def setUp(self):
self.package_path = os.path.join(SAMPLES_PATH,
"0034-8910-rsp-47-02-0231")
self.xml_path = os.path.join(self.package_path,
"0034-8910-rsp-47-02-0231.xml")
self.xml_etree = loadToXML(self.xml_path)
self.package_files = [
"0034-8910-rsp-47-02-0231-en.pdf",
"0034-8910-rsp-47-02-0231-gf01-en.jpg",
"0034-8910-rsp-47-02-0231-gf01-en.tif",
"0034-8910-rsp-47-02-0231-gf01.jpg",
"0034-8910-rsp-47-02-0231-gf01.tif",
"0034-8910-rsp-47-02-0231.pdf",
"0034-8910-rsp-47-02-0231.xml",
]
self.second_package_path = os.path.join(SAMPLES_PATH,
"0034-8910-rsp-47-02-0403")
self.second_xml_path = os.path.join(self.second_package_path,
"0034-8910-rsp-47-02-0403.xml")
self.second_xml_etree = loadToXML(self.second_xml_path)
self.second_package_files = [
"0034-8910-rsp-47-02-0403-gf01.jpg",
"0034-8910-rsp-47-02-0403-gf01.tif",
"0034-8910-rsp-47-02-0403.pdf",
"0034-8910-rsp-47-02-0403.xml",
]
self.session = Session()
def convert_article_xml(file_xml_path):
obj_xmltree = xml.loadToXML(file_xml_path)
obj_xml = obj_xmltree.getroot()
obj_xml.set("specific-use", "sps-1.9")
obj_xml.set("dtd-version", "1.1")
xml_sps = SPS_Package(obj_xmltree)
# CONVERTE O BODY DO AM PARA SPS
xml_sps.transform_body()
# CONVERTE PUB-DATE PARA SPS 1.9
xml_sps.transform_pubdate()
# CONSTROI O SCIELO-id NO XML CONVERTIDO
xml_sps.create_scielo_id()
# Remove a TAG <counts> do XML
xml_sps.transform_article_meta_count()
languages = "-".join(xml_sps.languages)
_, fname = os.path.split(file_xml_path)
fname, fext = fname.rsplit(".", 1)
new_file_xml_path = os.path.join(config.get("CONVERSION_PATH"),
"%s.%s.%s" % (fname, languages, fext))
xml.objXML2file(new_file_xml_path, xml_sps.xmltree, pretty=True)
def article_xml_constructor(file_xml_path: str, dest_path: str,
pid_database_engine, in_place: bool) -> None:
logger.debug("file: %s", file_xml_path)
parsed_xml = xml.loadToXML(file_xml_path)
xml_sps = SPS_Package(parsed_xml)
pid_v2 = xml_sps.scielo_pid_v2
# VERIFICA A EXISTÊNCIA DO PID V3 NO XC ATRAVES DO PID V2
if not pid_manager.check_pid_v3_by_v2(pid_database_engine, pid_v2):
# CONSTROI O SCIELO-id NO XML CONVERTIDO
xml_sps.create_scielo_id()
# CRIA O PID V2 E V3 NA BASE DE DADOS DO XC
pid_manager.create_pid(pid_database_engine, pid_v2,
xml_sps.scielo_pid_v3)
else:
# SE CASO EXISTA O PID NO VERSÃO 3 NA BASE DO XC É PRECISO ADICIONAR NO XML
pid_v3 = pid_manager.get_pid_v3_by_v2(pid_database_engine, pid_v2)
xml_sps.scielo_pid_v3 = pid_v3
if in_place:
new_file_xml_path = file_xml_path
else:
new_file_xml_path = os.path.join(dest_path,
os.path.basename(file_xml_path))
xml.objXML2file(new_file_xml_path, xml_sps.xmltree, pretty=True)
def register_document(folder: str, session_db, storage) -> None:
logger.info("Processando a Pasta %s", folder)
list_files = files.list_files(folder)
obj_xml = None
prefix = ""
xml_files = files.xml_files_list(folder)
_renditions = list(
filter(lambda file: ".pdf" in file or ".html" in file, list_files))
if len(xml_files) > 1:
raise exceptions.XMLError("Existe %s xmls no pacote SPS",
