def test_array_subclass():
try:
import numpy as np
class TestArray(np.ndarray):
def __new__(cls, input_array, color):
obj = np.asarray(input_array).view(cls)
obj.color = color
return obj
def __array_finalize__(self, obj):
if obj is None:
return
if isinstance(obj, type(self)):
self.color = obj.color
def __getnewargs__(self):
return np.asarray(self), self.color
a1 = TestArray(np.zeros(100), color='green')
assert dill.pickles(a1)
assert a1.__dict__ == dill.copy(a1).__dict__
a2 = a1[0:9]
assert dill.pickles(a2)
assert a2.__dict__ == dill.copy(a2).__dict__
class TestArray2(np.ndarray):
color = 'blue'
a3 = TestArray2([1,2,3,4,5])
a3.color = 'green'
assert dill.pickles(a3)
assert a3.__dict__ == dill.copy(a3).__dict__
except ImportError: pass
def __deepcopy__(self, memo):
import copy
import dill
cls = self.__class__
result = cls.__new__(cls)
memo[id(self)] = result
for k, v in self.__dict__.items():
if v is self._cost:
setattr(result, k, tuple(dill.copy(i) for i in v))
else:
try: #XXX: work-around instancemethods in python2.6
setattr(result, k, copy.deepcopy(v, memo))
except TypeError:
setattr(result, k, dill.copy(v))
return result
def errors(obj, depth=0, exact=False, safe=False):
"""get errors for objects that fail to pickle"""
from dill import pickles, copy
if not depth:
try:
pik = copy(obj)
if exact:
assert pik == obj, \
"Unpickling produces %s instead of %s" % (pik,obj)
assert type(pik) == type(obj), \
"Unpickling produces %s instead of %s" % (type(pik),type(obj))
return None
except Exception:
import sys
return sys.exc_info()[1]
_dict = {}
for attr in dir(obj):
try:
_attr = getattr(obj,attr)
except Exception:
import sys
_dict[attr] = sys.exc_info()[1]
continue
if not pickles(_attr,exact,safe):
_dict[attr] = errors(_attr,depth-1,exact,safe)
return _dict
def test_data_unchanged():
FooS = dill.copy(Foo)
try:
res = FooS().data
except Exception:
e = sys.exc_info()[1]
raise AssertionError(str(e))
else:
assert res == 1
def test_super():
assert dill.copy(obj1(), byref=True)
assert dill.copy(obj1(), byref=True, recurse=True)
#assert dill.copy(obj1(), recurse=True) #FIXME: fails __main__.py
assert dill.copy(obj1())
assert dill.copy(obj2(), byref=True)
assert dill.copy(obj2(), byref=True, recurse=True)
#assert dill.copy(obj2(), recurse=True) #FIXME: fails __main__.py
assert dill.copy(obj2())
assert dill.copy(obj3(), byref=True)
assert dill.copy(obj3(), byref=True, recurse=True)
#assert dill.copy(obj3(), recurse=True) #FIXME: fails __main__.py
assert dill.copy(obj3())
def test_mixins():
# test mixins
assert double_add(1, 2, 3) == 2 * fx
double_add.invert()
assert double_add(1, 2, 3) == -2 * fx
_d = dill.copy(double_add)
assert _d(1, 2, 3) == -2 * fx
_d.invert()
assert _d(1, 2, 3) == 2 * fx
assert _d.__wrapped__(1, 2, 3) == fx
# XXX: issue or feature? in python3.4, inverted is linked through copy
if not double_add.inverted[0]:
double_add.invert()
# test some stuff from source and pointers
ds = dill.source
dd = dill.detect
assert ds.getsource(dd.freevars(quadish)["f"]) == "@quad_factory(a=0,b=4,c=0)\ndef quadish(x):\n return x+1\n"
assert ds.getsource(dd.freevars(quadruple)["f"]) == "@doubler\ndef quadruple(x):\n return 2*x\n"
assert ds.importable(quadish, source=False) == "from %s import quadish\n" % __name__
assert ds.importable(quadruple, source=False) == "from %s import quadruple\n" % __name__
assert ds.importable(quadratic, source=False) == "from %s import quadratic\n" % __name__
assert ds.importable(double_add, source=False) == "from %s import double_add\n" % __name__
assert (
ds.importable(quadruple, source=True)
== "def doubler(f):\n def inner(*args, **kwds):\n fx = f(*args, **kwds)\n return 2*fx\n return inner\n\n@doubler\ndef quadruple(x):\n return 2*x\n"
)
# ***** #FIXME: this needs work
result = ds.importable(quadish, source=True)
a, b, c, _, result = result.split("\n", 4)
assert (
result
