def is_boolean_array(value):
"""
>>> from dimarray import DimArray
>>> a = DimArray([1,2,3])
>>> is_boolean_array(a)
False
>>> is_boolean_array(a>1)
True
"""
return (isinstance(value, np.ndarray) or is_DimArray(value)) \
and value.dtype is np.dtype('bool')
def __getitem__(self, ix):
"""
"""
#
# check special cases
#
assert ix is not None, "index is None!"
if self.position_index:
return ix
# boolean indexing ?
if is_DimArray(ix):
ix = ix.values
if type(ix) in (np.ndarray,) and ix.dtype is np.dtype(bool):
return ix
# make sure (1,) is understood as 1 just as numpy would
elif type(ix) is tuple:
if len(ix) == 1:
ix = ix[0]
# else:
# raise TypeError("index not understood: did you mean a `slice`?")
#
# look up corresponding numpy indices
#
# e.g. 45:56
if type(ix) is slice:
res = self.slice(ix)
elif self._islist(ix):
res = map(self.locate, ix)
#res = [self.locate(i) for i in ix]
else:
res = self.locate(ix)
return res
def operation(func, o1, o2, reindex=True, broadcast=True, constructor=None):
""" binary operation involving a DimArray objects
Parameters
----------
func : operator
o1 : LHS operand: DimArray
o2 : RHS operand: at least: be convertible by np.array())
align : bool, optional
if True, use pandas to align the axes
constructor : class Constructor, optional
if None, o1's class constructor (o1._constructor) is used instead
Returns
-------
DimArray instance
"""
if constructor is None:
constructor = o1._constructor
# second operand is not a DimArray: let numpy do the job
if not is_DimArray(o2): # isinstance
if np.ndim(o2) > np.ndim(o1):
raise ValueError("bad input: second operand's dimensions not documented")
res = func(o1.values, np.array(o2))
return constructor(res, o1.axes)
# check for first operand (reverse operations)
elif not is_DimArray(o1): # isinstance
if np.ndim(o1) > np.ndim(o2):
raise ValueError("bad input: second operand's dimensions not documented")
res = func(np.array(o1), o2.values)
return constructor(res, o2.axes)
# both objects are dimarrays
# check grid mapping and emit a warning if mismatch
if hasattr(o1, 'grid_mapping') and hasattr(o2, 'grid_mapping') \
and o1.grid_mapping != o2.grid_mapping:
warnings.warn("binary op : grid mappings mismatch")
# Align axes by re-indexing
if reindex:
o1, o2 = align_axes(o1, o2)
# Align dimensions by adding new axes and transposing if necessary
if broadcast:
o1, o2 = align_dims(o1, o2)
# make the new axes
newaxes = o1.axes.copy()
# ...make sure no singleton value is included
for i, ax in enumerate(newaxes):
if ax.values[0] is None:
newaxes[i] = o2.axes[ax.name]
res = func(o1.values, o2.values)
return constructor(res, newaxes)
def stack(arrays, axis=None, keys=None, align=False, **kwargs):
""" stack arrays along a new dimension (raise error if already existing)
Parameters
----------
arrays : sequence or dict of arrays
axis : str, optional
new dimension along which to stack the array
keys : array-like, optional
stack axis values, useful if array is a sequence, or a non-ordered dictionary
align : bool, optional
if True, align axes prior to stacking (Default to False)
**kwargs : optional key-word arguments passed to align, if align is True
Returns
-------
DimArray : joint array
See Also
--------
concatenate : join arrays along an existing dimension
swapaxes : to modify the position of the newly inserted axis
Examples
--------
>>> from dimarray import DimArray
>>> a = DimArray([1,2,3])
>>> b = DimArray([11,22,33])
>>> stack([a, b], axis='stackdim', keys=['a','b'])
dimarray: 6 non-null elements (0 null)
0 / stackdim (2): 'a' to 'b'
1 / x0 (3): 0 to 2
array([[ 1, 2, 3],
[11, 22, 33]])
"""
assert not isinstance(axis, int), "axis must be a str (you are creating a new axis)"
# make a sequence of arrays
arrays, keys = _check_stack_args(arrays, keys)
for a in arrays:
if not is_DimArray(a): raise TypeError('can only stack DimArray instances')
# make sure the stacking dimension is OK (new)
dims = get_dims(*arrays)
axis = _check_stack_axis(axis, dims)
# re-index axes if needed
if align:
kwargs['strict'] = True
arrays = align_(arrays, **kwargs)
# make it a numpy array
data = [a.values for a in arrays]
data = np.array(data)
# new axis
newaxis = Axis(keys, axis)
# find common axes
try:
axes = _get_axes(*arrays)
except ValueError, msg:
if 'axes are not aligned' in repr(msg):
msg = 'axes are not aligned\n ==> Try passing `align=True`'
raise ValueError(msg)