len(xml_files))
else:
try:
x_file = xml_files[0]
except IndexError as ex:
raise exceptions.XMLError("Não existe XML no pacote SPS: %s", ex)
xml_path = os.path.join(folder, x_file)
obj_xml = xml.loadToXML(xml_path)
xml_sps = SPS_Package(obj_xml)
# TODO: é possível que alguns artigos não possuam o self.acron
prefix = xml_sps.media_prefix
url_xml = storage.register(xml_path, prefix)
static_assets, static_additionals = get_document_assets_path(
obj_xml, list_files, folder)
registered_assets = put_static_assets_into_storage(static_assets, prefix,
storage)
for additional_path in static_additionals.values():
storage.register(os.path.join(additional_path), prefix)
if obj_xml:
renditions = get_document_renditions(folder, _renditions, prefix,
storage)
manifest_data = ManifestDomainAdapter(
manifest=manifest.get_document_manifest(
obj_xml, url_xml, registered_assets, renditions))
try:
session_db.documents.add(data=manifest_data)
session_db.changes.add({
"timestamp": utcnow(),
"entity": "Document",
"id": manifest_data.id()
})
logger.info("Document-store save: %s", manifest_data.id())
except AlreadyExists as exc:
logger.exception(exc)
return obj_xml, manifest_data.id()
def register_document(folder: str, session_db, storage) -> None:
logger.info("Processando a Pasta %s", folder)
list_files = files.list_files(folder)
obj_xml = None
prefix = ""
xml_files = files.xml_files_list(folder)
medias_files = set(list_files) - set(xml_files)
if len(xml_files) > 1:
raise exceptions.XMLError("Existe %s xmls no pacote SPS",
len(xml_files))
else:
try:
x_file = xml_files[0]
except IndexError as ex:
raise exceptions.XMLError("Não existe XML no pacote SPS: %s", ex)
xml_path = os.path.join(folder, x_file)
obj_xml = xml.loadToXML(xml_path)
xml_sps = SPS_Package(obj_xml)
prefix = xml_sps.media_prefix
url_xml = storage.register(xml_path, prefix)
assets = []
for m_file in medias_files:
assets.append({
"asset_id":
m_file,
"asset_url":
storage.register(os.path.join(folder, m_file), prefix),
})
if obj_xml:
manifest_data = ManifestDomainAdapter(
manifest=manifest.get_document_manifest(obj_xml, url_xml, assets))
try:
session_db.documents.add(data=manifest_data)
session_db.changes.add({
"timestamp": utcnow(),
"entity": "Document",
"id": manifest_data.id()
})
logger.info("Document-store save: %s", manifest_data.id())
except AlreadyExists as exc:
logger.exception(exc)
return obj_xml, manifest_data.id()
def article_xml_constructor(file_xml_path: str, dest_path: str) -> None:
logger.debug("file: %s", file_xml_path)
parsed_xml = xml.loadToXML(file_xml_path)
xml_sps = SPS_Package(parsed_xml)
# CONSTROI O SCIELO-id NO XML CONVERTIDO
xml_sps.create_scielo_id()
new_file_xml_path = os.path.join(dest_path,
os.path.basename(file_xml_path))
xml.objXML2file(new_file_xml_path, xml_sps.xmltree, pretty=True)
def update_xml_file(self, xml_target_path, row, pack_name):
"""
Lê e atualiza o XML do pacote informado com os dados de artigos do arquivo
articles_data_reader.
