def get_resolved_jbors(resolved_thing, orig_thing, resolved_jbors):
if resolved_thing == orig_thing:
return
if is_job_ref(orig_thing):
jbor_str = jbor_to_str(orig_thing)
if jbor_str not in resolved_jbors:
try:
from dxpy.api import job_describe
job_output = job_describe(get_job_from_jbor(orig_thing)).get('output')
if job_output is not None:
field_value = job_output.get(get_field_from_jbor(orig_thing))
jbor_index = get_index_from_jbor(orig_thing)
if jbor_index is not None:
if isinstance(field_value, list):
resolved_jbors[jbor_str] = field_value[jbor_index]
else:
resolved_jbors[jbor_str] = field_value
except:
# Just don't report any resolved JBORs if there are
# any problems
pass
elif isinstance(orig_thing, list):
for i in range(len(orig_thing)):
get_resolved_jbors(resolved_thing[i], orig_thing[i], resolved_jbors)
elif isinstance(orig_thing, dict) and '$dnanexus_link' not in orig_thing:
for key in orig_thing:
get_resolved_jbors(resolved_thing[key], orig_thing[key], resolved_jbors)
def get_resolved_jbors(resolved_thing, orig_thing, resolved_jbors):
if resolved_thing == orig_thing:
return
if is_job_ref(orig_thing):
jbor_str = jbor_to_str(orig_thing)
if jbor_str not in resolved_jbors:
try:
from dxpy.api import job_describe
job_output = job_describe(
get_job_from_jbor(orig_thing)).get('output')
if job_output is not None:
field_value = job_output.get(
get_field_from_jbor(orig_thing))
jbor_index = get_index_from_jbor(orig_thing)
if jbor_index is not None:
if isinstance(field_value, list):
resolved_jbors[jbor_str] = field_value[jbor_index]
else:
resolved_jbors[jbor_str] = field_value
except:
# Just don't report any resolved JBORs if there are
# any problems
pass
elif isinstance(orig_thing, list):
for i in range(len(orig_thing)):
get_resolved_jbors(resolved_thing[i], orig_thing[i],
resolved_jbors)
elif isinstance(orig_thing, dict) and '$dnanexus_link' not in orig_thing:
for key in orig_thing:
get_resolved_jbors(resolved_thing[key], orig_thing[key],
resolved_jbors)