== "def quad_factory(a=1,b=1,c=0):\n def dec(f):\n def func(*args,**kwds):\n fx = f(*args,**kwds)\n return a*fx**2 + b*fx + c\n return func\n return dec\n\n@quad_factory(a=0,b=4,c=0)\ndef quadish(x):\n return x+1\n"
)
assert set([a, b, c]) == set(["a = 0", "c = 0", "b = 4"])
result = ds.importable(quadratic, source=True)
a, b, c, result = result.split("\n", 3)
assert (
result
== "\ndef dec(f):\n def func(*args,**kwds):\n fx = f(*args,**kwds)\n return a*fx**2 + b*fx + c\n return func\n"
)
assert set([a, b, c]) == set(["a = 1", "c = 0", "b = 1"])
result = ds.importable(double_add, source=True)
a, b, c, d, _, result = result.split("\n", 5)
assert (
result
== "def quad(a=1, b=1, c=0):\n inverted = [False]\n def invert():\n inverted[0] = not inverted[0]\n def dec(f):\n def func(*args, **kwds):\n x = f(*args, **kwds)\n if inverted[0]: x = -x\n return a*x**2 + b*x + c\n func.__wrapped__ = f\n func.invert = invert\n func.inverted = inverted\n return func\n return dec\n\n@quad(a=0,b=2)\ndef double_add(*args):\n return sum(args)\n"
)
assert set([a, b, c, d]) == set(["a = 0", "c = 0", "b = 2", "inverted = [True]"])
def errors(obj, depth=0, exact=False):
"""get errors for objects that fail to pickle"""
from dill import pickles, copy
if not depth:
try:
pik = copy(obj)
if exact:
assert pik == obj, \
"Unpickling produces %s instead of %s" % (pik,obj)
assert type(pik) == type(obj), \
"Unpickling produces %s instead of %s" % (type(pik),type(obj))
return None
except Exception, err:
return err
def errors(obj, depth=0, exact=False):
"""get errors for objects that fail to pickle"""
from dill import pickles, copy
if not depth:
try:
pik = copy(obj)
if exact:
assert pik == obj, \
"Unpickling produces %s instead of %s" % (pik,obj)
assert type(pik) == type(obj), \
"Unpickling produces %s instead of %s" % (type(pik),type(obj))
return None
except Exception:
import sys
return sys.exc_info()[1]
return dict(((attr, errors(getattr(obj,attr),depth-1,exact=exact)) \
for attr in dir(obj) if not pickles(getattr(obj,attr),exact)))
def __init__(self, num_procs, controller_params, description):
"""
Initialization routine for PFASST controller
Args:
num_procs: number of parallel time steps (still serial, though), can be 1
controller_params: parameter set for the controller and the step class
description: all the parameters to set up the rest (levels, problems, transfer, ...)
"""
# call parent's initialization routine
super(allinclusive_classic_nonMPI, self).__init__(controller_params)
self.logger.warning('classic controller is about to become deprecated, use multigrid controller instead')
self.MS = [stepclass.step(description)]
# try to initialize via dill.copy (much faster for many time-steps)
try:
for p in range(num_procs - 1):
self.MS.append(dill.copy(self.MS[0]))
# if this fails (e.g. due to un-picklable data in the steps), initialize seperately
except dill.PicklingError and TypeError:
self.logger.warning('Need to initialize steps separately due to pickling error')
for p in range(num_procs - 1):
self.MS.append(stepclass.step(description))
assert not (len(self.MS) > 1 and len(self.MS[0].levels) == 1), "ERROR: classic cannot do MSSDC"
if self.params.dump_setup:
self.dump_setup(step=self.MS[0], controller_params=controller_params, description=description)
num_levels = len(self.MS[0].levels)
if num_procs > 1 and num_levels > 1:
for S in self.MS:
for L in S.levels:
if not L.sweep.coll.right_is_node or L.sweep.params.do_coll_update:
raise ControllerError("For PFASST to work, we assume uend^k = u_M^k in this controller")
for nl in range(len(self.MS[0].levels)):
if self.MS[0].levels[nl].params.nsweeps > 1:
raise ControllerError('classic controller cannot do multiple sweeps')
def __init__(self, num_procs, controller_params, description):
"""
Initialization routine for PFASST controller
Args:
num_procs: number of parallel time steps (still serial, though), can be 1
controller_params: parameter set for the controller and the steps
description: all the parameters to set up the rest (levels, problems, transfer, ...)
