def build_FFF(N, dealias, dtype):
c = d3.CartesianCoordinates('x', 'y', 'z')
d = d3.Distributor(c, dtype=dtype)
if dtype == np.complex128:
xb = d3.ComplexFourier(c.coords[0],
size=N,
bounds=(0, Lx),
dealias=dealias)
yb = d3.ComplexFourier(c.coords[1],
size=N,
bounds=(0, Ly),
dealias=dealias)
zb = d3.ComplexFourier(c.coords[2],
size=N,
bounds=(0, Lz),
dealias=dealias)
elif dtype == np.float64:
xb = d3.RealFourier(c.coords[0],
size=N,
bounds=(0, Lx),
dealias=dealias)
yb = d3.RealFourier(c.coords[1],
size=N,
bounds=(0, Ly),
dealias=dealias)
zb = d3.RealFourier(c.coords[2],
size=N,
bounds=(0, Lz),
dealias=dealias)
b = (xb, yb, zb)
x = xb.local_grid(dealias)
y = yb.local_grid(dealias)
z = zb.local_grid(dealias)
r = (x, y, z)
return c, d, b, r
from dedalus.extras import flow_tools
logger.info(args)
logger.info("saving data in: {}".format(data_dir))
# this assumes h_bot=1, grad_φ = (γ-1)/γ (or L=Hρ)
h_bot = 1
h_slope = -1 / (1 + m)
grad_φ = (γ - 1) / γ
n_h = float(args['--n_h'])
Lz = -1 / h_slope * (1 - np.exp(-n_h))
Lx = float(args['--aspect']) * Lz
dealias = 2
c = de.CartesianCoordinates('x', 'z')
d = de.Distributor(c, dtype=np.float64)
xb = de.RealFourier(c.coords[0], size=nx, bounds=(0, Lx), dealias=dealias)
zb = de.ChebyshevT(c.coords[1], size=nz, bounds=(0, Lz), dealias=dealias)
b = (xb, zb)
x = xb.local_grid(1)
z = zb.local_grid(1)
# Fields
T = d.Field(name='T', bases=b)
Υ = d.Field(name='Υ', bases=b)
s = d.Field(name='s', bases=b)
u = d.VectorField(c, name='u', bases=b)
# Taus
zb1 = zb.clone_with(a=zb.a + 1, b=zb.b + 1)
logger.info("Ma2 = {:.3g}, Pr = {:.3g}, γ = {:.3g}, ε={:.3g}".format(
Ma2, Pr, γ, ε))
# this assumes h_bot=1, grad_φ = (γ-1)/γ (or L=Hρ)
h_bot = 1
# generally, h_slope = -1/(1+m)
# start in an adibatic state, heat from there
h_slope = -1 / (1 + m_ad)
grad_φ = (γ - 1) / γ
n_h = float(args['--n_h'])
Lz = -1 / h_slope * (1 - np.exp(-n_h))
print(n_h, Lz, h_slope)
dealias = 2
c = de.CartesianCoordinates('z')
d = de.Distributor(c, dtype=np.float64)
zb = de.ChebyshevT(c.coords[-1], size=nz, bounds=(0, Lz), dealias=dealias)
b = zb
z = zb.local_grid(1)
zd = zb.local_grid(dealias)
# Fields
θ = d.Field(name='θ', bases=b)
Υ = d.Field(name='Υ', bases=b)
s = d.Field(name='s', bases=b)
u = d.VectorField(c, name='u', bases=b)
# Taus
zb1 = zb.clone_with(a=zb.a + 1, b=zb.b + 1)
zb2 = zb.clone_with(a=zb.a + 2, b=zb.b + 2)
import logging
logger = logging.getLogger(__name__)
# Parameters
Lx, Lz = 4, 1
Nx, Nz = 256, 64
Rayleigh = 2e6
Prandtl = 1
dealias = 3 / 2
stop_sim_time = 50
timestepper = d3.RK222
max_timestep = 0.125
dtype = np.float64
# Bases
coords = d3.CartesianCoordinates('x', 'z')
dist = d3.Distributor(coords, dtype=dtype)
xbasis = d3.RealFourier(coords['x'], size=Nx, bounds=(0, Lx), dealias=dealias)
zbasis = d3.ChebyshevT(coords['z'], size=Nz, bounds=(0, Lz), dealias=dealias)
# Fields
p = dist.Field(name='p', bases=(xbasis, zbasis))
b = dist.Field(name='b', bases=(xbasis, zbasis))
u = dist.VectorField(coords, name='u', bases=(xbasis, zbasis))
tau_p = dist.Field(name='tau_p')
