def _step(self, loader, update, log, reporting_fns, verbose=None):
steps = len(loader)
pg = create_progress_bar(steps)
cm = ConfusionMatrix(self.labels)
epoch_loss = 0
epoch_div = 0
for batch_dict in pg(loader):
dy.renew_cg()
inputs = self.model.make_input(batch_dict)
ys = inputs.pop('y')
preds = self.model.forward(inputs)
losses = self.model.loss(preds, ys)
loss = dy.mean_batches(losses)
batchsz = self._get_batchsz(batch_dict)
lossv = loss.npvalue().item() * batchsz
epoch_loss += lossv
epoch_div += batchsz
_add_to_cm(cm, ys, preds.npvalue())
update(loss)
log(self.optimizer.global_step, lossv, batchsz, reporting_fns)
metrics = cm.get_all_metrics()
metrics['avg_loss'] = epoch_loss / float(epoch_div)
verbose_output(verbose, cm)
return metrics
def act(self, obs):
dy.renew_cg()
action = self.actor(obs).npvalue()
if self.noise_stddev > 0:
noise = np.random.randn(self.action_dim) * self.noise_stddev
action += noise
return np.clip(action, -1, 1)
def predict(self, batch_dict):
dy.renew_cg()
inputs = self.make_input(batch_dict)
lengths = inputs['lengths']
unaries = self.compute_unaries(inputs)
if self.do_crf is True:
best_path, path_score = self.crf.decode(unaries)
elif self.constraint is not None:
best_path, path_score = viterbi(
unaries,
dy.log_softmax(dy.inputTensor(self.constraint[1] * -1e4)),
Offsets.GO, Offsets.EOS,
norm=True
)
else:
best_path = [np.argmax(x.npvalue(), axis=0) for x in unaries]
# TODO: RN using autobatching, so none of this is really useful
# If we want to support batching in this function we have to either loop over the batch
# or we can just simplify all this code here
best_path = np.stack(best_path).reshape(-1, 1) # (T, B)
best_path = best_path.transpose(1, 0)
results = []
for b in range(best_path.shape[0]):
sentence = best_path[b, :lengths[b]]
results.append(sentence)
return results
def generate(sent):
dy.renew_cg()
src = sent
#initialize the LSTM
init_state_src = LSTM_SRC_BUILDER.initial_state()
#get the output of the first LSTM
src_output = init_state_src.add_inputs([LOOKUP_SRC[x] for x in src])[-1].output()
#generate until a eos tag or max is reached
current_state = LSTM_TRG_BUILDER.initial_state().set_s([src_output, dy.tanh(src_output)])
prev_word = sos_trg
trg_sent = []
W_sm = dy.parameter(W_sm_p)
b_sm = dy.parameter(b_sm_p)
for i in range(MAX_SENT_SIZE):
#feed the previous word into the lstm, calculate the most likely word, add it to the sentence
current_state = current_state.add_input(LOOKUP_TRG[prev_word])
output_embedding = current_state.output()
s = dy.affine_transform([b_sm, W_sm, output_embedding])
probs = (-dy.log_softmax(s)).value()
next_word = np.argmax(probs)
if next_word == eos_trg:
break
prev_word = next_word
trg_sent.append(i2w_trg[next_word])
return trg_sent
def calc_scores(words): # Create a computation graph, and add parameters dy.renew_cg() # Take the sum of all the embedding vectors for each word score = dy.esum([dy.lookup(W, x) for x in words]) # Add the bias vector and return return score + b
def test_update(self):
ones=np.ones((10, 10))
updated = np.ones((10, 10)) * 0.99
gradient = np.ones((10, 10)) * 0.01
dy.renew_cg()
pp1 = dy.parameter(self.p1)
pp2 = dy.parameter(self.p2)
a = pp1 * self.lp1[1]
b = pp2 * self.lp2[1]
l = dy.dot_product(a, b) / 100
self.assertEqual(l.scalar_value(),10,msg=str(l.scalar_value()))
l.backward()
self.assertTrue(np.allclose(self.p1.grad_as_array(), 0.1 * ones),msg=np.array_str(self.p1.grad_as_array()))
self.assertTrue(np.allclose(self.p2.grad_as_array(), 0.1 * ones),msg=np.array_str(self.p2.grad_as_array()))
self.assertTrue(np.allclose(self.lp1.grad_as_array()[1], ones[0]),msg=np.array_str(self.lp1.grad_as_array()))
self.assertTrue(np.allclose(self.lp2.grad_as_array()[1], ones[0]),msg=np.array_str(self.lp2.grad_as_array()))
self.trainer.update()
self.assertTrue(np.allclose(self.p1.as_array(), ones * 0.99),msg=np.array_str(self.p1.as_array()))
self.assertTrue(np.allclose(self.p2.as_array(), ones * 0.99),msg=np.array_str(self.p2.as_array()))
self.assertTrue(np.allclose(self.lp1.as_array()[1], ones[0] * 0.9),msg=np.array_str(self.lp1.as_array()[1]))
self.assertTrue(np.allclose(self.lp2.as_array()[1], ones[0] * 0.9),msg=np.array_str(self.lp2.as_array()))
def calc_predict_and_activations(wids, tag, words):
dy.renew_cg()
if len(wids) < WIN_SIZE:
wids += [0] * (WIN_SIZE-len(wids))
cnn_in = dy.concatenate([dy.lookup(W_emb, x) for x in wids], d=1)
cnn_out = dy.conv2d_bias(cnn_in, W_cnn, b_cnn, stride=(1, 1), is_valid=False)
filters = (dy.reshape(cnn_out, (len(wids), FILTER_SIZE))).npvalue()
activations = filters.argmax(axis=0)
pool_out = dy.max_dim(cnn_out, d=1)
pool_out = dy.reshape(pool_out, (FILTER_SIZE,))
pool_out = dy.rectify(pool_out)
scores = (W_sm * pool_out + b_sm).npvalue()
print ('%d ||| %s' % (tag, ' '.join(words)))
predict = np.argmax(scores)
print (display_activations(words, activations))
print ('scores=%s, predict: %d' % (scores, predict))
features = pool_out.npvalue()
W = W_sm.npvalue()
bias = b_sm.npvalue()
print (' bias=%s' % bias)
contributions = W * features
print (' very bad (%.4f): %s' % (scores[0], contributions[0]))
print (' bad (%.4f): %s' % (scores[1], contributions[1]))
print (' neutral (%.4f): %s' % (scores[2], contributions[2]))
print (' good (%.4f): %s' % (scores[3], contributions[3]))
print ('very good (%.4f): %s' % (scores[4], contributions[4]))
def test_gradient_sanity(self):
dy.renew_cg()
x=dy.inputTensor(self.v1)
y=dy.inputTensor(self.v2)
l = dy.dot_product(x,y)
l.forward()
self.assertRaises(RuntimeError, gradient_callable, x)
def test_update(self):
ones = np.ones((10, 10))
dy.renew_cg()
a = self.p1 * self.lp1[1]
b = self.p2 * self.lp2[1]
loss = dy.dot_product(a, b) / 100
self.assertEqual(loss.scalar_value(), 10, msg=str(loss.scalar_value()))
loss.backward()
# Check the gradients
self.assertTrue(np.allclose(self.p1.grad_as_array(), 0.1 * ones),
msg=np.array_str(self.p1.grad_as_array()))
self.assertTrue(np.allclose(self.p2.grad_as_array(), 0.1 * ones),
msg=np.array_str(self.p2.grad_as_array()))
self.assertTrue(np.allclose(self.lp1.grad_as_array()[1], ones[
0]), msg=np.array_str(self.lp1.grad_as_array()))
self.assertTrue(np.allclose(self.lp2.grad_as_array()[1], ones[
0]), msg=np.array_str(self.lp2.grad_as_array()))
self.trainer.update()
# Check the updated parameters
self.assertTrue(np.allclose(self.p1.as_array(), ones * 0.99),
msg=np.array_str(self.p1.as_array()))
self.assertTrue(np.allclose(self.p2.as_array(), ones * 0.99),
msg=np.array_str(self.p2.as_array()))
self.assertTrue(np.allclose(self.lp1.as_array()[1], ones[
0] * 0.9), msg=np.array_str(self.lp1.as_array()[1]))
self.assertTrue(np.allclose(self.lp2.as_array()[1], ones[
0] * 0.9), msg=np.array_str(self.lp2.as_array()))
def train(epoch):
model.training = True
train_loss = 0
train_loader = generate_batch_loader(train_data, batch_size=batch_size)
for batch_idx, data in enumerate(train_loader):
# Dymanic Construction of Graph
dy.renew_cg()
x = dy.inputTensor(data.reshape(-1, 784).T)
recon_x, mu, logvar = model.forward(x)
loss = loss_function(recon_x, x, mu, logvar)
# Forward
loss_value = loss.value()
train_loss += loss_value
# Backward
loss.backward()
optimizer.update()
if batch_idx % args.log_interval == 0:
print('Train Epoch: {} [{}/{} ({:.0f}%)]\tLoss: {:.6f}'.format(
epoch, batch_idx * len(data), len(train_data),
100. * batch_idx / (len(train_data) / batch_size),
loss_value / len(data)))
print('====> Epoch: {} Average loss: {:.4f}'.format(
epoch, train_loss / len(train_data)))
def test(epoch):
model.training = False
test_loss = 0
test_loader = generate_batch_loader(test_data, batch_size=batch_size)
for i, data in enumerate(test_loader):
# Dymanic Construction of Graph
dy.renew_cg()
x = dy.inputTensor(data.reshape(-1, 784).T)