"""
# call parent's initialization routine
super(allinclusive_multigrid_nonMPI, self).__init__(controller_params)
self.MS = [stepclass.step(description)]
for p in range(num_procs - 1):
self.MS.append(dill.copy(self.MS[0]))
if self.params.dump_setup:
self.dump_setup(step=self.MS[0], controller_params=controller_params, description=description)
if num_procs > 1 and len(self.MS[0].levels) > 1:
for S in self.MS:
for L in S.levels:
if not L.sweep.coll.right_is_node:
raise ControllerError("For PFASST to work, we assume uend^k = u_M^k")
if all(len(S.levels) == len(self.MS[0].levels) for S in self.MS):
self.nlevels = len(self.MS[0].levels)
else:
raise ControllerError('all steps need to have the same number of levels')
if self.nlevels == 0:
raise ControllerError('need at least one level')
self.nsweeps = []
for nl in range(self.nlevels):
if all(S.levels[nl].params.nsweeps == self.MS[0].levels[nl].params.nsweeps for S in self.MS):
self.nsweeps.append(self.MS[0].levels[nl].params.nsweeps)
if self.nlevels > 1 and self.nsweeps[-1] > 1:
raise ControllerError('this controller cannot do multiple sweeps on coarsest level')
def test_mixins():
# test mixins
assert double_add(1,2,3) == 2*fx
double_add.invert()
assert double_add(1,2,3) == -2*fx
_d = dill.copy(double_add)
assert _d(1,2,3) == -2*fx
#_d.invert() #FIXME: fails seemingly randomly
#assert _d(1,2,3) == 2*fx
assert _d.__wrapped__(1,2,3) == fx
# XXX: issue or feature? in python3.4, inverted is linked through copy
if not double_add.inverted[0]:
double_add.invert()
# test some stuff from source and pointers
ds = dill.source
dd = dill.detect
assert ds.getsource(dd.freevars(quadish)['f']) == '@quad_factory(a=0,b=4,c=0)\ndef quadish(x):\n return x+1\n'
assert ds.getsource(dd.freevars(quadruple)['f']) == '@doubler\ndef quadruple(x):\n return 2*x\n'
assert ds.importable(quadish, source=False) == 'from %s import quadish\n' % __name__
assert ds.importable(quadruple, source=False) == 'from %s import quadruple\n' % __name__
assert ds.importable(quadratic, source=False) == 'from %s import quadratic\n' % __name__
assert ds.importable(double_add, source=False) == 'from %s import double_add\n' % __name__
assert ds.importable(quadruple, source=True) == 'def doubler(f):\n def inner(*args, **kwds):\n fx = f(*args, **kwds)\n return 2*fx\n return inner\n\n@doubler\ndef quadruple(x):\n return 2*x\n'
#***** #FIXME: this needs work
result = ds.importable(quadish, source=True)
a,b,c,_,result = result.split('\n',4)
assert result == 'def quad_factory(a=1,b=1,c=0):\n def dec(f):\n def func(*args,**kwds):\n fx = f(*args,**kwds)\n return a*fx**2 + b*fx + c\n return func\n return dec\n\n@quad_factory(a=0,b=4,c=0)\ndef quadish(x):\n return x+1\n'
assert set([a,b,c]) == set(['a = 0', 'c = 0', 'b = 4'])
result = ds.importable(quadratic, source=True)
a,b,c,result = result.split('\n',3)
assert result == '\ndef dec(f):\n def func(*args,**kwds):\n fx = f(*args,**kwds)\n return a*fx**2 + b*fx + c\n return func\n'
assert set([a,b,c]) == set(['a = 1', 'c = 0', 'b = 1'])
result = ds.importable(double_add, source=True)
a,b,c,d,_,result = result.split('\n',5)
assert result == 'def quad(a=1, b=1, c=0):\n inverted = [False]\n def invert():\n inverted[0] = not inverted[0]\n def dec(f):\n def func(*args, **kwds):\n x = f(*args, **kwds)\n if inverted[0]: x = -x\n return a*x**2 + b*x + c\n func.__wrapped__ = f\n func.invert = invert\n func.inverted = inverted\n return func\n return dec\n\n@quad(a=0,b=2)\ndef double_add(*args):\n return sum(args)\n'
assert set([a,b,c,d]) == set(['a = 0', 'c = 0', 'b = 2', 'inverted = [True]'])
def solve(self, steps):
self.problem.eval_count = 0
pool = pathos.pools.ProcessPool()
n_cpus = pool.ncpus
mapping_steps = int(steps**(1 / 5))
self.steps_per_pool = steps // (n_cpus * mapping_steps)
print(self.steps_per_pool)
print(mapping_steps)
print(n_cpus)
to_solve = dill.copy(self)
for i in range(mapping_steps):
solutions = pool.map(self._solve_pool, [to_solve] * n_cpus)
self.best_solution = max(