tau_b1 = dist.Field(name='tau_b1', bases=xbasis)
tau_b2 = dist.Field(name='tau_b2', bases=xbasis)
tau_u1 = dist.VectorField(coords, name='tau_u1', bases=xbasis)
tau_u2 = dist.VectorField(coords, name='tau_u2', bases=xbasis)
# Substitutions
def heated_polytrope(nz, γ, ε, n_h,
tolerance = 1e-8,
ncc_cutoff = 1e-10,
dealias = 2,
verbose=False):
import dedalus.public as de
cP = γ/(γ-1)
m_ad = 1/(γ-1)
s_c_over_c_P = scrS = 1 # s_c/c_P = 1
logger.info("γ = {:.3g}, ε={:.3g}".format(γ, ε))
# this assumes h_bot=1, grad_φ = (γ-1)/γ (or L=Hρ)
h_bot = 1
# generally, h_slope = -1/(1+m)
# start in an adibatic state, heat from there
h_slope = -1/(1+m_ad)
grad_φ = (γ-1)/γ
Lz = -1/h_slope*(1-np.exp(-n_h))
print(n_h, Lz, h_slope)
c = de.CartesianCoordinates('z')
d = de.Distributor(c, dtype=np.float64)
zb = de.ChebyshevT(c.coords[-1], size=nz, bounds=(0, Lz), dealias=dealias)
b = zb
z = zb.local_grid(1)
zd = zb.local_grid(dealias)
# Fields
θ = d.Field(name='θ', bases=b)
Υ = d.Field(name='Υ', bases=b)
s = d.Field(name='s', bases=b)
u = d.VectorField(c, name='u', bases=b)
# Taus
lift_basis = zb.clone_with(a=zb.a+2, b=zb.b+2)
lift = lambda A, n: de.Lift(A, lift_basis, n)
lift_basis1 = zb.clone_with(a=zb.a+1, b=zb.b+1)
lift1 = lambda A, n: de.Lift(A, lift_basis1, n)
τ_h1 = d.VectorField(c,name='τ_h1')
τ_s1 = d.Field(name='τ_s1')
τ_s2 = d.Field(name='τ_s2')
# Parameters and operators
lap = lambda A: de.Laplacian(A, c)
grad = lambda A: de.Gradient(A, c)
ez, = c.unit_vector_fields(d)
# NLBVP goes here
# intial guess
h0 = d.Field(name='h0', bases=zb)
θ0 = d.Field(name='θ0', bases=zb)
Υ0 = d.Field(name='Υ0', bases=zb)
s0 = d.Field(name='s0', bases=zb)
structure = {'h':h0,'s':s0,'θ':θ0,'Υ':Υ0}
for key in structure:
structure[key].change_scales(dealias)
h0['g'] = h_bot + zd*h_slope #(Lz+1)-z
θ0['g'] = np.log(h0).evaluate()['g']
Υ0['g'] = (m_ad*θ0).evaluate()['g']
s0['g'] = 0
problem = de.NLBVP([h0, s0, Υ0, τ_s1, τ_s2, τ_h1])
problem.add_equation((grad(h0) + lift1(τ_h1,-1),
-grad_φ*ez + h0*grad(s0)))
problem.add_equation((-lap(h0)
+ lift(τ_s1,-1) + lift(τ_s2,-2), ε))
problem.add_equation(((γ-1)*Υ0 + s_c_over_c_P*γ*s0, np.log(h0)))
problem.add_equation((Υ0(z=0), 0))
problem.add_equation((h0(z=0), 1))
problem.add_equation((h0(z=Lz), np.exp(-n_h)))
# Solver
solver = problem.build_solver(ncc_cutoff=ncc_cutoff)
pert_norm = np.inf
while pert_norm > tolerance:
solver.newton_iteration()
pert_norm = sum(pert.allreduce_data_norm('c', 2) for pert in solver.perturbations)
logger.info('current perturbation norm = {:.3g}'.format(pert_norm))
if verbose:
import matplotlib.pyplot as plt
fig, ax = plt.subplots()
ax2 = ax.twinx()
ax.plot(zd, h0['g'], linestyle='dashed', color='xkcd:dark grey', label='h')
ax2.plot(zd, np.log(h0).evaluate()['g'], label=r'$\ln h$')
ax2.plot(zd, Υ0['g'], label=r'$\ln \rho$')
ax2.plot(zd, s0['g'], color='xkcd:brick red', label=r'$s$')
ax.legend()
ax2.legend()
fig.savefig('heated_polytrope_nh{}_eps{}_gamma{:.3g}.pdf'.format(n_h,ε,γ))
for key in structure:
structure[key].change_scales(1)
return structure