class TestMyChemParser(unittest.TestCase):
def setUp(self):
self.test_util = TestUtils()
self.source = MyChem('rdf_graph', True)
# Replaces source.fetch()
data_fh = open(TESTDATA, 'r')
self.test_data = json.load(data_fh)
data_fh.close()
self.source.drugbank_targets.append(self.test_data[0])
self.source.drugcentral_interactors.append(self.test_data[0])
def tearDown(self):
self.source = None
def test_parse(self):
self.source.graph = RDFGraph(True) # Reset graph
self.assertTrue(len(list(self.source.graph)) == 0)
self.source.parse()
triples = """
UNII:46U771ERWK RO:0002606 SNOMED:386761002 ;
rdfs:subClassOf CHEBI:23367 .
SNOMED:386761002 rdfs:label "Local anesthesia" ;
rdfs:subClassOf DOID:4 .
"""
# dbg
logger.debug(
"Reference graph: %s",
self.source.graph.serialize(format="turtle").decode("utf-8"))
self.assertTrue(
self.test_util.test_graph_equality(triples, self.source.graph))
def setUp(self):
self.test_util = TestUtils()
self.source = MyChem('rdf_graph', True)
# Replaces source.fetch()
data_fh = open(TESTDATA, 'r')
self.test_data = json.load(data_fh)
data_fh.close()
self.source.drugbank_targets.append(self.test_data[0])
self.source.drugcentral_interactors.append(self.test_data[0])
def setUp(self):
self.test_util = TestUtils()
self.source = MyChem('rdf_graph', True)
# Replaces source.fetch()
data_fh = open(TESTDATA, 'r')
self.test_data = json.load(data_fh)
data_fh.close()
self.source.drugbank_targets.append(self.test_data[0])
self.source.drugcentral_interactors.append(self.test_data[0])
class TestMyChemParser(unittest.TestCase):
def setUp(self):
self.test_util = TestUtils()
self.source = MyChem('rdf_graph', True)
# Replaces source.fetch()
data_fh = open(TESTDATA, 'r')
self.test_data = json.load(data_fh)
data_fh.close()
self.source.drugbank_targets.append(self.test_data[0])
self.source.drugcentral_interactors.append(self.test_data[0])
def tearDown(self):
self.source = None
def test_parse(self):
self.source.graph = RDFGraph(True) # Reset graph
self.assertTrue(len(list(self.source.graph)) == 0)
self.source.parse()
triples = """
UNII:46U771ERWK RO:0002606 SNOMED:386761002 ;
rdfs:subClassOf CHEBI:23367 .
SNOMED:386761002 rdfs:label "Local anesthesia" ;
rdfs:subClassOf DOID:4 .
"""
# dbg
logger.debug("Reference graph: %s",
self.source.graph.serialize(format="turtle")
.decode("utf-8")
)
self.assertTrue(self.test_util.test_graph_equality(
triples, self.source.graph))