(s for s in solutions + [self.best_solution]),
key=lambda x: x.score)
self.problem.eval_count += self.steps_per_pool * n_cpus
self.record()
print(i * n_cpus * self.steps_per_pool)
return 2*fx
return inner
@doubler
def quadruple(x):
return 2*x
if __name__ == '__main__':
# test mixins
assert double_add(1,2,3) == 2*fx
double_add.invert()
assert double_add(1,2,3) == -2*fx
_d = dill.copy(double_add)
assert _d(1,2,3) == -2*fx
_d.invert()
assert _d(1,2,3) == 2*fx
assert _d.__wrapped__(1,2,3) == fx
# XXX: issue or feature? in python3.4, inverted is linked through copy
if not double_add.inverted[0]:
double_add.invert()
# test some stuff from source and pointers
ds = dill.source
dd = dill.detect
assert ds.getsource(dd.freevars(quadish)['f']) == '@quad_factory(a=0,b=4,c=0)\ndef quadish(x):\n return x+1\n'
assert ds.getsource(dd.freevars(quadruple)['f']) == '@doubler\ndef quadruple(x):\n return 2*x\n'
def test_data_not_none():
FooS = dill.copy(Foo)
assert FooS.data.fget is not None
assert FooS.data.fset is not None
assert FooS.data.fdel is None
def test_super():
assert dill.copy(obj1(), byref=True)
assert dill.copy(obj1(), byref=True, recurse=True)
assert dill.copy(obj1(), recurse=True)
assert dill.copy(obj1())
assert dill.copy(obj2(), byref=True)
assert dill.copy(obj2(), byref=True, recurse=True)
assert dill.copy(obj2(), recurse=True)
assert dill.copy(obj2())
assert dill.copy(obj3(), byref=True)
assert dill.copy(obj3(), byref=True, recurse=True)
assert dill.copy(obj3(), recurse=True)
assert dill.copy(obj3())
del sys.modules[module.__name__]
del module
module = dill.loads(pik_mod)
assert hasattr(module, "a") and module.a == 1234
assert module.double_add(1, 2, 3) == 2 * module.fx
except AttributeError:
pass
# clean up
import os
os.remove(cached)
pycache = os.path.join(os.path.dirname(module.__file__), "__pycache__")
if os.path.exists(pycache) and not os.listdir(pycache):
os.removedirs(pycache)
# test when module is None
import math
def get_lambda(str, **kwarg):
return eval(str, kwarg, None)
obj = get_lambda('lambda x: math.exp(x)', math=math)
assert obj.__module__ is None
assert dill.copy(obj)(3) == obj(3)
# EOF
def dec(f):
def func(*args, **kwds):
x = f(*args, **kwds)
if inverted[0]: x = -x
return a*x**2 + b*x + c
func.__wrapped__ = f
func.invert = invert
return func
return dec
@quad(a=0,b=2)
def double_add(*args):
return sum(args)
fx = sum([1,2,3])
assert double_add(1,2,3) == 2*fx
double_add.invert()
assert double_add(1,2,3) == -2*fx
_d = dill.copy(double_add)
assert _d(1,2,3) == -2*fx
_d.invert()
assert _d(1,2,3) == 2*fx
assert _d.__wrapped__(1,2,3) == fx
# EOF
class TestArray(np.ndarray):
def __new__(cls, input_array, color):
obj = np.asarray(input_array).view(cls)
obj.color = color
return obj
def __array_finalize__(self, obj):
if obj is None:
return
if isinstance(obj, type(self)):
self.color = obj.color
def __getnewargs__(self):
return np.asarray(self), self.color
a1 = TestArray(np.zeros(100), color='green')
assert dill.pickles(a1)
assert a1.__dict__ == dill.copy(a1).__dict__
a2 = a1[0:9]
assert dill.pickles(a2)
assert a2.__dict__ == dill.copy(a2).__dict__
class TestArray2(np.ndarray):
color = 'blue'
a3 = TestArray2([1,2,3,4,5])
a3.color = 'green'
assert dill.pickles(a3)
assert a3.__dict__ == dill.copy(a3).__dict__
except ImportError: pass
def test_partial():
assert dill.copy(Machine(), byref=True)
assert dill.copy(Machine(), byref=True, recurse=True)
if not OLDER:
assert dill.copy(Machine(), recurse=True)
assert dill.copy(Machine())
def test_partials():
assert dill.copy(SubMachine(), byref=True)
assert dill.copy(SubMachine(), byref=True, recurse=True)
#if not OLDER: #FIXME: fails __main__.py
# assert dill.copy(SubMachine(), recurse=True)
assert dill.copy(SubMachine())
def test_data_not_none():
FooS = dill.copy(Foo)
assert FooS.data.fget is not None
assert FooS.data.fset is not None
assert FooS.data.fdel is None
#Lets print the best fit params
print("Loglik = %s" % fit.loglik)
fit.print_info() #this is an obsolete function call, will be replaced!
