def test_save_and_read_mesh_2D(tempdir):
filename = os.path.join(tempdir, "mesh2d.h5")
# Write to file
mesh0 = UnitSquareMesh(MPI.comm_world, 20, 20)
mesh_file = HDF5File(mesh0.mpi_comm(), filename, "w")
mesh_file.write(mesh0, "/my_mesh")
mesh_file.close()
# Read from file
mesh_file = HDF5File(mesh0.mpi_comm(), filename, "r")
mesh1 = mesh_file.read_mesh("/my_mesh", False, cpp.mesh.GhostMode.none)
mesh_file.close()
assert mesh0.num_entities_global(0) == mesh1.num_entities_global(0)
dim = mesh0.topology.dim
assert mesh0.num_entities_global(dim) == mesh1.num_entities_global(dim)
# Read from file, and use partition from file
mesh_file = HDF5File(mesh0.mpi_comm(), filename, "r")
mesh2 = mesh_file.read_mesh("/my_mesh", True, cpp.mesh.GhostMode.none)
mesh_file.close()
assert mesh0.num_cells() == mesh2.num_cells()
dim = mesh0.topology.dim
assert mesh0.num_entities_global(dim) == mesh1.num_entities_global(dim)
def test_save_and_load_2d_mesh(tempdir, encoding):
filename = os.path.join(tempdir, "mesh_2D.xdmf")
mesh = UnitSquareMesh(MPI.comm_world, 32, 32)
with XDMFFile(mesh.mpi_comm(), filename, encoding=encoding) as file:
file.write(mesh)
with XDMFFile(MPI.comm_world, filename) as file:
mesh2 = file.read_mesh(cpp.mesh.GhostMode.none)
assert mesh.num_entities_global(0) == mesh2.num_entities_global(0)
dim = mesh.topology.dim
assert mesh.num_entities_global(dim) == mesh2.num_entities_global(dim)
def test_save_and_load_2d_quad_mesh(tempdir, encoding):
if invalid_config(encoding):
pytest.skip("XDMF unsupported in current configuration")
filename = os.path.join(tempdir, "mesh_2D_quad.xdmf")
mesh = UnitSquareMesh(MPI.comm_world, 32, 32, CellType.Type.quadrilateral)
with XDMFFile(mesh.mpi_comm(), filename, encoding=encoding) as file:
file.write(mesh)
with XDMFFile(MPI.comm_world, filename) as file:
mesh2 = file.read_mesh(MPI.comm_world, cpp.mesh.GhostMode.none)
assert mesh.num_entities_global(0) == mesh2.num_entities_global(0)
dim = mesh.topology.dim
assert mesh.num_entities_global(dim) == mesh2.num_entities_global(dim)
def test_mesh_function_assign_2D_cells():
mesh = UnitSquareMesh(MPI.comm_world, 3, 3)
ncells = mesh.num_cells()
f = MeshFunction("int", mesh, mesh.topology.dim, 0)
for c in range(ncells):
f.values[c] = ncells - c
g = MeshValueCollection("int", mesh, 2)
g.assign(f)
assert ncells == len(f.values)
assert ncells == g.size()
f2 = MeshFunction("int", mesh, g, 0)
for c in range(mesh.num_cells()):
value = ncells - c
assert value == g.get_value(c, 0)
assert f2.values[c] == g.get_value(c, 0)
h = MeshValueCollection("int", mesh, 2)
global_indices = mesh.topology.global_indices(2)
ncells_global = mesh.num_entities_global(2)
for c in range(mesh.num_cells()):
if global_indices[c] in [5, 8, 10]:
continue
value = ncells_global - global_indices[c]
h.set_value(c, int(value))
f3 = MeshFunction("int", mesh, h, 0)
values = f3.values
values[values > ncells_global] = 0.
assert MPI.sum(mesh.mpi_comm(), values.sum() * 1.0) == 140.
def test_mesh_function_assign_2D_cells():
mesh = UnitSquareMesh(MPI.comm_world, 3, 3)
ncells = mesh.num_cells()
f = MeshFunction("int", mesh, mesh.topology.dim, 0)
for cell in Cells(mesh):
f[cell] = ncells - cell.index()
g = MeshValueCollection("int", mesh, 2)
g.assign(f)
assert ncells == f.size()
assert ncells == g.size()
f2 = MeshFunction("int", mesh, g, 0)
for cell in Cells(mesh):
value = ncells - cell.index()
assert value == g.get_value(cell.index(), 0)
assert f2[cell] == g.get_value(cell.index(), 0)
h = MeshValueCollection("int", mesh, 2)
global_indices = mesh.topology.global_indices(2)
ncells_global = mesh.num_entities_global(2)
for cell in Cells(mesh):
if global_indices[cell.index()] in [5, 8, 10]:
continue
value = ncells_global - global_indices[cell.index()]
h.set_value(cell.index(), int(value))
f3 = MeshFunction("int", mesh, h, 0)
values = f3.array()
values[values > ncells_global] = 0.
assert MPI.sum(mesh.mpi_comm(), values.sum() * 1.0) == 140.
def test_UnitSquareMeshDistributed():
"""Create mesh of unit square."""
mesh = UnitSquareMesh(MPI.comm_world, 5, 7)
assert mesh.num_entities_global(0) == 48
assert mesh.num_entities_global(2) == 70
assert mesh.geometry.dim == 2
assert MPI.sum(mesh.mpi_comm(), mesh.topology.ghost_offset(0)) == 48
def test_ghost_2d(mode):
N = 8
num_cells = N * N * 2
mesh = UnitSquareMesh(MPI.comm_world, N, N, ghost_mode=mode)
if MPI.size(mesh.mpi_comm()) > 1:
assert MPI.sum(mesh.mpi_comm(), mesh.num_cells()) > num_cells
assert mesh.num_entities_global(0) == 81
assert mesh.num_entities_global(2) == num_cells
def test_small_mesh():
mesh3d = UnitCubeMesh(MPI.comm_world, 1, 1, 1)
gdim = mesh3d.geometry.dim
assert mesh3d.num_entities_global(gdim) == 6
mesh2d = UnitSquareMesh(MPI.comm_world, 1, 1)
gdim = mesh2d.geometry.dim
assert mesh2d.num_entities_global(gdim) == 2
mesh1d = UnitIntervalMesh(MPI.comm_world, 2)
gdim = mesh1d.geometry.dim
assert mesh1d.num_entities_global(gdim) == 2
def test_RefineUnitSquareMesh():
"""Refine mesh of unit square."""
mesh = UnitSquareMesh(MPI.comm_world, 5, 7)
mesh = refine(mesh, False)
assert mesh.num_entities_global(0) == 165
assert mesh.num_entities_global(2) == 280
def test_UnitQuadMesh():
mesh = UnitSquareMesh(MPI.comm_world, 5, 7, CellType.Type.quadrilateral)
assert mesh.num_entities_global(0) == 48
assert mesh.num_entities_global(2) == 35
assert mesh.geometry.dim == 2
def test_UnitSquareMeshDistributed():
"""Create mesh of unit square."""
mesh = UnitSquareMesh(MPI.comm_world, 5, 7)
assert mesh.num_entities_global(0) == 48
assert mesh.num_entities_global(2) == 70
assert mesh.geometry.dim == 2
def test_UnitQuadMesh():
mesh = UnitSquareMesh(MPI.comm_world, 5, 7, CellType.quadrilateral)
assert mesh.num_entities_global(0) == 48
assert mesh.num_entities_global(2) == 35
assert mesh.geometry.dim == 2
assert MPI.sum(mesh.mpi_comm(), mesh.topology.ghost_offset(0)) == 48
