def setup_method(self):
self._geometry = SixCircleGammaOnArmGeometry()
self.reflist = ReflectionList(self._geometry,
['a', 'd', 'g', 'o', 'c', 'p'])
self.time = datetime.now()
pos = Pos(0.1, 0.2, 0.3, 0.4, 0.5, 0.6)
self.reflist.add_reflection(1, 2, 3, pos, 1000, "ref1", self.time)
pos = Pos(0.11, 0.22, 0.33, 0.44, 0.55, 0.66)
self.reflist.add_reflection(1.1, 2.2, 3.3, pos, 1100, "ref2",
self.time)
def decode_reflist(reflist_dict, geometry, diffractometer_axes_names, multiplier):
reflections = []
try:
sorted_ref_keys = sorted(reflist_dict.keys(), key=int)
except ValueError:
logger.warning("Warning: Invalid index found in the stored list of reflections. "
"Please check the reflection list order.")
sorted_ref_keys = sorted(reflist_dict.keys())
for key in sorted_ref_keys:
reflections.append(decode_reflection(reflist_dict[key], geometry))
return ReflectionList(geometry, diffractometer_axes_names, reflections, multiplier)
def _clear(self, name=None):
# NOTE the Diffraction calculator is expecting this object to exist in
# the long run. We can't remove this entire object, and recreate it.
# It also contains a required link to the angle calculator.
reflist = ReflectionList(self._geometry,
self._get_diffractometer_axes_names())
reference = YouReference(self._get_UB)
self._state = UBCalcState(name=name,
reflist=reflist,
reference=reference)
self._U = None
self._UB = None
self._state.configure_calc_type()
def _clear(self, name=None):
# NOTE the Diffraction calculator is expecting this object to exist in
# the long run. We can't remove this entire object, and recreate it.
# It also contains a required link to the angle calculator.
reflist = ReflectionList(
settings.geometry,
self._get_diffractometer_axes_names(),
multiplier=settings.hardware.energyScannableMultiplierToGetKeV)
orientlist = OrientationList(settings.geometry,
self._get_diffractometer_axes_names())
reference = YouReference(self._get_UB)
reference._set_n_hkl_configured(settings.reference_vector)
surface = YouReference(self._get_UB)
surface._set_n_phi_configured(settings.surface_vector)
self._state = UBCalcState(name=name,
reflist=reflist,
orientlist=orientlist,
reference=reference,
surface=surface)
self._U = None
self._UB = None
self._state.configure_calc_type()
def decode_reflist(reflist_dict, geometry, diffractometer_axes_names):
reflections = []
for key in sorted(reflist_dict.keys()):
reflections.append(decode_reflection(reflist_dict[key], geometry))
return ReflectionList(geometry, diffractometer_axes_names, reflections)