# To get the phased signals:
for i in range(fit.npl):
rv.phase_RV_planet_signal(fit, i + 1)
################# Dynamical fitting #############################
# now lets fit dynamics model starting from the best Keplerian derived above
#first lets copy the Keplerian object, we will need it later for plotting
import dill
kep_fit = dill.copy(fit)
################# Plotting #############################
# lets make some basic plots with the "fit" object results:
import matplotlib.pyplot as plt
from matplotlib import gridspec
import matplotlib as mpl
import numpy as np
###### For nice plotting ##############
mpl.rcParams['axes.linewidth'] = 2.0 #set the value globally
mpl.rcParams['xtick.major.pad'] = '8'
def test_super():
assert dill.copy(obj1(), byref=True)
assert dill.copy(obj1(), byref=True, recurse=True)
assert dill.copy(obj1(), recurse=True)
assert dill.copy(obj1())
assert dill.copy(obj2(), byref=True)
assert dill.copy(obj2(), byref=True, recurse=True)
assert dill.copy(obj2(), recurse=True)
assert dill.copy(obj2())
assert dill.copy(obj3(), byref=True)
assert dill.copy(obj3(), byref=True, recurse=True)
assert dill.copy(obj3(), recurse=True)
assert dill.copy(obj3())
def test_slots():
assert dill.pickles(Y)
assert dill.pickles(y)
assert dill.pickles(Y.y)
assert dill.copy(y).y == value
class TestArray(np.ndarray):
def __new__(cls, input_array, color):
obj = np.asarray(input_array).view(cls)
obj.color = color
return obj
def __array_finalize__(self, obj):
if obj is None:
return
if isinstance(obj, type(self)):
self.color = obj.color
def __getnewargs__(self):
return np.asarray(self), self.color
a1 = TestArray(np.zeros(100), color='green')
assert dill.pickles(a1)
assert a1.__dict__ == dill.copy(a1).__dict__
a2 = a1[0:9]
assert dill.pickles(a2)
assert a2.__dict__ == dill.copy(a2).__dict__
class TestArray2(np.ndarray):
color = 'blue'
a3 = TestArray2([1,2,3,4,5])
a3.color = 'green'
assert dill.pickles(a3)
assert a3.__dict__ == dill.copy(a3).__dict__
except ImportError: pass
obj = np.asarray(input_array).view(cls)
obj.color = color
return obj
def __array_finalize__(self, obj):
if obj is None:
return
if isinstance(obj, type(self)):
self.color = obj.color
def __getnewargs__(self):
return np.asarray(self), self.color
a1 = TestArray(np.zeros(100), color='green')
assert dill.pickles(a1)
assert a1.__dict__ == dill.copy(a1).__dict__
a2 = a1[0:9]
assert dill.pickles(a2)
assert a2.__dict__ == dill.copy(a2).__dict__
class TestArray2(np.ndarray):
color = 'blue'
a3 = TestArray2([1, 2, 3, 4, 5])
a3.color = 'green'
assert dill.pickles(a3)
assert a3.__dict__ == dill.copy(a3).__dict__
except ImportError:
pass
def __init__(self, num_procs, controller_params, description):
"""
Initialization routine for PFASST controller
Args:
num_procs: number of parallel time steps (still serial, though), can be 1
controller_params: parameter set for the controller and the steps
description: all the parameters to set up the rest (levels, problems, transfer, ...)