recon_x, mu, logvar = model.forward(x)
loss = loss_function(recon_x, x, mu, logvar)
# Forward
loss_value = loss.value()
test_loss += loss_value
if i == 0:
n = min(data.shape[0], 8)
comparison = np.concatenate([data[:n],
recon_x.npvalue().T.reshape(batch_size, 1, 28, 28)[:n]])
save_image(comparison,
'results/reconstruction_' + str(epoch) + '.png', nrow=n)
test_loss /= len(test_data)
print('====> Test set loss: {:.4f}'.format(test_loss))
def test(self, loader, reporting_fns, phase, **kwargs):
metrics = {}
total_loss = 0.0
total_toks = 0
initial_state = None
start = time.time()
for batch_dict in loader:
dy.renew_cg()
inputs = self.model.make_input(batch_dict)
y = inputs.pop('y')
output, initial_state = self.model.forward(inputs, initial_state, train=False)
loss = self._loss(output, y)
toks = self._num_toks(batch_dict)
loss_val = loss.npvalue().item() * toks
total_loss += loss_val
total_toks += toks
if initial_state is not None:
initial_state = [x.npvalue() for x in initial_state]
epochs = 0
if phase == 'Valid':
self.valid_epochs += 1
epochs = self.valid_epochs
metrics = self.calc_metrics(total_loss, total_toks)
self.report(
epochs, metrics, start,
phase, 'EPOCH', reporting_fns
)
return metrics
def test_pick_batch_elems(self):
dy.renew_cg()
x = dy.lookup_batch(self.p, [0, 1])
y = dy.pick_batch_elems(x, [0])
self.assertTrue(np.allclose(y.npvalue(), self.pval[0]))
z = dy.pick_batch_elems(x, [0, 1])
self.assertTrue(np.allclose(z.npvalue(), self.pval.T))
def test_concatenate_to_batch(self):
dy.renew_cg()
x = dy.lookup_batch(self.p, [0, 1])
y = dy.pick_batch_elem(x, 0)
z = dy.pick_batch_elem(x, 1)
w = dy.concatenate_to_batch([y, z])
self.assertTrue(np.allclose(w.npvalue(), self.pval.T))
def test_inputTensor_batched_list(self):
for i in range(4):
dy.renew_cg()
input_tensor = self.input_vals.reshape(self.shapes[i])
xb = dy.inputTensor([np.asarray(x).transpose()
for x in input_tensor.transpose()])
self.assertEqual(
xb.dim()[0],
(self.shapes[i][:-1] if i > 0 else (1,)),
msg="Dimension mismatch"
)
self.assertEqual(
xb.dim()[1],
self.shapes[i][-1],
msg="Dimension mismatch"
)
self.assertTrue(
np.allclose(xb.npvalue(), input_tensor),
msg="Expression value different from initial value"
)
self.assertEqual(
dy.sum_batches(dy.squared_norm(xb)).scalar_value(),
self.squared_norm,
msg="Value mismatch"
)
def calc_loss(sent):
dy.renew_cg()
# Transduce all batch elements with an LSTM
src = sent[0]
trg = sent[1]
#initialize the LSTM
init_state_src = LSTM_SRC_BUILDER.initial_state()
#get the output of the first LSTM
src_output = init_state_src.add_inputs([LOOKUP_SRC[x] for x in src])[-1].output()
#now step through the output sentence
all_losses = []
current_state = LSTM_TRG_BUILDER.initial_state().set_s([src_output, dy.tanh(src_output)])
prev_word = trg[0]
W_sm = dy.parameter(W_sm_p)
b_sm = dy.parameter(b_sm_p)
for next_word in trg[1:]:
#feed the current state into the
current_state = current_state.add_input(LOOKUP_TRG[prev_word])
output_embedding = current_state.output()
s = dy.affine_transform([b_sm, W_sm, output_embedding])
all_losses.append(dy.pickneglogsoftmax(s, next_word))
prev_word = next_word
return dy.esum(all_losses)
def calc_scores(words):
dy.renew_cg()
word_embs = [dy.lookup(W_emb, x) for x in words]
fwd_init = fwdLSTM.initial_state()
fwd_embs = fwd_init.transduce(word_embs)
bwd_init = bwdLSTM.initial_state()
bwd_embs = bwd_init.transduce(reversed(word_embs))
return W_sm * dy.concatenate([fwd_embs[-1], bwd_embs[-1]]) + b_sm
def test_gradient(self):
dy.renew_cg()
x=dy.inputTensor(self.v1)
y=dy.inputTensor(self.v2)
l = dy.dot_product(x,y)
l.forward()
l.backward(full=True)
self.assertTrue(np.allclose(x.gradient(), self.v2),msg="{}\n{}\n{}".format(l.value(),x.gradient(),self.v2,y.gradient(),self.v2))
def test_get_parameters(self):
dy.renew_cg()
self.rnn.initial_state()
P_p = self.rnn.get_parameters()
P_e = self.rnn.get_parameter_expressions()
for l_p,l_e in zip(P_p,P_e):
for w_p,w_e in zip(l_p,l_e):
self.assertTrue(np.allclose(w_e.npvalue(),w_p.as_array()))
def calc_loss(sents):
dy.renew_cg()
# Transduce all batch elements with an LSTM
src_sents = [x[0] for x in sents]
tgt_sents = [x[1] for x in sents]
src_cws = []
src_len = [len(sent) for sent in src_sents]
max_src_len = np.max(src_len)
num_words = 0
for i in range(max_src_len):
src_cws.append([sent[i] for sent in src_sents])
#initialize the LSTM
init_state_src = LSTM_SRC_BUILDER.initial_state()
#get the output of the first LSTM
src_output = init_state_src.add_inputs([dy.lookup_batch(LOOKUP_SRC, cws) for cws in src_cws])[-1].output()
#now decode
all_losses = []
# Decoder
#need to mask padding at end of sentence
tgt_cws = []
tgt_len = [len(sent) for sent in sents]
max_tgt_len = np.max(tgt_len)
masks = []
for i in range(max_tgt_len):
tgt_cws.append([sent[i] if len(sent) > i else eos_trg for sent in tgt_sents])
mask = [(1 if len(sent) > i else 0) for sent in tgt_sents]
masks.append(mask)
num_words += sum(mask)
current_state = LSTM_TRG_BUILDER.initial_state().set_s([src_output, dy.tanh(src_output)])
prev_words = tgt_cws[0]
W_sm = dy.parameter(W_sm_p)
b_sm = dy.parameter(b_sm_p)
for next_words, mask in zip(tgt_cws[1:], masks):
#feed the current state into the
current_state = current_state.add_input(dy.lookup_batch(LOOKUP_TRG, prev_words))
output_embedding = current_state.output()
s = dy.affine_transform([b_sm, W_sm, output_embedding])
loss = (dy.pickneglogsoftmax_batch(s, next_words))
mask_expr = dy.inputVector(mask)
mask_expr = dy.reshape(mask_expr, (1,),len(sents))
mask_loss = loss * mask_expr
all_losses.append(mask_loss)
prev_words = next_words
return dy.sum_batches(dy.esum(all_losses)), num_words
def test_param_change_after_update(self):
for trainer_type in dy.SimpleSGDTrainer, dy.AdamTrainer:
trainer = trainer_type(self.m)
for _ in range(100):
p = self.m.add_parameters((1,))
dy.renew_cg()
p.forward()
p.backward()
trainer.update()
def calc_loss(words, labels, heads):
dy.renew_cg()
word_embs = [dy.lookup(W_emb, x) for x in words]
fwd_init = fwdLSTM.initial_state()
fwd_embs = fwd_init.transduce(word_embs)
bwd_init = bwdLSTM.initial_state()
bwd_embs = bwd_init.transduce(reversed(word_embs))
src_encodings = [dy.reshape(dy.concatenate([f, b]), (HID_SIZE * 2, 1)) for f, b in zip(fwd_embs, reversed(bwd_embs))]
return biaffineParser.decode_loss(src_encodings, ([heads], [labels]))
def calc_acc(words, labels, heads):
dy.renew_cg()
word_embs = [dy.lookup(W_emb, x) for x in words]
fwd_init = fwdLSTM.initial_state()
fwd_embs = fwd_init.transduce(word_embs)
bwd_init = bwdLSTM.initial_state()
bwd_embs = bwd_init.transduce(reversed(word_embs))
src_encodings = [dy.reshape(dy.concatenate([f, b]), (HID_SIZE * 2, 1)) for f, b in zip(fwd_embs, reversed(bwd_embs))]
pred_heads, pred_labels = biaffineParser.decoding(src_encodings)
return biaffineParser.cal_accuracy(pred_heads, pred_labels, heads, labels)
def test_save_load(self):
self.p.forward()
self.p.backward()
self.t.update()
dy.renew_cg()
v1 = self.p.value()
dy.save(self.file, [self.p])
[p2] = dy.load(self.file, self.m2)
v2 = p2.value()
self.assertTrue(np.allclose(v1, v2))
def renew_cg(self):
# renew the compute graph for every single instance
dy.renew_cg()
param_exprs = dict()
param_exprs['U'] = dy.parameter(self.params['word_score_U'])
param_exprs['pW'] = dy.parameter(self.params['predict_W'])
param_exprs['pb'] = dy.parameter(self.params['predict_b'])
param_exprs['<bos>'] = dy.parameter(self.params['<BoS>'])
self.param_exprs = param_exprs
def calc_loss(sent):
dy.renew_cg()
# Transduce all batch elements with an LSTM
src = sent[0]
trg = sent[1]
# initialize the LSTM
init_state_src = LSTM_SRC_BUILDER.initial_state()
# get the output of the first LSTM
src_output = init_state_src.add_inputs([LOOKUP_SRC[x] for x in src])[-1].output()
