print 'FAIL: dials_regression not configured'
raise
# The XDS values
xds_sigma_d = 0.060
xds_sigma_m = 0.154
# Read the reflections file
filename = os.path.join(dials_regression,
'centroid_test_data', 'reflections.h5')
#filename = os.path.join('/home/upc86896/Data/X1_strong_M1S1_1_', 'reflections.h5')
handle = NexusFile(filename, 'r')
# Get the reflection list
print 'Reading reflections.'
reflections = handle.get_reflections()
print 'Read {0} reflections.'.format(len(reflections))
# Read images
template = os.path.join(dials_regression,
'centroid_test_data', 'centroid_*.cbf')
#template = os.path.join('/home/upc86896/Data/X1_strong_M1S1_1_', 'X1_strong_M1S1_1_*.cbf')
filenames = glob(template)
# Load the sweep
print 'Loading sweep'
sweep = SweepFactory.sweep(filenames)[0:10]
print 'Loaded sweep of {0} images.'.format(len(sweep))
# Select the strong pixels to use in the divergence calculation
print 'Select the strong pixels from the images.'
print("FAIL: dials_regression not configured")
raise
# The XDS values
xds_sigma_d = 0.060
xds_sigma_m = 0.154
# Read the reflections file
filename = os.path.join(dials_regression, "centroid_test_data",
"reflections.h5")
# filename = os.path.join('/home/upc86896/Data/X1_strong_M1S1_1_', 'reflections.h5')
handle = NexusFile(filename, "r")
# Get the reflection list
print("Reading reflections.")
predicted = handle.get_reflections()
print("Read {0} reflections.".format(len(predicted)))
# Read images
template = os.path.join(dials_regression, "centroid_test_data",
"centroid_*.cbf")
# template = os.path.join('/home/upc86896/Data/X1_strong_M1S1_1_', 'X1_strong_M1S1_1_*.cbf')
filenames = glob(template)
# Load the sweep
print("Loading sweep")
sweep = SweepFactory.sweep(filenames)
print("Loaded sweep of {0} images.".format(len(sweep)))
from dials.algorithms.peak_finding.spot_finder import SpotFinder
print("FAIL: dials_regression not configured")
raise
# The XDS values
xds_sigma_d = 0.060
xds_sigma_m = 0.154
# Read the reflections file
filename = os.path.join(dials_regression, "centroid_test_data",
"reflections.h5")
# filename = os.path.join('/home/upc86896/Data/X1_strong_M1S1_1_', 'reflections.h5')
handle = NexusFile(filename, "r")
# Get the reflection list
print("Reading reflections.")
reflections = handle.get_reflections()
print("Read {0} reflections.".format(len(reflections)))
# Read images
template = os.path.join(dials_regression, "centroid_test_data",
"centroid_*.cbf")
# template = os.path.join('/home/upc86896/Data/X1_strong_M1S1_1_', 'X1_strong_M1S1_1_*.cbf')
filenames = glob(template)
# Load the sweep
print("Loading sweep")
sweep = SweepFactory.sweep(filenames)
print("Loaded sweep of {0} images.".format(len(sweep)))
# Select the strong pixels to use in the divergence calculation
print("Select the strong pixels from the images.")
print 'FAIL: dials_regression not configured'
raise
# The XDS values
xds_sigma_d = 0.060
xds_sigma_m = 0.154
# Read the reflections file
filename = os.path.join(dials_regression,
'centroid_test_data', 'reflections.h5')
#filename = os.path.join('/home/upc86896/Data/X1_strong_M1S1_1_', 'reflections.h5')
handle = NexusFile(filename, 'r')
# Get the reflection list
print 'Reading reflections.'
predicted = handle.get_reflections()
print 'Read {0} reflections.'.format(len(predicted))
# Read images
template = os.path.join(dials_regression,
'centroid_test_data', 'centroid_*.cbf')
#template = os.path.join('/home/upc86896/Data/X1_strong_M1S1_1_', 'X1_strong_M1S1_1_*.cbf')
filenames = glob(template)
# Load the sweep
print 'Loading sweep'
sweep = SweepFactory.sweep(filenames)
print 'Loaded sweep of {0} images.'.format(len(sweep))
from dials.algorithms.peak_finding.spot_finder import SpotFinder
sweep.reader().set_max_cache(1)