"""
if 'predict' in controller_params:
raise ControllerError(
'predict flag is ignored, use predict_type instead')
# call parent's initialization routine
super(controller_nonMPI, self).__init__(controller_params)
self.MS = [stepclass.step(description)]
# try to initialize via dill.copy (much faster for many time-steps)
try:
for p in range(num_procs - 1):
self.MS.append(dill.copy(self.MS[0]))
# if this fails (e.g. due to un-picklable data in the steps), initialize seperately
except dill.PicklingError and TypeError:
self.logger.warning(
'Need to initialize steps separately due to pickling error')
for p in range(num_procs - 1):
self.MS.append(stepclass.step(description))
if self.params.dump_setup:
self.dump_setup(step=self.MS[0],
controller_params=controller_params,
description=description)
if num_procs > 1 and len(self.MS[0].levels) > 1:
for S in self.MS:
for L in S.levels:
if not L.sweep.coll.right_is_node:
raise ControllerError(
"For PFASST to work, we assume uend^k = u_M^k")
if all(len(S.levels) == len(self.MS[0].levels) for S in self.MS):
self.nlevels = len(self.MS[0].levels)
else:
raise ControllerError(
'all steps need to have the same number of levels')
if self.nlevels == 0:
raise ControllerError('need at least one level')
self.nsweeps = []
for nl in range(self.nlevels):
if all(S.levels[nl].params.nsweeps ==
self.MS[0].levels[nl].params.nsweeps for S in self.MS):
self.nsweeps.append(self.MS[0].levels[nl].params.nsweeps)
if self.nlevels > 1 and self.nsweeps[-1] > 1:
raise ControllerError(
'this controller cannot do multiple sweeps on coarsest level')
if self.nlevels == 1 and self.params.predict_type is not None:
self.logger.warning(
'you have specified a predictor type but only a single level.. '
'predictor will be ignored')
def test_partial():
assert dill.copy(Machine(), byref=True)
assert dill.copy(Machine(), byref=True, recurse=True)
if not OLDER:
assert dill.copy(Machine(), recurse=True)
assert dill.copy(Machine())
del sys.modules[module.__name__]
del module
module = dill.loads(pik_mod)
assert hasattr(module, "a") and module.a == 1234
assert module.double_add(1, 2, 3) == 2 * module.fx
except AttributeError:
pass
# clean up
import os
os.remove(cached)
pycache = os.path.join(os.path.dirname(module.__file__), "__pycache__")
if os.path.exists(pycache) and not os.listdir(pycache):
os.removedirs(pycache)
# test when module is None
import math
def get_lambda(str, **kwarg):
return eval(str, kwarg, None)
obj = get_lambda('lambda x: math.exp(x)', math=math)
assert obj.__module__ is None
assert dill.copy(obj)(3) == obj(3)
# EOF
def test_partials():
assert dill.copy(SubMachine(), byref=True)
assert dill.copy(SubMachine(), byref=True, recurse=True)
#if not OLDER: #FIXME: fails __main__.py
# assert dill.copy(SubMachine(), recurse=True)
assert dill.copy(SubMachine())
def test_slots():
assert dill.pickles(Y)
assert dill.pickles(y)
assert dill.pickles(Y.y)
assert dill.copy(y).y == value
#lets print the best fit params
print("Loglik = %s"%fit.loglik)
fit.print_info() #this is an obsolete function call, will be replaced!
################# Dynamical fitting #############################
# now lets fit dynamics model starting from the best Keplerian derived above
#first lets copy the Keplerian object, we will need it later for plotting
import dill
kep_fit = dill.copy(fit)
fit.mod_dynamical=True
fit.fitting(outputfiles=[1,1,1], doGP=False, minimize_fortran=True, minimize_loglik=True, amoeba_starts=20, print_stat=False, eps=1000, dt=10, npoints=6000, model_max=0, model_min=0)
#lets print the best fit params
print("Loglik = %s"%fit.loglik)
fit.print_info() #this is an obsolete function call, will be replaced!
#lets copy the fit object as dyn_fit, we will need it later for plotting
dyn_fit = dill.copy(fit)
def test_module_is_none():
assert obj.__module__ is None
assert dill.copy(obj)(3) == obj(3)
class Foo(object):
def __init__(self):
self._data = 1
def _get_data(self):
return self._data
def _set_data(self, x):
self._data = x
data = property(_get_data, _set_data)
FooS = dill.copy(Foo)
assert FooS.data.fget is not None
assert FooS.data.fset is not None
assert FooS.data.fdel is None
try:
res = FooS().data
except Exception:
e = sys.exc_info()[1]
raise AssertionError(str(e))
else:
assert res == 1
try:
f = FooS()