[0])
sc = ax.scatter(gmm.means[:, 0],
gmm.means[:, 1],
marker='+',
label='Fitted Gaussians')
for i in range(K):
plot_covariance(gmm.means[i, :],
gmm.covars[i, :, :],
ax,
color=sc.get_facecolor()[0])
ax.legend()
plt.show()
def check_online_deconv_gmm(D, K, N, plot=False, device=None, verbose=False):
if not device:
device = torch.device('cpu')
data, params = generate_data(D, K, N)
X_train, nc_train, X_test, nc_test = data
means, covars = params
train_data = DeconvDataset(
torch.Tensor(X_train.reshape(-1, D).astype(np.float32)),
torch.Tensor(nc_train.reshape(-1, D, D).astype(np.float32)))
test_data = DeconvDataset(
torch.Tensor(X_test.reshape(-1, D).astype(np.float32)),
torch.Tensor(nc_test.reshape(-1, D, D).astype(np.float32)))
gmm = OnlineDeconvGMM(K,
D,
device=device,
batch_size=500,
step_size=1e-1,
restarts=1,
epochs=20,
k_means_iters=20,
lr_step=10,
w=1e-3)
gmm.fit(train_data, val_data=test_data, verbose=verbose)
train_score = gmm.score_batch(train_data)
test_score = gmm.score_batch(test_data)
print('Training score: {}'.format(train_score))
print('Test score: {}'.format(test_score))
if plot:
fig, ax = plt.subplots()
ax.plot(gmm.train_ll_curve, label='Training LL')
ax.plot(gmm.val_ll_curve, label='Validation LL')
ax.legend()
plt.show()
fig, ax = plt.subplots()
for i in range(K):
sc = ax.scatter(X_train[:, i, 0],
X_train[:, i, 1],
alpha=0.2,
marker='x',
label='Cluster {}'.format(i))
plot_covariance(means[i, :],
covars[i, :, :],
ax,
color=sc.get_facecolor()[0])
sc = ax.scatter(gmm.means[:, 0],
gmm.means[:, 1],
marker='+',
label='Fitted Gaussians')
for i in range(K):
plot_covariance(gmm.means[i, :],
gmm.covars[i, :, :],
ax,
color=sc.get_facecolor()[0])
ax.legend()
plt.show()
svi.model.load_state_dict(torch.load(p))
z_samples = svi.sample_prior(10000)
x_samples = svi.sample_posterior(test_point, 10000)
ax_lim = (-4, 4)
fig, axes = plt.subplots(1, 2, figsize=(3, 1.5), sharex=True, sharey=True)
corner.hist2d(z_samples[0, :N, 0].numpy(),
z_samples[0, :N, 1].numpy(),
ax=axes[0])
corner.hist2d(x_samples[1, :N, 0].numpy(),
x_samples[1, :N, 1].numpy(),
ax=axes[1])
plot_covariance(mean[1], cov[1], ax=axes[1], color='r')
axes[0].set_title(r'$p_{\theta}(\mathbf{v})$')
axes[1].set_title(r'$q_{\phi}(\mathbf{v})$')
axes[0].set_xticks([])
axes[0].set_yticks([])
axes[1].set_xticks([])
axes[1].set_yticks([])
axes[1].set_xlim(ax_lim)
axes[1].set_ylim(ax_lim)
fig.tight_layout()
fig.savefig('additional_{}.pdf'.format(i))
