bc = AliquotType(name='Buffy Coat', alpha_code='BC', numeric_code='16')
pl = AliquotType(name='Plasma', alpha_code='PL', numeric_code='32')
wb.add_derivatives(pl, bc)
processing_profile = ProcessingProfile(name='viral_load', aliquot_type=wb)
process_vl_bc = Process(aliquot_type=bc, aliquot_count=2)
process_vl_pl = Process(aliquot_type=pl, aliquot_count=3)
processing_profile.add_processes(process_vl_bc, process_vl_pl)
processing_profile = ProcessingProfile(name='rbd', aliquot_type=wb)
process_rbd_bc = Process(aliquot_type=bc, aliquot_count=2)
process_rbd_pl = Process(aliquot_type=pl, aliquot_count=4)
processing_profile.add_processes(process_rbd_bc, process_rbd_pl)
panel_vl = RequisitionPanel(name=VIRAL_LOAD,
abbreviation='VL',
aliquot_type=wb,
processing_profile=processing_profile)
panel_rbd = RequisitionPanel(name=RESEARCH_BLOOD_DRAW,
aliquot_type=wb,
abbreviation='RBD',
processing_profile=processing_profile)
lab_profile.add_panel(panel_vl)
lab_profile.add_panel(panel_rbd)
site_labs.register(lab_profile,
requisition_model='bcpp_clinic_subject.subjectrequisition')
pl = AliquotType(name='Plasma', alpha_code='PL', numeric_code='36')
bc = AliquotType(name='Buffy Coat', alpha_code='BC', numeric_code='12')
wb = AliquotType(name='Whole Blood', alpha_code='WB', numeric_code='02')
wb.add_derivatives(bc, pl)
viral_load_processing = ProcessingProfile(name='viral_load', aliquot_type=wb)
vl_pl_process = Process(aliquot_type=pl, aliquot_count=3)
vl_bc_process = Process(aliquot_type=bc, aliquot_count=2)
viral_load_processing.add_processes(vl_pl_process, vl_bc_process)
viral_load_panel = RequisitionPanel(name=VIRAL_LOAD,
abbreviation='VL',
aliquot_type=wb,
processing_profile=viral_load_processing)
lab_profile.add_panel(viral_load_panel)
microtube_processing = ProcessingProfile(name='microtube', aliquot_type=wb)
microtube_pl_process = Process(aliquot_type=pl, aliquot_count=1)
microtube_bc_process = Process(aliquot_type=bc, aliquot_count=1)
microtube_processing.add_processes(microtube_pl_process, microtube_bc_process)
microtube_panel = RequisitionPanel(name=MICROTUBE,
abbreviation='MAP',
aliquot_type=wb,
processing_profile=microtube_processing)
lab_profile.add_panel(microtube_panel)
elisa_processing = ProcessingProfile(name='elisa', aliquot_type=wb)
from edc_lab import RequisitionPanel
from .processing_profiles import (
fbc_processing,
hba1c_processing,
chemistry_processing,
blood_glucose_processing,
poc_processing,
)
hba1c_panel = RequisitionPanel(
name="hba1c",
verbose_name="HbA1c (Venous)",
processing_profile=hba1c_processing,
abbreviation="HBA1C",
)
hba1c_poc_panel = RequisitionPanel(
name="hba1c_poc",
verbose_name="HbA1c (POC)",
abbreviation="HBA1C_POC",
processing_profile=poc_processing,
)
fbc_panel = RequisitionPanel(
name="fbc", verbose_name="Full Blood Count", processing_profile=fbc_processing
)
from .aliquot_types import wb
from .processing_profiles import dbs_processing, infant_insulin, dna_pcr
from .processing_profiles import infant_glucose_processing, elisa_processing
from .processing_profiles import infant_pbmc_pl_processing
from .processing_profiles import infant_serum_processing, infant_pbmc_plasma_processing
from .processing_profiles import infant_wholeblood_processing, infant_paxgene_processing
from .processing_profiles import karabo_pbmc_pl_processing, karabo_wb_pbmc_pl_processing
infant_lab_profile = LabProfile(
name='td_infant_lab_profile',
requisition_model='td_infant.infantrequisition')
infant_glucose_panel = RequisitionPanel(
name='infant_glucose',
verbose_name='Infant Glucose',
aliquot_type=wb,
processing_profile=infant_glucose_processing)
infant_insulin = RequisitionPanel(name='infant_insulin',
verbose_name='Infant Insulin',
aliquot_type=wb,
processing_profile=infant_insulin)
dna_pcr = RequisitionPanel(name='dna_pcr',
verbose_name='DNA PCR',
aliquot_type=wb,
processing_profile=dna_pcr)
serum_panel = RequisitionPanel(name='serum_storage',
verbose_name='Infant Serum (Store Only)',
from edc_lab import RequisitionPanel, LabProfile
from edc_lab.site_labs import site_labs
from .aliquot_types import wb
from .processing_profiles import cbc_processing
from .processing_profiles import viral_load_processing, cd4_processing, hematology_processing