# Now compute mean and standard deviation of source hidden state.
W_mean = dy.parameter(W_mean_p)
V_mean = dy.parameter(V_mean_p)
b_mean = dy.parameter(b_mean_p)
W_var = dy.parameter(W_var_p)
V_var = dy.parameter(V_var_p)
b_var = dy.parameter(b_var_p)
# The mean vector from the encoder.
mu = mlp(src_output, W_mean, V_mean, b_mean)
# This is the diagonal vector of the log co-variance matrix from the encoder
# (regard this as log variance is easier for furture implementation)
log_var = mlp(src_output, W_var, V_var, b_var)
# Compute KL[N(u(x), sigma(x)) || N(0, I)]
# 0.5 * sum(1 + log(sigma^2) - mu^2 - sigma^2)
kl_loss = -0.5 * dy.sum_elems(1 + log_var - dy.pow(mu, dy.inputVector([2])) - dy.exp(log_var))
z = reparameterize(mu, log_var)
# now step through the output sentence
all_losses = []
current_state = LSTM_TRG_BUILDER.initial_state().set_s([z, dy.tanh(z)])
prev_word = trg[0]
W_sm = dy.parameter(W_sm_p)
b_sm = dy.parameter(b_sm_p)
for next_word in trg[1:]:
# feed the current state into the
current_state = current_state.add_input(LOOKUP_TRG[prev_word])
output_embedding = current_state.output()
s = dy.affine_transform([b_sm, W_sm, output_embedding])
all_losses.append(dy.pickneglogsoftmax(s, next_word))
prev_word = next_word
softmax_loss = dy.esum(all_losses)
return kl_loss, softmax_loss
def calc_scores(wids):
dy.renew_cg()
if len(wids) < WIN_SIZE:
wids += [0] * (WIN_SIZE-len(wids))
cnn_in = dy.concatenate([dy.lookup(W_emb, x) for x in wids], d=1)
cnn_out = dy.conv2d_bias(cnn_in, W_cnn, b_cnn, stride=(1, 1), is_valid=False)
pool_out = dy.max_dim(cnn_out, d=1)
pool_out = dy.reshape(pool_out, (FILTER_SIZE,))
pool_out = dy.rectify(pool_out)
return W_sm * pool_out + b_sm
def calc_scores(words):
dy.renew_cg()
# Transduce all batch elements with an LSTM
word_reps = LSTM.transduce([LOOKUP[x] for x in words])
# Softmax scores
W = dy.parameter(W_sm)
b = dy.parameter(b_sm)
scores = [dy.affine_transform([b, W, x]) for x in word_reps]
return scores
def generate_sent():
dy.renew_cg()
hist = [S] * N
sent = []
while True:
p = dy.softmax(calc_score_of_history(hist)).npvalue()
next_word = np.random.choice(nwords, p=p/p.sum())
if next_word == S or len(sent) == MAX_LEN:
break
sent.append(next_word)
hist = hist[1:] + [next_word]
return sent
def calc_sent_loss(sent):
# Create a computation graph
dy.renew_cg()
# The initial history is equal to end of sentence symbols
hist = [S] * N
# Step through the sentence, including the end of sentence token
all_losses = []
for next_word in sent + [S]:
s = calc_score_of_history(hist)
all_losses.append(dy.pickneglogsoftmax(s, next_word))
hist = hist[1:] + [next_word]
return dy.esum(all_losses)
def calc_scores(tree): dy.renew_cg() emb = builder.expr_for_tree(tree) W_sm_exp = dy.parameter(W_sm) b_sm_exp = dy.parameter(b_sm) return W_sm_exp * emb + b_sm_exp
def _train(self,
sentences,
transition_system,
evaluate,
relations,
triggers=None):
start_chunk = time.time()
start_all = time.time()
loss_chunk = 0
loss_all = 0
total_chunk = 0
total_all = 0
losses = []
self.set_empty_vector()
for i, sentence in enumerate(sentences):
if i != 0 and i % 100 == 0:
end = time.time()
print(
f'count: {i}\tloss: {loss_chunk/total_chunk:.4f}\ttime: {end-start_chunk:,.2f} secs'
)
start_chunk = end
loss_chunk = 0
total_chunk = 0
if len(sentence) > 2:
for e in sentence:
e.children = []
# assign embedding to each word
features = self.extract_features(sentence, drop_word=True)
# initialize sentence parse
state = transition_system(sentence)
# parse sentence
while not state.is_terminal():
outputs = evaluate(state.stack, state.buffer, features)
if triggers:
dy_op_scores, dy_lbl_scores, dy_tg_scores = outputs
np_tg_scores = dy_tg_scores.npvalue()
else:
dy_op_scores, dy_lbl_scores = outputs
# get scores in numpy arrays
np_op_scores = dy_op_scores.npvalue()
np_lbl_scores = dy_lbl_scores.npvalue()
# collect all legal transitions
legal_transitions = []
if triggers:
for lt in state.all_legal():
ix = state.t2i[lt]
if lt == "shift":
for j, tg in enumerate(triggers[1:], start=2):
if (hasattr(state.buffer[0], 'is_parent')
and state.buffer[0].is_parent
and j == 1):
continue
t = new_Transition(
lt, None, tg, np_op_scores[ix] +
np_lbl_scores[0] + np_tg_scores[j],
dy_op_scores[ix] + dy_lbl_scores[0] +
dy_tg_scores[j])
legal_transitions.append(t)
if lt == "drop":
t = new_Transition(
lt, None, "O", np_op_scores[ix] +
np_lbl_scores[0] + np_tg_scores[1],
dy_op_scores[ix] + dy_lbl_scores[0] +
dy_tg_scores[1])
legal_transitions.append(t)
t = new_Transition(
lt, None, "Protein", np_op_scores[ix] +
np_lbl_scores[0] + np_tg_scores[4],
dy_op_scores[ix] + dy_lbl_scores[0] +
dy_tg_scores[4])
legal_transitions.append(t)
if lt in ['left_reduce', 'left_attach']:
for j, r in enumerate(relations):
k = 1 + 2 * j
t = new_Transition(
lt, r, None, np_op_scores[ix] +
np_lbl_scores[k] + np_tg_scores[0],
dy_op_scores[ix] + dy_lbl_scores[k] +
dy_tg_scores[0])
legal_transitions.append(t)
if lt in ['right_reduce', 'right_attach']:
for j, r in enumerate(relations):
k = 2 + 2 * j
t = new_Transition(
lt, r, None, np_op_scores[ix] +
np_lbl_scores[k] + np_tg_scores[0],
dy_op_scores[ix] + dy_lbl_scores[k] +
dy_tg_scores[0])
legal_transitions.append(t)
if lt == "swap":
t = new_Transition(
lt, None, None, np_op_scores[ix] +
np_lbl_scores[0] + np_tg_scores[0],
dy_op_scores[ix] + dy_lbl_scores[0] +
dy_tg_scores[0])
legal_transitions.append(t)
# collect all correct transitions
correct_transitions = []
for t in legal_transitions:
if state.is_correct(t[0]):
relation = state.get_arc_label_for_transition(
t[0])
label = state.get_token_label_for_transition(
t[0])
if t[1] == relation and t[2] == label:
correct_transitions.append(t)
else:
if state.is_legal('shift'):
ix = state.t2i['shift']
t = Transition('shift', None, None,
np_op_scores[ix] + np_lbl_scores[0],
dy_op_scores[ix] + dy_lbl_scores[0])
legal_transitions.append(t)
if state.is_legal('left_arc'):
ix = state.t2i['left_arc']
for j, r in enumerate(relations):
k = 1 + 2 * j
t = Transition(
'left_arc', r, None,
np_op_scores[ix] + np_lbl_scores[k],
dy_op_scores[ix] + dy_lbl_scores[k])
legal_transitions.append(t)
if state.is_legal('right_arc'):
ix = state.t2i['right_arc']
for j, r in enumerate(relations):
k = 2 + 2 * j
t = Transition(
'right_arc', r, None,
np_op_scores[ix] + np_lbl_scores[k],
dy_op_scores[ix] + dy_lbl_scores[k])
legal_transitions.append(t)
if state.is_legal('drop'):
ix = state.t2i['drop']
t = Transition('drop', None, None,
np_op_scores[ix] + np_lbl_scores[0],
dy_op_scores[ix] + dy_lbl_scores[0])
legal_transitions.append(t)
# collect all correct transitions
correct_transitions = []
for t in legal_transitions:
if state.is_correct(t):
if t.op in [
'shift', 'drop'
] or t.label in state.stack[-1].relation:
correct_transitions.append(t)
# select transition
best_correct = max(correct_transitions,
key=attrgetter('score'))
i_correct = legal_transitions.index(best_correct)
legal_scores = dy.concatenate(
[t.dy_score for t in legal_transitions])
loss = dy.hinge(legal_scores, i_correct)
# loss = dy.pickneglogsoftmax(legal_scores, i_correct)
losses.append(loss)
# perform transition
selected = best_correct
state.perform_transition(selected.op, selected.label,
selected.trigger)
# process losses in chunks
if len(losses) > 50:
try:
loss = dy.esum(losses)
l = loss.scalar_value()
loss.backward()
self.trainer.update()
except:
pass
dy.renew_cg()
self.set_empty_vector()
losses = []
loss_chunk += l
loss_all += l
total_chunk += 1
total_all += 1
# consider any remaining losses
if len(losses) > 0:
try:
loss = dy.esum(losses)
loss.scalar_value()
loss.backward()
self.trainer.update()
except:
pass
dy.renew_cg()
self.set_empty_vector()
end = time.time()
print('\nend of epoch')
print(
f'count: {i}\tloss: {loss_all/total_all:.4f}\ttime: {end-start_all:,.2f} secs'
)
def translate_sentence(self, sent):
dy.renew_cg()
W_y = dy.parameter(self.W_y)
b_y = dy.parameter(self.b_y)
W1_att_e = dy.parameter(self.W1_att_e)
W1_att_f = dy.parameter(self.W1_att_f)
w2_att = dy.parameter(self.w2_att)
W1_att_lang = dy.parameter(self.W1_att_lang)
M_s = self.src_lookup
M_t = self.tgt_lookup
src_sent = sent
src_sent_rev = list(reversed(sent))
# Bidirectional representations
l2r_state = self.l2r_builder.initial_state()
r2l_state = self.r2l_builder.initial_state()
l2r_contexts = []
r2l_contexts = []
for (cw_l2r, cw_r2l) in zip(src_sent, src_sent_rev):
l2r_state = l2r_state.add_input(M_s[cw_l2r])
r2l_state = r2l_state.add_input(M_s[cw_r2l])
l2r_contexts.append(
l2r_state.output()) # [<S>, x_1, x_2, ..., </S>]
r2l_contexts.append(
r2l_state.output()) # [</S> x_n, x_{n-1}, ... <S>]
r2l_contexts.reverse() # [<S>, x_1, x_2, ..., </S>]
# Combine the left and right representations for every word
h_fs = []
