def test_json_equals_except_ids(dicom_file_path, expected_bundle):
json_bundle = convert_sr_to_fhir_bundle(dicom_file_path)
expected_json = json.loads(expected_bundle)
result = json_compare.are_same(expected_json, json_bundle, True,
["reference", "id"])
print(result)
assert result[0]
def test_report_reference_fit(dicom_file_path):
json_bundle = convert_sr_to_fhir_bundle(dicom_file_path)
diagnostic_report_resources = get_resources_of_type(
json_bundle, "DiagnosticReport")
assert len(diagnostic_report_resources) == 1
results = diagnostic_report_resources[0]["result"]
observation_references = [result["reference"] for result in results]
for observation in get_resources_of_type(json_bundle, "Observation"):
assert "Observation/" + observation["id"] in observation_references
def test_patient_reference_fit(dicom_file_path):
json_bundle = convert_sr_to_fhir_bundle(dicom_file_path)
patient_resources = get_resources_of_type(json_bundle, "Patient")
assert len(patient_resources) == 1
patient = patient_resources[0]
patient_id = patient["id"]
for diagnostic_report in get_resources_of_type(json_bundle,
"DiagnosticReport"):
assert diagnostic_report["subject"][
"reference"] == "Patient/" + patient_id
for imaging_study in get_resources_of_type(json_bundle, "ImagingStudy"):
assert imaging_study["patient"]["reference"] == "Patient/" + patient_id
for observation in get_resources_of_type(json_bundle, "Observation"):
assert observation["subject"]["reference"] == "Patient/" + patient_id
def test_bundle_structure(dicom_file_path):
json_bundle = convert_sr_to_fhir_bundle(dicom_file_path)
for entry in json_bundle["entry"]:
assert "resource" in entry
assert "request" in entry
def test_conversion_produces_json(dicom_file_path):
json_bundle = convert_sr_to_fhir_bundle(dicom_file_path)
assert type(json_bundle) is dict