caregiver_lab_profile = LabProfile(
name='flourish_caregiver_lab_profile',
requisition_model='flourish_caregiver.caregiverrequisition')
viral_load_panel = RequisitionPanel(name='viral_load',
verbose_name='Viral Load',
aliquot_type=wb,
processing_profile=viral_load_processing)
cd4_panel = RequisitionPanel(name='cd4',
verbose_name='CD4',
aliquot_type=wb,
processing_profile=cd4_processing)
hematology_panel = RequisitionPanel(name='hematology',
verbose_name='Hematology',
aliquot_type=wb,
processing_profile=hematology_processing)
cbc_panel = RequisitionPanel(name='complete_blood_count',
verbose_name='Complete Blood Count',
aliquot_type=wb,
processing_profile=cbc_processing)
fbc_processing,
plasma_buffycoat_processing,
plasma_processing,
qpcr_blood_processing,
qpcr_csf_processing_profile,
serum_processing,
suptum_processing_profile,
urine_processing_profile,
viral_load_processing,
wb_paxgene_processing_profile,
whole_blood_processing,
)
wb_panel = RequisitionPanel(
name="wb_storage",
verbose_name="Whole Blood Storage",
processing_profile=whole_blood_processing,
)
csf_pkpd_panel = RequisitionPanel( # TODO: Only for Blantyre
name="csf_pk_pd",
verbose_name="CSF PK/PD",
processing_profile=csf_pkpd_processing_profile,
)
qpcr_csf_panel = RequisitionPanel(
name="qpcr_csf",
verbose_name="qPCR CSF",
processing_profile=qpcr_csf_processing_profile,
)
from edc_lab import AliquotType, LabProfile, ProcessingProfile, RequisitionPanel
wb = AliquotType(name="Whole Blood", alpha_code="WB", numeric_code="02")
fbc_processing = ProcessingProfile(name="FBC", aliquot_type=wb)
panel_one = RequisitionPanel(name="one", verbose_name="One", processing_profile=fbc_processing)
panel_two = RequisitionPanel(name="two", verbose_name="Two", processing_profile=fbc_processing)
lab_profile = LabProfile(
name="lab_profile", requisition_model="review_dashboard_app.subjectrequisition"
)
lab_profile.add_panel(panel_one)
lab_profile.add_panel(panel_two)
from edc_lab import RequisitionPanel, LabProfile
from edc_lab.site_labs import site_labs
from .aliquot_types import wb
from .processing_profiles import cd4_processing, insulin
from .processing_profiles import glucose_processing, elisa_processing
from .processing_profiles import pbmc_plasma_processing
from .processing_profiles import viral_load_processing, pbmc_vl_processing
maternal_lab_profile = LabProfile(
name='td_maternal_lab_profile',
requisition_model='td_maternal.maternalrequisition')
cd4_panel = RequisitionPanel(
name='cd4',
verbose_name='CD4',
aliquot_type=wb,
processing_profile=cd4_processing)
viral_load_panel = RequisitionPanel(
name='viral_load',
verbose_name='Viral Load',
aliquot_type=wb,
processing_profile=viral_load_processing)
pbmc_vl_panel = RequisitionPanel(
name='pbmc_vl',
verbose_name='PBMC VL',
aliquot_type=wb,
processing_profile=pbmc_vl_processing)
from edc_lab import RequisitionPanel
from edc_lab_panel.processing_profiles import lipids_processing
lipids_panel = RequisitionPanel(
name="chemistry",
verbose_name="Chemistry: Lipids",
abbreviation="LIPIDS",
processing_profile=lipids_processing,
utest_ids=["ldl", "hdl", "trig", "chol"],
reference_range_collection_name="mocca",
)
from edc_lab import RequisitionPanel, LabProfile
from edc_lab.site_labs import site_labs
from .aliquot_types import dna_pcr, ss, wb
from .processing_profiles import dna_pcr_processing, stool_sample_processing
from .processing_profiles import infant_plasma_cykotines_processing
child_lab_profile = LabProfile(
name='flourish_child_lab_profile',
requisition_model='flourish_child.childrequisition')
dna_pcr_panel = RequisitionPanel(name='dna_pcr',
verbose_name='DNA PCR',
aliquot_type=dna_pcr,
processing_profile=dna_pcr_processing)
stool_sample_panel = RequisitionPanel(
name='stool_sample',
verbose_name='Stool Sample',
aliquot_type=ss,
processing_profile=stool_sample_processing)
infant_pl_cytokines_panel = RequisitionPanel(
name='infant_pl_cytokines',
verbose_name='Plasma Cytokines',
aliquot_type=wb,
processing_profile=infant_plasma_cykotines_processing)
child_lab_profile.add_panel(dna_pcr_panel)
child_lab_profile.add_panel(stool_sample_panel)
child_lab_profile.add_panel(infant_pl_cytokines_panel)