for (l2r_i, r2l_i) in zip(l2r_contexts, r2l_contexts):
h_fs.append(dy.concatenate([l2r_i, r2l_i]))
encoded_h = h_fs[-1]
h_fs_matrix = dy.concatenate_cols(h_fs)
# Decoder
trans_sentence = [u'<s>']
cw = self.tgt_vocab[u'<s>']
c_t = dy.vecInput(self.hidden_size * 2)
c_t.set([0 for i in xrange(self.contextsize)])
dec_state = self.dec_builder.initial_state([encoded_h])
langid = self.lang_li.index(self.rsrc_vocab[sent[1]])
langeb = dy.lookup(self.langeb_lookup, langid)
while len(trans_sentence) < self.max_len:
embed = dy.lookup(M_t, cw)
dec_state = dec_state.add_input(dy.concatenate([embed, c_t]))
h_e = dec_state.output()
# c_t = self.__attention_mlp(h_fs_matrix, h_e)
c_t = self.__attention_mlp(h_fs_matrix, h_e, W1_att_e, W1_att_f,
w2_att, W1_att_lang, langeb)
# calculate attention
'''
a_t = h_fs_matrix_t * h_e
alignment = dy.softmax(a_t)
c_t = h_fs_matrix * alignment'''
ind_tem = dy.concatenate([h_e, c_t])
ind_tem1 = W_y * ind_tem
ind_tem2 = ind_tem1 + b_y
score = dy.softmax(ind_tem2)
probs1 = score.npvalue()
cw = np.argmax(probs1)
if cw == self.tgt_vocab[u'</s>']:
break
trans_sentence.append(self.rtgt_vocab[cw])
return trans_sentence[1:]
def do_one_example(model,
encoder,
revcoder,
decoder,
encoder_params,
decoder_params,
sentence_de,
sentence_en,
downstream=False,
GRU=False):
dy.renew_cg()
total_words = len(sentence_en)
encoder_lookup = encoder_params["lookup"]
decoder_lookup = decoder_params["lookup"]
R = dy.parameter(decoder_params["R"])
bias = dy.parameter(decoder_params["bias"])
sentence_de_forward = sentence_de
sentence_de_reverse = sentence_de[::-1]
s = encoder.initial_state()
inputs = [dy.lookup(encoder_lookup, de) for de in sentence_de_forward]
states = s.add_inputs(inputs)
encoder_outputs = [s.output() for s in states]
s_reverse = revcoder.initial_state()
inputs = [dy.lookup(encoder_lookup, de) for de in sentence_de_reverse]
states_reverse = s_reverse.add_inputs(inputs)
revcoder_outputs = [s.output() for s in states_reverse]
final_coding_output = encoder_outputs[-1] + revcoder_outputs[-1]
final_state = states[-1].s()
final_state_reverse = states_reverse[-1].s()
if GRU:
final_coding_state = final_state_reverse + final_state
else:
final_coding_state = ((final_state_reverse[0] + final_state[0]),
(final_state_reverse[1] + final_state[1]))
final_combined_outputs = [
revcoder_output + encoder_output for revcoder_output, encoder_output in
zip(revcoder_outputs[::-1], encoder_outputs)
]
s_init = decoder.initial_state().set_s(final_state_reverse)
o_init = s_init.output()
alpha_init = dy.softmax(
dy.concatenate([
dy.dot_product(o_init, final_combined_output)
for final_combined_output in final_combined_outputs
]))
c_init = attend_vector(final_combined_outputs, alpha_init)
s_0 = s_init
o_0 = o_init
alpha_0 = alpha_init
c_0 = c_init
losses = []
for en in sentence_en:
#Calculate loss and append to the losses array
scores = None
if downstream:
scores = R * dy.concatenate([o_0, c_0]) + bias
else:
scores = R * o_0 + bias
loss = dy.pickneglogsoftmax(scores, en)
losses.append(loss)
#Take in input
i_t = dy.concatenate([dy.lookup(decoder_lookup, en), c_0])
s_t = s_0.add_input(i_t)
o_t = s_t.output()
alpha_t = dy.softmax(
dy.concatenate([
dy.dot_product(o_t, final_combined_output)
for final_combined_output in final_combined_outputs
]))
c_t = attend_vector(final_combined_outputs, alpha_t)
#Prepare for the next iteration
s_0 = s_t
o_0 = o_t
c_0 = c_t
alpha_0 = alpha_t
total_loss = dy.esum(losses)
return total_loss, total_words
def get_loss(self, input, output):
dynet.renew_cg()
embedded = self.embed_seq(input)
encoded = self.encode_seq(embedded)
return self.decode(encoded, output)
def beam_search_generate(self, src_seq, beam_n=5):
dynet.renew_cg()
embedded = self.embed_seq(src_seq)
input_vectors = self.encode_seq(embedded)
w = dynet.parameter(self.decoder_w)
b = dynet.parameter(self.decoder_b)
s = self.dec_lstm.initial_state()
s = s.add_input(
dynet.concatenate([
input_vectors[-1],
dynet.vecInput(self.args.hidden_dim * 2),
dynet.vecInput(self.pronouncer.args.hidden_dim * 2)
]))
beams = [{"state": s, "out": [], "err": 0}]
completed_beams = []
while len(completed_beams) < beam_n:
potential_beams = []
for beam in beams:
if len(beam["out"]) > 0:
attn_vector = self.attend(input_vectors, beam["state"])
embed_vector = self.tgt_lookup[beam["out"][-1].i]
spelling = [
self.pronouncer.src_vocab[letter]
for letter in beam["out"][-1].s.upper()
]
embedded_spelling = self.pronouncer.embed_seq(spelling)
pron_vector = self.pronouncer.encode_seq(
embedded_spelling)[-1]
fpv = dynet.nobackprop(pron_vector)
inp = dynet.concatenate([embed_vector, attn_vector, fpv])
s = beam["state"].add_input(inp)
out_vector = w * s.output() + b
probs = dynet.softmax(out_vector)
probs = probs.vec_value()
for potential_next_i in range(len(probs)):
potential_beams.append({
"state":
s,
"out":
beam["out"] + [self.tgt_vocab[potential_next_i]],
"err":
beam["err"] - math.log(probs[potential_next_i])
})
potential_beams.sort(key=lambda x: x["err"])
beams = potential_beams[:beam_n - len(completed_beams)]
completed_beams = completed_beams + [
beam
for beam in beams if beam["out"][-1] == self.tgt_vocab.END_TOK
or len(beam["out"]) > 5 * len(src_seq)
]
beams = [
beam for beam in beams
if beam["out"][-1] != self.tgt_vocab.END_TOK
and len(beam["out"]) <= 5 * len(src_seq)
]
completed_beams.sort(key=lambda x: x["err"])
return [beam["out"] for beam in completed_beams]
def start_batch(self):
dy.renew_cg()
self.batch_loss = []
def test_value_sanity(self):
dy.renew_cg()
x = dy.inputTensor(self.v1)
dy.renew_cg()
self.assertRaises(RuntimeError, npvalue_callable, x)
def test_inputTensor_except(self):
dy.renew_cg()
self.assertRaises(TypeError, dy.inputTensor, batched=True)
def parse(self, t, oracle_actions=None):
dy.renew_cg()
if oracle_actions:
oracle_actions = list(oracle_actions)
oracle_actions.reverse()
stack_top = self.stackRNN.initial_state()
toks = list(t)
toks.reverse()
stack = []
cur = self.buffRNN.initial_state()
buffer = []
empty_buffer_emb = dy.parameter(self.pempty_buffer_emb)
W_comp = dy.parameter(self.pW_comp)
b_comp = dy.parameter(self.pb_comp)
W_s2h = dy.parameter(self.pW_s2h)
b_s2h = dy.parameter(self.pb_s2h)
W_act = dy.parameter(self.pW_act)
b_act = dy.parameter(self.pb_act)
losses = []
for tok in toks:
tok_embedding = self.WORDS_LOOKUP[tok]
cur = cur.add_input(tok_embedding)
buffer.append((cur.output(), tok_embedding, self.vocab.i2w[tok]))
while not (len(stack) == 1 and len(buffer) == 0):
# based on parser state, get valid actions
valid_actions = []
if len(buffer) > 0: # can only reduce if elements in buffer
valid_actions += [SHIFT]
if len(stack) >= 2: # can only shift if 2 elements on stack
valid_actions += [REDUCE_L, REDUCE_R]
# compute probability of each of the actions and choose an action
# either from the oracle or if there is no oracle, based on the model
action = valid_actions[0]
log_probs = None
if len(valid_actions) > 1:
buffer_embedding = buffer[-1][0] if buffer else empty_buffer_emb
stack_embedding = stack[-1][0].output(
) # the stack has something here
parser_state = dy.concatenate(
[buffer_embedding, stack_embedding])
h = dy.tanh(W_s2h * parser_state + b_s2h)
logits = W_act * h + b_act
log_probs = dy.log_softmax(logits, valid_actions)
if oracle_actions is None:
action = max(enumerate(log_probs.vec_value()),
key=itemgetter(1))[0]
if oracle_actions is not None:
action = oracle_actions.pop()
if log_probs is not None:
# append the action-specific loss
losses.append(dy.pick(log_probs, action))
# execute the action to update the parser state
if action == SHIFT:
_, tok_embedding, token = buffer.pop()
stack_state, _ = stack[-1] if stack else (stack_top, '<TOP>')
stack_state = stack_state.add_input(tok_embedding)
stack.append((stack_state, token))
else: # one of the reduce actions
right = stack.pop()
left = stack.pop()
head, modifier = (left,
right) if action == REDUCE_R else (right,
left)
top_stack_state, _ = stack[-1] if stack else (stack_top,
'<TOP>')
head_rep, head_tok = head[0].output(), head[1]
mod_rep, mod_tok = modifier[0].output(), modifier[1]
composed_rep = dy.rectify(W_comp *
dy.concatenate([head_rep, mod_rep]) +
b_comp)
top_stack_state = top_stack_state.add_input(composed_rep)
stack.append((top_stack_state, head_tok))
if oracle_actions is None:
print('{0} --> {1}'.format(head_tok, mod_tok))
# the head of the tree that remains at the top of the stack is now the root
if oracle_actions is None:
head = stack.pop()[1]
print('ROOT --> {0}'.format(head))
return -dy.esum(losses) if losses else None
history = lambda x, y: open(os.path.join(config.save_dir, 'valid_history'),
'a').write('%.2f %.2f\n' % (x, y))
while global_step < config.train_iters:
print time.strftime(
