#: compute box dimensions
NLAYERS, HEIGHT, WIDTH = 58, 96, 96
#: illumination wavelengths in nm
WAVELENGTHS = np.linspace(380, 780, 9)
#: create some experimental data (stack)
optical_data = dtmm.nematic_droplet_data((NLAYERS, HEIGHT, WIDTH),
radius=30,
profile="r",
no=1.5,
ne=1.6,
nhost=1.5)
#optical_data[0][...]=1
#optical_data[1][0,...]=1
#optical_data[1][-1,...]=1
window = dtmm.aperture((96, 96), 0.95, 0.)
window = None
#: create non-polarized input light
field_data_in = dtmm.illumination_data((HEIGHT, WIDTH),
WAVELENGTHS,
beta=0.,
pixelsize=PIXELSIZE,
window=window)
f, w, p = dtmm.transfer_field(field_data_in,
optical_data,
beta=0.,
phi=0.,
betamax=0.8,
method="4x4",
ret_bulk=True,
for i in range(size):
if (i // period) % 2 == 0:
out.append(n1**2)
else:
out.append(n2**2)
return np.array(out)
#e=e + 1j
mod = (1 +
1 * np.sin(np.linspace(0, np.pi / 2048 * PIXELSIZE * WIDTH, WIDTH))**2)
mod = eps_periodic()
e[..., 2] = mod[None, None, :]
window = dtmm.aperture((HEIGHT, WIDTH), 0.1, 1)
#: create non-polarized input light
field_data_in = dtmm.illumination_data((HEIGHT, WIDTH),
WAVELENGTHS,
jones=(1, 0),
pixelsize=PIXELSIZE,
window=window)
#: transfer input light through stack
f, w, p = dtmm.transfer_field(field_data_in, (d, e, a),
betamax=np.inf,
diffraction=1)
ff = np.fft.fftshift(dtmm.fft.fft2(f), axes=(-2, -1))
i = dtmm.field2specter(ff)
cmf = dtmm.load_tcmf(w)
"""EM field example"""
import dtmm
import numpy as np
import matplotlib.pyplot as plt
WAVELENGTHS = [500, 600]
SIZE = (128, 128)
window = dtmm.aperture((128, 128))
field_data = dtmm.illumination_data(SIZE,
WAVELENGTHS,
window=window,
jones=(1, 0),
pixelsize=200,
beta=(0, 0.1, 0.2),
phi=(0., 0., np.pi / 6))
field = field_data[0]
#500nm
Ex = field[:, 0, 0] #Ex of the x-polarized light
subplots1 = [plt.subplot(i) for i in (231, 232, 233)]
subplots2 = [plt.subplot(i) for i in (234, 235, 236)]
for i, ax in enumerate(subplots1):
ax.imshow(Ex[i].real, origin="lower")
import numpy as np
#: pixel size in nm
PIXELSIZE = 200
#: compute box dimensions
NLAYERS, HEIGHT, WIDTH = 60, 96, 96
#: illumination wavelengths in nm
WAVELENGTHS = np.linspace(380, 780, 9)
#: create some experimental data (stack)
optical_data = dtmm.nematic_droplet_data((NLAYERS, HEIGHT, WIDTH),
radius=30,
profile="r",
no=1.5,
ne=1.6,
nhost=1.5)
window = dtmm.aperture((96, 96))
#: create non-polarized input light
field_data_in = dtmm.field.illumination_data((HEIGHT, WIDTH),
WAVELENGTHS,
pixelsize=PIXELSIZE)
#: transfer input light through stack
field_data_out = dtmm.transfer_field(field_data_in, optical_data)
#: visualize output field
viewer = dtmm.field_viewer(field_data_out)
viewer.set_parameters(sample=0,
intensity=2,
polarizer=0,
focus=-14,
analyzer=90)