"""
obj_xmltree = xml.loadToXML(xml_target_path)
logger.debug('Updating XML "%s" with CSV info', xml_target_path)
sps_package = self._update_sps_package_obj(SPS_Package(obj_xmltree),
pack_name, row,
xml_target_path)
# Salva XML com alterações
xml.objXML2file(xml_target_path, sps_package.xmltree, pretty=True)
return sps_package
def article_xml_constructor(file_xml_path: str, dest_path: str,
pid_database_engine, in_place: bool) -> None:
logger.debug("file: %s", file_xml_path)
parsed_xml = xml.loadToXML(file_xml_path)
xml_sps = SPS_Package(parsed_xml)
register_pid_v3(pid_database_engine, xml_sps)
if in_place:
new_file_xml_path = file_xml_path
else:
new_file_xml_path = os.path.join(dest_path,
os.path.basename(file_xml_path))
xml.objXML2file(new_file_xml_path, xml_sps.xmltree, pretty=True)
def convert_article_xml(file_xml_path: str,
spy=False,
poison_pill=PoisonPill()):
if poison_pill.poisoned:
return
logger.info(os.path.basename(file_xml_path))
obj_xmltree = xml.loadToXML(file_xml_path)
obj_xml = obj_xmltree.getroot()
obj_xml.set("specific-use", "sps-1.9")
obj_xml.set("dtd-version", "1.1")
xml_sps = SPS_Package(obj_xmltree)
# CONVERTE O BODY DO AM PARA SPS
xml_sps.transform_body(spy)
# Transforma XML em SPS 1.9
xml_sps.transform_content()
# Completa datas presentes na base artigo e ausente no XML
json_file_path = Path(config.get("SOURCE_PATH")).joinpath(
Path(xml_sps.scielo_pid_v2 + ".json"))
article = xylose_converter.json_file_to_xylose_article(json_file_path)
document_pubdate, issue_pubdate = get_article_dates(article)
xml_sps.complete_pub_date(document_pubdate, issue_pubdate)
# Remove a TAG <counts> do XML
xml_sps.transform_article_meta_count()
languages = "-".join(xml_sps.languages)
_, fname = os.path.split(file_xml_path)
fname, fext = fname.rsplit(".", 1)
new_file_xml_path = os.path.join(config.get("CONVERSION_PATH"),
"%s.%s.%s" % (fname, languages, fext))
xml.objXML2file(new_file_xml_path, xml_sps.xmltree, pretty=True)
def register_document(folder: str, session, storage, pid_database_engine, poison_pill=PoisonPill()) -> None:
"""Registra registra pacotes SPS em uma instância do Kernel e seus
ativos digitais em um object storage."""
if poison_pill.poisoned:
return
logger.debug("Starting the import step for '%s' package.", folder)
package_files = files.list_files(folder)
xmls = files.xml_files_list(folder)
if xmls is None or len(xmls) == 0:
raise exceptions.XMLError(
"There is no XML file into package '%s'. Please verify and try later."
% folder
) from None
xml_path = os.path.join(folder, xmls[0])
constructor.article_xml_constructor(xml_path, folder, pid_database_engine, False)
try:
obj_xml = xml.loadToXML(xml_path)
except lxml.etree.ParseError as exc:
raise exceptions.XMLError(
"Could not parse the '%s' file, please validate"
" this file before then try to import again." % xml_path,
) from None
xml_sps = SPS_Package(obj_xml)
pid_v3 = xml_sps.scielo_pid_v3
try:
session.documents.fetch(id=pid_v3)
except DoesNotExist:
pass
else:
logger.debug(
"Document '%s' already exist in kernel. Returning article result information",
pid_v3,
)
return get_article_result_dict(xml_sps)
prefix = xml_sps.media_prefix or ""
url_xml = storage.register(xml_path, prefix)
static_assets, static_additionals = get_document_assets_path(
obj_xml, package_files, folder
)
registered_assets = put_static_assets_into_storage(static_assets, prefix, storage)
for additional_path in static_additionals.values():
storage.register(os.path.join(additional_path), prefix)
renditions = get_document_renditions(folder, prefix, storage)
document = Document(
manifest=manifest.get_document_manifest(
xml_sps, url_xml, registered_assets, renditions
)
)
try:
add_document(session, document)
if renditions:
add_renditions(session, document)
except AlreadyExists as exc:
logger.error(exc)
else:
logger.debug("Document with id '%s' was imported.", document.id())
return get_article_result_dict(xml_sps)