"%Y-%m-%d %H:%M:%S",
time.localtime()), '\nStart training epoch #%d' % (epoch, )
epoch += 1
lamb = (global_step * 1.0) / config.train_iters
for words, tags, arcs, rels, domain_flag in data:
num = int(words.shape[1] / 2)
words_ = [words[:, :num], words[:, num:]]
tags_ = [tags[:, :num], tags[:, num:]]
arcs_ = [arcs[:, :num], arcs[:, num:]]
rels_ = [rels[:, :num], rels[:, num:]]
for step in xrange(2):
dy.renew_cg()
common_top_recur, private_top_recur, p_fs, p_bs = parser.run_lstm(
words_[step], tags_[step])
if domain_flag == 0:
arc_accuracy, rel_accuracy, overall_accuracy, parser_loss = parser.run_parser(
words_[step],
common_top_recur,
private_top_recur,
arc_targets=arcs_[step],
rel_targets=rels_[step])
parser_loss = parser_loss * 0.5
parser_loss.backward()
class_loss, class_accurate = parser.run_classifier(
common_top_recur, words_[step], domain_flag)
class_loss = lamb * class_loss * 0.5
class_loss.backward()
def predict(self, word_indices, char_indices, train=False):
"""
predict tags for a sentence represented as char+word embeddings
"""
dynet.renew_cg() # new graph
char_emb = []
rev_char_emb = []
wfeatures = [self.wembeds[w] for w in word_indices]
if self.c_in_dim > 0:
# get representation for words
for chars_of_token in char_indices:
# use last state as word representation
last_state = self.char_rnn.predict_sequence(
[self.cembeds[c] for c in chars_of_token])[-1]
rev_last_state = self.char_rnn.predict_sequence(
[self.cembeds[c] for c in reversed(chars_of_token)])[-1]
char_emb.append(last_state)
rev_char_emb.append(rev_last_state)
features = [
dynet.concatenate([w, c, rev_c]) for w, c, rev_c in zip(
wfeatures, char_emb, reversed(rev_char_emb))
]
else:
features = wfeatures
if train: # only do at training time
features = [dynet.noise(fe, self.noise_sigma) for fe in features]
output_expected_at_layer = self.h_layers
output_expected_at_layer -= 1
# go through layers
# input is now combination of w + char emb
prev = features
prev_rev = features
num_layers = self.h_layers
for i in range(0, num_layers):
predictor = self.predictors["inner"][i]
forward_sequence, backward_sequence = predictor.predict_sequence(
prev, prev_rev)
if i > 0 and self.activation:
# activation between LSTM layers
forward_sequence = [
self.activation(s) for s in forward_sequence
]
backward_sequence = [
self.activation(s) for s in backward_sequence
]
if i == output_expected_at_layer:
output_predictor = self.predictors["output_layers_dict"]
concat_layer = [
dynet.concatenate([f, b]) for f, b in zip(
forward_sequence, reversed(backward_sequence))
]
if train and self.noise_sigma > 0.0:
concat_layer = [
dynet.noise(fe, self.noise_sigma)
for fe in concat_layer
]
output = output_predictor.predict_sequence(concat_layer)
return output
prev = forward_sequence
prev_rev = backward_sequence
raise Exception("oops should not be here")
return None
def train(corpus, bigrams_dims, unigrams_dims, lstm_units, hidden_units,
epochs, batch_size, train_data_file, dev_data_file,
model_save_file, droprate, unk_params, alpha, beta):
start_time = time.time()
fm = corpus
bigrams_size = corpus.total_bigrams()
unigrams_size = corpus.total_unigrams()
network = Network(
bigrams_size=bigrams_size,
unigrams_size=unigrams_size,
bigrams_dims=bigrams_dims,
unigrams_dims=unigrams_dims,
lstm_units=lstm_units,
hidden_units=hidden_units,
label_size=fm.total_labels(),
span_nums=fm.total_span_nums(),
droprate=droprate,
)
network.init_params()
print('Hidden units : {} ,per LSTM units : {}'.format(
hidden_units,
lstm_units,
))
print('Embeddings: bigrams = {}, unigrams = {}'.format(
(bigrams_size, bigrams_dims), (unigrams_size, unigrams_dims)))
print('Dropout rate : {}'.format(droprate))
print('Parameters initialized in [-0.01,0.01]')
print('Random UNKing parameter z = {}'.format(unk_params))
training_data = corpus.gold_data_from_file(train_data_file)
num_batched = -(-len(training_data) // batch_size)
print('Loaded {} training sentences ({} batches of size {})!'.format(
len(training_data),
num_batched,
batch_size,
))
parse_every = -(-num_batched // 4)
dev_sentences = SegSentence.load_sentence_file(dev_data_file)
print('Loaded {} validation sentences!'.format(len(dev_sentences)))
best_acc = FScore()
for epoch in xrange(1, epochs + 1):
print('............ epoch {} ............'.format(epoch))
total_cost = 0.0
total_states = 0
training_acc = FScore()
np.random.shuffle(training_data)
for b in xrange(num_batched):
batch = training_data[(b * batch_size):(b + 1) * batch_size]
explore = [
Segmenter.exploration(example,
fm,
network,
alpha=alpha,
beta=beta) for example in batch
]
for (_, acc) in explore:
training_acc += acc
batch = [example for (example, _) in explore]
dynet.renew_cg()
network.prep_params()
errors = []
for example in batch:
## random UNKing ##
for (i, uni) in enumerate(example['unigrams']):
if uni <= 2:
continue
u_freq = fm.unigrams_freq_list[uni]
drop_prob = unk_params / (unk_params + u_freq)
r = np.random.random()
if r < drop_prob:
example['unigrams'][i] = 0
for (i, bi) in enumerate(example['fwd_bigrams']):
if bi <= 2:
continue
b_freq = fm.bigrams_freq_list[bi]
drop_prob = unk_params / (unk_params + b_freq)
r = np.random.random()
if r < drop_prob:
example['fwd_bigrams'][i] = 0
fwd, back = network.evaluate_recurrent(
example['fwd_bigrams'],
example['unigrams'],
)
for (left,
right), correct in example['label_data'].items():
# correct = example['label_data'][(left,right)]
scores = network.evaluate_labels(
fwd, back, left, right)
probs = dynet.softmax(scores)
loss = -dynet.log(dynet.pick(probs, correct))
errors.append(loss)
total_states += len(example['label_data'])
batch_error = dynet.esum(errors)
total_cost += batch_error.scalar_value()
batch_error.backward()
network.trainer.update()
mean_cost = total_cost / total_states
print(
'\rBatch {} Mean Cost {:.4f} [Train: {}]'.format(
b,
mean_cost,
training_acc,
),
end='',
)
sys.stdout.flush()
if ((b + 1) % parse_every) == 0 or b == (num_batched - 1):
dev_acc = Segmenter.evaluate_corpus(
dev_sentences,
fm,
network,
)
print(' [Val: {}]'.format(dev_acc))
if dev_acc.fscore() > best_acc.fscore():
best_acc = dev_acc
network.save(model_save_file)
print(' [saved model : {}]'.format(model_save_file))
current_time = time.time()
runmins = (current_time - start_time) / 60
print(' Elapsed time: {:.2f}m'.format(runmins))
return network
def CalculateLossForDaf(daf, fValidation=False):
dy.renew_cg()
tagged_daf = {"words": [], "file": daf["file"]}
daf = daf["words"]
# add a bos before and after
seq = ['*BOS*'] + list(' '.join([word for word, _, _ in daf])) + ['*BOS*']
# get all the char encodings for the daf
char_embeds = [let_enc(let) for let in seq]
# run it through the bilstm
char_bilstm_outputs = bilstm(char_embeds)
# now iterate and get all the separate word representations by concatenating the bilstm output
# before and after the word
word_bilstm_outputs = []
iLet_start = 0
for iLet, char in enumerate(seq):
# if it is a bos, check if it's at the end of the sequence
if char == '*BOS*':
if iLet + 1 == len(seq): char = ' '
else: continue
# if we are at a space, take this bilstm output and the one at the letter start
if char == ' ':
cur_word_bilstm_output = dy.concatenate(
[char_bilstm_outputs[iLet_start], char_bilstm_outputs[iLet]])
# add it in
word_bilstm_outputs.append(cur_word_bilstm_output)
# set the iLet_start ocunter to here
iLet_start = iLet
# safe-check, make sure word bilstm outputs length is the same as the daf
if len(word_bilstm_outputs) != len(daf):
log_message('Size mismatch!! word_bilstm_outputs: ' +
str(len(word_bilstm_outputs)) + ', daf: ' + str(len(daf)))
prev_pos_lstm_state = prev_pos_lstm.initial_state().add_input(
pos_enc('*BOS*'))
all_losses = []
pos_prec = 0.0
pos_items = 0
# now iterate through the bilstm outputs, and each word in the daf
for (word, gold_word_class,
gold_word_pos), bilstm_output in zip(daf, word_bilstm_outputs):
should_backprop = gold_word_class == 1
# create the mlp input, a concatenate of the bilstm output and of the prev pos output
mlp_input = dy.concatenate(
[bilstm_output, prev_pos_lstm_state.output()])
# run through the class mlp
pos_mlp_output = pos_mlp(mlp_input)
try:
temp_pos_array = pos_mlp_output.npvalue()
possible_pos_array = np.zeros(temp_pos_array.shape)
pos_list = pos_hashtable[word]
#pos_list.add('') #concat 'unknown' as possible pos
possible_pos_indices = [
pos_vocab[temp_pos] for temp_pos in pos_list
]
possible_pos_array[possible_pos_indices] = temp_pos_array[
possible_pos_indices]
except KeyError:
possible_pos_array = pos_mlp_output.npvalue()
#if fValidation:
# possible_pos_array[pos_vocab['']] = 0.0 # don't allow validation to guess UNK b/c it never trained against that TODO this makes sense, right?
