print("T2 dir found.")
pathROI = analasisysdir + "ROI/"
if os.path.isdir(pathROI):
print("ROI dir found.")
infos = info_file_parser(analasisysdir + "info2.txt")
timeflag = timeflagconverter_string2int(infos["time"])
ypT = int(infos["ypT"])
ypT2 = int(infos["ypT2"])
# # data, ROI = read_files(pathT2, pathROI, args.verbose, True)
freader = FileReader(pathT2, pathROI, args.verbose)
try:
data, ROI = freader.read(raw=True)
except NotImplementedError:
data = freader.readUsingGDCM(raw=True)
ROI = freader.readROI()
except ValueError:
print("Data not read. Check folders")
continue
roinorm=False
if args.verbose:
print("dicom file read")
if args.norm:
myroifilename = analasisysdir + "roinormmuscle.myroi"
roireader = roiFileHandler(args.verbose)
myroisnorm, roisnormSetted = roireader.read(myroifilename)
if os.path.isdir(pathT2):
print("T2 dir found.")
pathROI = analasisysdir + "ROI/"
if os.path.isdir(pathROI):
print("ROI dir found.")
infos = info_file_parser(analasisysdir + "info.txt")
timeflag[0] = timeflagconverter_string2int(infos["time"])
ypT[0] = int(infos["ypT"])
# # data, ROI = read_files(pathT2, pathROI, args.verbose, True)
freader = FileReader(pathT2, pathROI, args.verbose)
try:
data, ROI = freader.read(raw=True)
except NotImplementedError:
data = freader.readUsingGDCM(raw=True)
ROI = freader.readROI()
except ValueError:
continue
roinorm=False
if args.verbose:
print("dicom file read")
if args.norm:
myroifilename = analasisysdir + "roinormmuscle.myroi"
roireader = roiFileHandler(args.verbose)
myroisnorm, roisnormSetted = roireader.read(myroifilename)
pathROI = analasisysdir + "ROI/"
if os.path.isdir(pathROI):
print("ROI dir found.")
infos = info_file_parser(analasisysdir + "info2.txt")
timeflag[0] = timeflagconverter_string2int(infos["time"])
ypT[0] = int(infos["ypT"])
ypT2[0] = int(infos["ypT2"])
# # data, ROI = read_files(pathT2, pathROI, args.verbose, True)
freader = FileReader(pathT2, pathROI, args.verbose)
try:
data, ROI = freader.read(raw=True)
except NotImplementedError:
# data = freader.readUsingGDCM(raw=True)
dataTMP = freader.readUsingGDCM(raw=False)
data = dataTMP[:,:,:,0]
ROI = freader.readROI()
except ValueError:
continue
roinorm=False
if args.verbose:
print("dicom file read")
if args.norm:
myroifilename = analasisysdir + "roinormmuscle.myroi"
roireader = roiFileHandler(args.verbose)
myroisnorm, roisnormSetted = roireader.read(myroifilename)
