def test_compute_quals_numerical_stability(self, probs, call, expected_gq):
max_qual = round(
genomics_math.ptrue_to_bounded_phred(1.0),
postprocess_variants._QUAL_PRECISION)
gq, qual = postprocess_variants.compute_quals(probs, call)
self.assertEquals(expected_gq, gq)
self.assertEquals(max_qual, qual)
def test_compute_quals_numerical_stability(self, probs, call, expected_gq):
max_qual = round(
genomics_math.ptrue_to_bounded_phred(1.0),
postprocess_variants._QUAL_PRECISION)
gq, qual = postprocess_variants.compute_quals(probs, call)
self.assertEquals(expected_gq, gq)
self.assertEquals(max_qual, qual)
def test_compute_quals(self, probs, call, expected_gq, expected_qual): gq, qual = postprocess_variants.compute_quals(probs, call) self.assertEquals(gq, expected_gq) self.assertAlmostEquals(qual, expected_qual, places=6)
def test_compute_quals(self, probs, call, expected_gq, expected_qual): gq, qual = postprocess_variants.compute_quals(probs, call) self.assertEquals(gq, expected_gq) self.assertAlmostEquals(qual, expected_qual, places=6)