predicted_word_pos = pos_vocab.getItem(np.argmax(possible_pos_array))
confidence = np.max(possible_pos_array) / np.sum(possible_pos_array)
if should_backprop:
pos_prec += 1 if predicted_word_pos == gold_word_pos else 0
pos_items += 1
# if we aren't doing validation, calculate the loss
if not fValidation:
if should_backprop:
all_losses.append(
-dy.log(dy.pick(pos_mlp_output, pos_vocab[gold_word_pos])))
word_pos_ans = gold_word_pos
# otherwise, set the answer to be the argmax
else:
if should_backprop:
pos_conf_matrix(pos_vocab[predicted_word_pos],
pos_vocab[gold_word_pos])
word_pos_ans = predicted_word_pos
# run through the prev-pos-mlp
prev_pos_lstm_state = prev_pos_lstm_state.add_input(
pos_enc(word_pos_ans))
#prev_pos_lstm_state = prev_pos_lstm_state.add_input(pos_enc(''))
tagged_daf["words"].append({
"word": word,
"gold_pos": gold_word_pos,
"predicted_pos": predicted_word_pos,
"confidence": confidence
})
pos_prec = pos_prec / pos_items if pos_items > 0 else None
#class_prec = class_prec / class_items if class_items > 0 else None
if fValidation:
return pos_prec, tagged_daf
total_loss = dy.esum(all_losses) if len(all_losses) > 0 else None
return total_loss, pos_prec
def propogate(self, sentence):
dy.renew_cg()
fwdRNN_surface_init = self.fwdRNN_surface.initial_state()
bwdRNN_surface_init = self.bwdRNN_surface.initial_state()
if self.stemming:
fwdRNN_root_init = self.fwdRNN_root.initial_state()
bwdRNN_root_init = self.bwdRNN_root.initial_state()
fwdRNN_suffix_init = self.fwdRNN_suffix.initial_state()
bwdRNN_suffix_init = self.bwdRNN_suffix.initial_state()
fwdRNN_context_init = self.fwdRNN_context.initial_state()
bwdRNN_context_init = self.bwdRNN_context.initial_state()
if self.postagging:
W = dy.parameter(self.pW)
b = dy.parameter(self.pb)
# CONTEXT REPRESENTATIONS
surface_words_rep = []
for index, word in enumerate(sentence):
encoded_surface_word = self._encode(word.surface_word,
self.char2id)
surface_word_char_embeddings = self._embed(
encoded_surface_word, self.SURFACE_CHARS_LOOKUP)
fw_exps_surface_word = fwdRNN_surface_init.transduce(
surface_word_char_embeddings)
bw_exps_surface_word = bwdRNN_surface_init.transduce(
reversed(surface_word_char_embeddings))
surface_word_rep = dy.concatenate(
[fw_exps_surface_word[-1], bw_exps_surface_word[-1]])
surface_words_rep.append(surface_word_rep)
fw_exps_context = fwdRNN_context_init.transduce(surface_words_rep)
bw_exps_context = bwdRNN_context_init.transduce(
reversed(surface_words_rep))
root_scores = []
postag_scores = []
# Stem and POS REPRESENTATIONS
for index, word in enumerate(sentence):
if self.stemming:
encoded_roots = [
self._encode(root, self.char2id) for root in word.roots
]
encoded_suffixes = [
self._encode(suffix, self.char2id)
for suffix in word.suffixes
]
roots_embeddings = [
self._embed(root, self.ROOT_CHARS_LOOKUP)
for root in encoded_roots
]
suffix_embeddings = [
self._embed(suffix, self.ROOT_CHARS_LOOKUP)
for suffix in encoded_suffixes
]
root_stem_representations = []
for root_embedding, suffix_embedding in zip(
roots_embeddings, suffix_embeddings):
fw_exps_root = fwdRNN_root_init.transduce(root_embedding)
bw_exps_root = bwdRNN_root_init.transduce(
reversed(root_embedding))
root_representation = dy.rectify(
dy.concatenate([fw_exps_root[-1], bw_exps_root[-1]]))
if len(suffix_embedding) != 0:
fw_exps_suffix = fwdRNN_suffix_init.transduce(
suffix_embedding)
bw_exps_suffix = bwdRNN_suffix_init.transduce(
reversed(suffix_embedding))
suffix_representation = dy.rectify(
dy.concatenate(
[fw_exps_suffix[-1], bw_exps_suffix[-1]]))
root_stem_representations.append(
dy.rectify(
dy.esum([
root_representation, suffix_representation
])))
else:
root_stem_representations.append(root_representation)
left_context_rep = fw_exps_context[index]
right_context_rep = bw_exps_context[len(sentence) - index - 1]
context_rep = dy.tanh(
dy.esum([left_context_rep, right_context_rep]))
if self.stemming and self.postagging:
root_scores.append(
(dy.reshape(context_rep, (1, context_rep.dim()[0][0])) *
dy.concatenate(root_stem_representations, 1))[0])
postag_scores.append(
(dy.reshape(context_rep,
(1, context_rep.dim()[0][0])) * W + b)[0])
elif self.stemming:
root_scores.append(
(dy.reshape(context_rep, (1, context_rep.dim()[0][0])) *
dy.concatenate(root_stem_representations, 1))[0])
elif self.postagging:
postag_scores.append(
(dy.reshape(context_rep,
(1, context_rep.dim()[0][0])) * W + b)[0])
return root_scores, postag_scores
def test_value(self):
dy.renew_cg()
x = dy.inputTensor(self.v1)
self.assertTrue(np.allclose(x.npvalue(), self.v1))
def train(self, train_data, dev_data, num_epochs=120, batch_size=10):
for I in range(num_epochs):
print("EPOCH NUMBER {}".format(I))
avg_loss = 0.
random.shuffle(train_data)
good, bad = 0., 0.
avg_edit_distance = 0.
q = 0.
losses = []
preds = []
for i, (x, y) in enumerate(train_data):
if i % batch_size == 0 and i > 0:
loss_sum = dy.esum(losses)
loss_sum.forward()
loss_sum.backward()
self.trainer.update()
losses = []
# evaluate trainset accuracy
for (word_probs, y_true) in preds:
generated_string = ""
for char_probs in word_probs:
generated_string += self.I2C[np.argmax(
char_probs.npvalue())]
if generated_string == y_true:
good += 1
else:
bad += 1
preds = []
dy.renew_cg()
encoded_state, encoded_x = self.encode(x)
loss, probs = self.decode(encoded_state,
y,
encoded_x,
train=True)
preds.append((probs, y))
losses.append(loss)
if i % 2000 == 0 and i > 0:
print(i)
#print (avg_loss)
avg_loss = 0.
#self.test(dev_data)
#print ('DROPOUT = 0.5')
#self.embedding_collector.collect()
print("training accuracy: {}".format(good / (good + bad)))
acc, edit_dis = self.evaluate(dev_data)
self.accs.append(acc)
patience = 8
if I > 8 and abs(
min(self.accs[-patience:]) -
max(self.accs[-patience:])) < 0.01:
return 0
if acc > self.best_acc:
self.best_acc = acc
self.model.save("model.m." + str(self.id))
#self.embedding_collector.collect()
return 0
def test_pick_batch_elem(self):
dy.renew_cg()
x = dy.lookup_batch(self.p, [0, 1])
y = dy.pick_batch_elem(x, 1)
self.assertTrue(np.allclose(y.npvalue(), self.pval[1]))
def get_perplexity(self, input, output):
dynet.renew_cg()
embedded = self.embed_seq(input)
encoded = self.encode_seq(embedded)
loss = self.decode(encoded, output)
return math.exp(loss.value() / (len(output) - 1))
def test_lookup_batch(self):
dy.renew_cg()
x = dy.lookup_batch(self.p, [0, 1])
self.assertTrue(np.allclose(x.npvalue(), self.pval.T))
def beamDecode(model,
encoder,
revcoder,
decoder,
encoder_params,
decoder_params,
sentence_de,
downstream=False,
k=10):
dy.renew_cg()
encoder_lookup = encoder_params["lookup"]
decoder_lookup = decoder_params["lookup"]
R = dy.parameter(decoder_params["R"])
bias = dy.parameter(decoder_params["bias"])
sentence_de_forward = sentence_de
sentence_de_reverse = sentence_de[::-1]
s = encoder.initial_state()
inputs = [dy.lookup(encoder_lookup, de) for de in sentence_de_forward]
states = s.add_inputs(inputs)
encoder_outputs = [s.output() for s in states]
s_reverse = revcoder.initial_state()
inputs = [dy.lookup(encoder_lookup, de) for de in sentence_de_reverse]
states_reverse = s_reverse.add_inputs(inputs)
revcoder_outputs = [s.output() for s in states_reverse]
final_coding_output = encoder_outputs[-1] + revcoder_outputs[-1]
final_state = states[-1].s()
final_state_reverse = states_reverse[-1].s()
final_coding_state = ((final_state_reverse[0] + final_state[0]),
(final_state_reverse[1] + final_state[1]))
final_combined_outputs = [
revcoder_output + encoder_output for revcoder_output, encoder_output in
zip(revcoder_outputs[::-1], encoder_outputs)
]
s_init = decoder.initial_state().set_s(final_state_reverse)
o_init = s_init.output()
alpha_init = dy.softmax(
dy.concatenate([
dy.dot_product(o_init, final_combined_output)
for final_combined_output in final_combined_outputs
]))
c_init = attend_vector(final_combined_outputs, alpha_init)
s_0 = s_init
o_0 = o_init
alpha_0 = alpha_init
c_0 = c_init
finishedSequences = []
currentSequences = [
(s_0, c_0, o_0, [], 0.0),
]
#print "Beam Search Start"
while len(finishedSequences) < 2 * k:
candidates = []
for currentSequence in currentSequences:
scores = None
if downstream:
scores = dy.affine_transform([
bias, R,
dy.concatenate([currentSequence[2], currentSequence[1]])
])
else:
scores = dy.affine_transform([bias, R, currentSequence[2]])
topkTokens = topk(scores.npvalue(), k)
for topkToken in topkTokens:
loss = (dy.pickneglogsoftmax(scores, topkToken)).value()
candidate_i_t = dy.concatenate(
[dy.lookup(decoder_lookup, topkToken), currentSequence[1]])
candidate_s_t = currentSequence[0].add_input(candidate_i_t)
candidate_o_t = candidate_s_t.output()
candidate_alpha_t = dy.softmax(
dy.concatenate([
dy.dot_product(candidate_o_t, final_combined_output)
for final_combined_output in final_combined_outputs
]))
candidate_c_t = attend_vector(final_combined_outputs,
candidate_alpha_t)
candidate_loss = currentSequence[4] + loss
candidate_sequence = copy.deepcopy(currentSequence[3])
candidate_sequence.append(topkToken)
candidate = (candidate_s_t, candidate_c_t, candidate_o_t,
candidate_sequence, candidate_loss)
if topkToken == STOP or len(
candidate_sequence) > len(sentence_de) + 10:
if len(candidate_sequence) > 3 or len(
candidate_sequence) >= len(sentence_de):
finishedSequences.append(candidate)
else:
candidates.append(candidate)
#Sort candidates by loss, lesser loss is better
candidates.sort(key=lambda x: x[4])
currentSequences = candidates[:k]
#print "Beam Search End"
finishedSequences.sort(key=lambda x: x[4])
sentence_en = finishedSequences[0][3]
return loss, sentence_en
def total_loss(model, data):
losses = []
for instance in tqdm(data, desc='Computing loss'):
losses.append(nll(model, instance).value())
dy.renew_cg()
return sum(losses)
def step_batch(self, batch):
dy.renew_cg()
W_y = dy.parameter(self.W_y)
b_y = dy.parameter(self.b_y)
W1_att_e = dy.parameter(self.W1_att_e)
W1_att_f = dy.parameter(self.W1_att_f)
w2_att = dy.parameter(self.w2_att)
W1_att_lang = dy.parameter(self.W1_att_lang)
M_s = self.src_lookup
M_t = self.tgt_lookup
src_sent, tgt_sent = zip(*batch)
src_sent = zip(*src_sent)
tgt_sent = zip(*tgt_sent)
src_sent_rev = list(reversed(src_sent))
# Bidirectional representations
l2r_state = self.l2r_builder.initial_state()
r2l_state = self.r2l_builder.initial_state()
l2r_contexts = []
r2l_contexts = []
for (cw_l2r, cw_r2l) in zip(src_sent, src_sent_rev):
l2r_state = l2r_state.add_input(dy.lookup_batch(M_s, cw_l2r))
r2l_state = r2l_state.add_input(dy.lookup_batch(M_s, cw_r2l))
l2r_contexts.append(
l2r_state.output()) # [<S>, x_1, x_2, ..., </S>]
r2l_contexts.append(
r2l_state.output()) # [</S> x_n, x_{n-1}, ... <S>]
# encoded_h1 = l2r_state.output()
# tem1 = encoded_h1.npvalue()
r2l_contexts.reverse() # [<S>, x_1, x_2, ..., </S>]
# Combine the left and right representations for every word
h_fs = []
for (l2r_i, r2l_i) in zip(l2r_contexts, r2l_contexts):
h_fs.append(dy.concatenate([l2r_i, r2l_i]))
encoded_h = h_fs[-1]
h_fs_matrix = dy.concatenate_cols(h_fs)
# h_fs_matrix_t = dy.transpose(h_fs_matrix)
losses = []
num_words = 0
# Decoder
c_t = dy.vecInput(self.hidden_size * 2)
c_t.set([0 for i in xrange(self.contextsize)])
encoded_h = dy.concatenate([encoded_h])
dec_state = self.dec_builder.initial_state([encoded_h])
langeb = dy.lookup_batch(self.langeb_lookup, [
self.lang_li.index(self.rsrc_vocab[item]) for item in src_sent[1]
])
for (cw, nw) in zip(tgt_sent[0:-1], tgt_sent[1:]):
embed = dy.lookup_batch(M_t, cw)
dec_state = dec_state.add_input(dy.concatenate([embed, c_t]))
h_e = dec_state.output()
#calculate attention
'''
a_t = h_fs_matrix_t * h_e
alignment = dy.softmax(a_t)
c_t = h_fs_matrix * alignment'''
c_t = self.__attention_mlp_batch(h_fs_matrix, h_e, W1_att_e,
W1_att_f, w2_att, W1_att_lang,
langeb)
ind_tem = dy.concatenate([h_e, c_t])
ind_tem1 = W_y * ind_tem
ind_tem2 = ind_tem1 + b_y
loss = dy.pickneglogsoftmax_batch(ind_tem2, nw) # to modify
losses.append(loss)
num_words += 1
return dy.sum_batches(dy.esum(losses)), num_words
def train(model,
train,
dev,
trainer,
epochs,
vec_drop,
batch_size,
logger,
truth_ind=2,
print_every=20000):
"""
training method
:param model: attacker model
:param train: training set
:param dev: development/test set
:param trainer: optimizer
:param epochs: number of epochs
:param vec_drop: representation vector (of the sentence) dropout
:param batch_size: size of batch
:param logger:
:param truth_ind: index of the truth in the train/dev set
:param print_every: print every x examples in each epoch
:return:
"""
train_acc_arr, train_loss_arr = [], []
dev_acc_arr, dev_loss_arr = [], []
best_model_epoch = 1
best_score = 0.0
logger.debug('training started')
for epoch in xrange(1, epochs + 1):
dy.renew_cg()
# train
epoch_pass(train, model, trainer, True, batch_size, vec_drop,
truth_ind, logger, print_every)
train_task_acc, loss = epoch_pass(train, model, trainer, False,
batch_size, vec_drop, truth_ind,
logger, print_every)
train_acc_arr.append(train_task_acc)
train_loss_arr.append(loss)
logger.debug('train, {0}, adv acc: {1}'.format(epoch, train_task_acc))
# dev
dev_task_acc, loss = epoch_pass(dev, model, trainer, False, batch_size,
vec_drop, truth_ind, logger,
print_every)
dev_acc_arr.append(dev_task_acc)
dev_loss_arr.append(loss)
logger.debug('dev, {0}, adv acc: {1}'.format(epoch, dev_task_acc))
log_value('attacker-acc', dev_task_acc, epoch)
if dev_task_acc > best_score:
best_score = dev_task_acc
best_model_epoch = epoch
model.save(models_dir + task + '/best_attacker')
logger.info('best_score:' + str(best_score))
logger.info('best_epoch:' + str(best_model_epoch))
logger.info('train_task_acc:' + str(train_acc_arr))
logger.info('train_loss:' + str(train_loss_arr))
logger.info('dev_task_acc:' + str(dev_acc_arr))
logger.info('dev_loss:' + str(dev_loss_arr))
def generate(self, s_sentence, orig_sent, max_len=150):
dy.renew_cg()
global beam_size
W_y = dy.parameter(self.params["W_y"])
b_y = dy.parameter(self.params["b_y"])
s_lookup = self.params["s_lookup"]
t_lookup = self.params["t_lookup"]
# s_sentence = [self.s_vocab[EOS]] + s_sentence + [self.s_vocab[EOS]]
# orig_sent = [EOS] + orig_sent + [EOS]
s_sentence_rev = list(reversed(s_sentence))
l2r_state = self.l2r_builder.initial_state()
r2l_state = self.r2l_builder.initial_state()
l2r_contexts = []
r2l_contexts = []
for cw_l2r in s_sentence:
l2r_state = l2r_state.add_input(s_lookup[cw_l2r])
l2r_contexts.append(l2r_state.output())
for cw_r2l in s_sentence_rev:
r2l_state = r2l_state.add_input(s_lookup[cw_r2l])
r2l_contexts.append(r2l_state.output())
r2l_contexts.reverse()
H_f = []
H_f = [dy.concatenate(list(p)) for p in zip(l2r_contexts, r2l_contexts)]
H_f_mat = dy.concatenate_cols(H_f)
W1_att = dy.parameter(self.params["W1_att"])
w1dt = W1_att * H_f_mat
c_t_init = dy.vecInput(2*self.HIDDEN_DIM)
# c_t = dy.concatenate([l2r_contexts[-1], r2l_contexts[-1]])
dec_state_init = self.dec_builder.initial_state()
possible_list = {("<EOS>", dec_state_init, c_t_init): 0.0}
for i in range(len(s_sentence)*2):
t_list = {}
count_eos = 0
for (poss, dec_state, c_t), prob in possible_list.iteritems():
spl_poss = poss.split(' ')
if i > 1 and spl_poss[-1] == "<EOS>":
count_eos += 1
t_list[(poss, dec_state, c_t)] = prob
continue
if unk in spl_poss[-1]:
word_to_lookup = unk
else:
word_to_lookup = spl_poss[-1]
embedding = t_lookup[self.t_vocab[word_to_lookup]]
x_t = dy.concatenate([c_t, embedding])
dec_state = dec_state.add_input(x_t)
c_t, a_t = self.attend(H_f_mat, dec_state, w1dt, len(s_sentence), 1)
probs = dy.softmax(W_y*dy.concatenate([c_t, dec_state.output()]) + b_y).vec_value()
inds = self.list_nlargest(probs, beam_size)
if len(a_t) != len(orig_sent):
print len(a_t)
print orig_sent
exit()
for ind in inds:
word_to_add = self.t_id_lookup[ind]
if word_to_add == unk:
max_att_ind = a_t.index(max(a_t))
att_word = orig_sent[max_att_ind]
if att_word == word_to_lookup.replace(unk, ""):
att_word = orig_sent[max_att_ind + 1]
word_to_add = att_word + unk
sent = poss + " " + word_to_add
sent_prob = prob + math.log(probs[ind])
# lp = (5 + len(sent.split()))/(5+1)
# sent_prob = sent_prob/pow(lp, alpha)
t_list[(sent, dec_state, c_t)] = sent_prob
if count_eos == beam_size:
break
possible_list = {}
for tup in self.dict_nlargest(t_list, beam_size*2):
possible_list[tup] = t_list[tup]
final_sent = self.dict_nlargest(possible_list, 1)[0][0]
return " ".join(final_sent.replace("<EOS>", " ").replace(unk, " ").strip().split())
def predict_beamsearch(self, encoder, input_seq):
if len(input_seq) == 0:
return []
dn.renew_cg()
self.readout = dn.parameter(self.params['readout'])
self.bias = dn.parameter(self.params['bias'])
self.w_c = dn.parameter(self.params['w_c'])
self.u_a = dn.parameter(self.params['u_a'])
self.v_a = dn.parameter(self.params['v_a'])
self.w_a = dn.parameter(self.params['w_a'])
alphas_mtx = []
# encode input sequence
blstm_outputs, input_masks = encoder.encode_batch([input_seq])
# complete sequences and their probabilities
final_states = []
# initialize the decoder rnn
s_0 = self.decoder_rnn.initial_state()
# holds beam step index mapped to (sequence, probability, decoder state, attn_vector) tuples
beam = {-1: [([common.BEGIN_SEQ], 1.0, s_0, self.init_lookup[0])]}
i = 0
# expand another step if didn't reach max length and there's still beams to expand
while i < self.max_prediction_len and len(beam[i - 1]) > 0:
# create all expansions from the previous beam:
new_hypos = []
for hypothesis in beam[i - 1]:
prefix_seq, prefix_prob, prefix_decoder, prefix_attn = hypothesis
last_hypo_symbol = prefix_seq[-1]
# cant expand finished sequences
if last_hypo_symbol == common.END_SEQ:
continue
# expand from the last symbol of the hypothesis
try:
prev_output_vec = self.output_lookup[self.y2int[last_hypo_symbol]]
except KeyError:
# not a known symbol
print 'impossible to expand, key error: ' + str(last_hypo_symbol)
continue
decoder_input = dn.concatenate([prev_output_vec, prefix_attn])
s = prefix_decoder.add_input(decoder_input)
decoder_rnn_output = s.output()
# perform attention step
attention_output_vector, alphas = self.attend(blstm_outputs, decoder_rnn_output)
# save attention weights for plotting
# TODO: add attention weights properly to allow building the attention matrix for the best path
if self.plot:
val = alphas.vec_value()
alphas_mtx.append(val)
# compute output probabilities
# h = readout * attention_output_vector + bias
h = dn.affine_transform([self.bias, self.readout, attention_output_vector])
probs = dn.softmax(h)
probs_val = probs.npvalue()
# TODO: maybe should choose nbest from all expansions and not only from nbest of each hypothesis?
# find best candidate outputs
n_best_indices = common.argmax(probs_val, self.beam_size)
for index in n_best_indices:
p = probs_val[index]
new_seq = prefix_seq + [self.int2y[index]]
new_prob = prefix_prob * p
if new_seq[-1] == common.END_SEQ or i == self.max_prediction_len - 1:
# TODO: add to final states only if fits in k best?
# if found a complete sequence or max length - add to final states
final_states.append((new_seq[1:-1], new_prob))
else:
new_hypos.append((new_seq, new_prob, s, attention_output_vector))
# add the most probable expansions from all hypotheses to the beam
new_probs = np.array([p for (s, p, r, a) in new_hypos])
argmax_indices = common.argmax(new_probs, self.beam_size)
beam[i] = [new_hypos[l] for l in argmax_indices]
i += 1
# get nbest results from final states found in search
final_probs = np.array([p for (s, p) in final_states])
argmax_indices = common.argmax(final_probs, self.beam_size)
nbest_seqs = [final_states[l] for l in argmax_indices]
return nbest_seqs, alphas_mtx
def start_batch(self):
self.losses = []
dy.renew_cg()
def train(self, train_file, epochs):
# matplotlib config
loss_values = []
plt.ion()
ax = plt.gca()
ax.set_xlim([0, 10])
ax.set_ylim([0, 3])
plt.title("Loss over time")
plt.xlabel("Minibatch")
plt.ylabel("Loss")
for i in range(epochs):
print('started epoch', (i + 1))
losses = []
train_data = open(train_file, 'r').read().strip().split('\n')
# shuffle the training data.
random.shuffle(train_data)
step = 0
for line in train_data:
fields = line.strip().split()
features, label = fields[:-1], fields[-1]
gold_label = self.vocab.action2id(label)
result = self.build_graph(features)
# getting loss with respect to negative log softmax function and the gold label.
loss = dynet.pickneglogsoftmax(result, gold_label)
# appending to the minibatch losses
losses.append(loss)
step += 1
if len(losses) >= self.properties.minibatch_size:
# now we have enough loss values to get loss for minibatch
minibatch_loss = dynet.esum(losses) / len(losses)
# calling dynet to run forward computation for all minibatch items
minibatch_loss.forward()
# getting float value of the loss for current minibatch
minibatch_loss_value = minibatch_loss.value()
# printing info and plotting
loss_values.append(minibatch_loss_value)
if len(loss_values) % 10 == 0:
ax.set_xlim([0, len(loss_values) + 10])
ax.plot(loss_values)
plt.draw()
plt.pause(0.0001)
progress = round(100 * float(step) / len(train_data),
2)
print('current minibatch loss', minibatch_loss_value,
'progress:', progress, '%')
# calling dynet to run backpropagation
minibatch_loss.backward()
# calling dynet to change parameter values with respect to current backpropagation
self.updater.update()
# empty the loss vector
losses = []
# refresh the memory of dynet
dynet.renew_cg()
# there are still some minibatch items in the memory but they are smaller than the minibatch size
# so we ask dynet to forget them
dynet.renew_cg()
epoch = all_sents = dev_time = all_words = this_words = this_loss = 0
random_training_instance = shuffled_infinite_list(train)
for updates in xrange(1, updates):
if updates % int(500 / FLAGS_batch_size) == 0:
trainer.status()
train_time = time.time() - start - dev_time
all_words += this_words
print("loss=%.4f, words per second=%.4f" %
(this_loss / this_words, all_words / train_time))
this_loss = this_words = 0
if updates % int(10000 / FLAGS_batch_size) == 0:
dev_start = time.time()
dev_loss = dev_words = 0
for i in xrange(0, len(valid), FLAGS_batch_size):
valid_minibatch = valid[i:i + FLAGS_batch_size]
dy.renew_cg() # Clear existing computation graph.
loss_exp, mb_words = lm.minibatch_lm_loss(valid_minibatch)
dev_loss += loss_exp.scalar_value()
dev_words += mb_words
print("nll=%.4f, ppl=%.4f, words=%r, time=%.4f, word_per_sec=%.4f" %
(dev_loss / dev_words, math.exp(dev_loss / dev_words), dev_words,
train_time, all_words / train_time))
# Compute loss for one training minibatch.
minibatch = [
next(random_training_instance) for _ in xrange(FLAGS_batch_size)
]
dy.renew_cg() # Clear existing computation graph.
loss_exp, mb_words = lm.minibatch_lm_loss(minibatch)
this_loss += loss_exp.scalar_value()
this_words += mb_words
def parse_event(self, sentence):
for e in sentence:
e.children = []
self.set_empty_vector()
# assign embedding to each word
features = self.extract_features(sentence)
# initialize sentence parse
state = CustomTransitionSystem(sentence)
# parse sentence
while not state.is_terminal():
op_scores, lbl_scores, tg_scores = self.evaluate_events(
state.stack, state.buffer, features)
# get numpy arrays
op_scores = op_scores.npvalue()
lbl_scores = lbl_scores.npvalue()
tg_scores = tg_scores.npvalue()
# select transition
left_lbl_score, left_lbl = max(
zip(lbl_scores[1::2], self.ev_relations))
right_lbl_score, right_lbl = max(
zip(lbl_scores[2::2], self.ev_relations))
trigger_score, trigger = max(zip(tg_scores[2:], self.i2tg[1:]))
# collect all legal transitions
transitions = []
# if state.is_legal('shift'):
# t = ('shift', None, trigger, op_scores[state.t2i['shift']] + lbl_scores[0] + trigger_score)
# transitions.append(t)
# if state.is_legal('left_arc'):
# t = ('left_arc', left_lbl, None, op_scores[state.t2i['left_arc']] + left_lbl_score + tg_scores[0])
# transitions.append(t)
# if state.is_legal('right_arc'):
# t = ('right_arc', right_lbl, None, op_scores[state.t2i['right_arc']] + right_lbl_score + tg_scores[0])
# transitions.append(t)
# if state.is_legal('drop'):
# t = ('drop', None, "O", op_scores[state.t2i['drop']] + lbl_scores[0] + tg_scores[1])
# transitions.append(t)
# t = ('drop', None, "Protein", op_scores[state.t2i['drop']] + lbl_scores[0] + tg_scores[4])
# transitions.append(t)
# print('LEGAL:', list(state.all_legal()))
for lt in state.all_legal():
ix = state.t2i[lt]
if lt == "shift":
t = (lt, None, trigger, op_scores[state.t2i[lt]] +
lbl_scores[0] + trigger_score)
transitions.append(t)
if lt == "drop":
t = (lt, None, "O", op_scores[state.t2i[lt]] +
lbl_scores[0] + tg_scores[1])
transitions.append(t)
t = (lt, None, "Protein", op_scores[state.t2i[lt]] +
lbl_scores[0] + tg_scores[4])
transitions.append(t)
if lt in ['left_reduce', 'left_attach']:
t = (lt, left_lbl, None, op_scores[state.t2i[lt]] +
left_lbl_score + tg_scores[0])
transitions.append(t)
if lt in ['right_reduce', 'right_attach']:
t = (lt, right_lbl, None, op_scores[state.t2i[lt]] +
right_lbl_score + tg_scores[0])
transitions.append(t)
if lt == "swap":
t = (lt, None, None, op_scores[state.t2i[lt]] +
lbl_scores[0] + tg_scores[0])
transitions.append(t)
# print('STACK:', state.stack)
# print('BUFFER:', state.buffer)
# print('ARCS:', state.arcs)
# select best legal transition
best_act, best_lbl, best_tg, best_socre = max(transitions,
key=itemgetter(3))
# print (best_act)
# print ("----------------------------")
# perform transition
state.perform_transition(best_act, best_lbl, best_tg)
dy.renew_cg()
return sentence