def register_new_visit_schedule(crfs):
site_visit_schedules._registry = {}
site_visit_schedules.loaded = False
visit = Visit(
code="1000",
title="Week 1",
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
crfs=crfs,
allow_unscheduled=True,
facility_name="5-day-clinic",
)
schedule = Schedule(
name="schedule",
onschedule_model="edc_metadata.onschedule",
offschedule_model="edc_metadata.offschedule",
consent_model="edc_metadata.subjectconsent",
appointment_model="edc_appointment.appointment",
)
schedule.add_visit(visit)
new_visit_schedule = VisitSchedule(
name="visit_schedule",
offstudy_model="edc_metadata.subjectoffstudy",
death_report_model="edc_metadata.deathreport",
)
new_visit_schedule.add_schedule(schedule)
site_visit_schedules.register(new_visit_schedule)
def setUp(self):
load_list_data(
list_data=list_data,
model_name="edc_visit_tracking.subjectvisitmissedreasons",
)
self.subject_identifier = "12345"
self.helper = self.helper_cls(
subject_identifier=self.subject_identifier)
crfs = FormsCollection(
Crf(show_order=1, model="edc_metadata.crfone", required=True),
Crf(show_order=2, model="edc_metadata.crftwo", required=True),
Crf(show_order=3, model="edc_metadata.crfthree", required=True),
Crf(show_order=4, model="edc_metadata.crffour", required=True),
Crf(show_order=5, model="edc_metadata.crffive", required=True),
)
crfs_missed = FormsCollection(
Crf(
show_order=1,
model="edc_visit_tracking.subjectvisitmissed",
required=True,
), )
visit_schedule1 = VisitSchedule(
name="visit_schedule1",
offstudy_model="edc_visit_tracking.subjectoffstudy",
death_report_model="edc_visit_tracking.deathreport",
locator_model="edc_locator.subjectlocator",
)
schedule1 = Schedule(
name="schedule1",
onschedule_model="edc_visit_tracking.onscheduleone",
offschedule_model="edc_visit_tracking.offscheduleone",
consent_model="edc_visit_tracking.subjectconsent",
appointment_model="edc_appointment.appointment",
)
visits = []
for index in range(0, 4):
visits.append(
Visit(
code=f"{index + 1}000",
title=f"Day {index + 1}",
timepoint=index,
rbase=relativedelta(days=index),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
requisitions=[],
crfs=crfs,
crfs_missed=crfs_missed,
allow_unscheduled=True,
))
for visit in visits:
schedule1.add_visit(visit)
visit_schedule1.add_schedule(schedule1)
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule=visit_schedule1)
site_reference_configs.register_from_visit_schedule(visit_models={
"edc_appointment.appointment":
"edc_visit_tracking.subjectvisit"
})
visit1 = Visit(
code="2000",
title="Day 2",
timepoint=1,
rbase=relativedelta(days=1),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
crfs=crfs,
facility_name="default",
)
schedule = Schedule(
name="schedule",
onschedule_model="edc_visit_schedule.onschedule",
offschedule_model="edc_visit_schedule.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="edc_consent.subjectconsent",
)
schedule.add_visit(visit0)
schedule.add_visit(visit1)
visit_schedule = VisitSchedule(
name="visit_schedule",
offstudy_model="edc_offstudy.subjectoffstudy",
death_report_model="edc_adverse_event.deathreport",
)
visit_schedule.add_schedule(schedule)
from edc_visit_schedule import Schedule
from ..caregiver_visits.cohort_b_visits import visit3000
# Enrollment Schedules
b_fu1_schedule_1 = Schedule(
name='b_fu1_schedule1',
sequence='3',
verbose_name='Cohort B(First Child(ren)) Follow Up Schedule',
onschedule_model='flourish_caregiver.onschedulecohortbfu',
offschedule_model='flourish_caregiver.caregiveroffschedule',
consent_model='flourish_caregiver.subjectconsent',
appointment_model='edc_appointment.appointment')
b_fu1_schedule_1.add_visit(visit=visit3000)
b_fu2_schedule_1 = Schedule(
name='b_fu2_schedule1',
sequence='3',
verbose_name='Cohort B(Second Child(ren)) Follow Up Schedule',
onschedule_model='flourish_caregiver.onschedulecohortbfu',
offschedule_model='flourish_caregiver.caregiveroffschedule',
consent_model='flourish_caregiver.subjectconsent',
appointment_model='edc_appointment.appointment')
b_fu2_schedule_1.add_visit(visit=visit3000)
b_fu3_schedule_1 = Schedule(
name='b_fu3_schedule1',
sequence='3',
verbose_name='Cohort B(Third Child(ren)) Follow Up Schedule',
visit2 = Visit(
code="3000",
title="Day 3",
timepoint=2,
rbase=relativedelta(days=2),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
requisitions=requisitions2,
crfs=crfs2,
facility_name="default",
)
schedule = Schedule(
name="schedule",
onschedule_model=f"{app_label}.onschedule",
offschedule_model=f"{app_label}.offschedule",
consent_model=f"{app_label}.subjectconsent",
appointment_model="edc_appointment.appointment",
)
schedule.add_visit(visit0)
schedule.add_visit(visit1)
schedule.add_visit(visit2)
visit_schedule = VisitSchedule(
name="visit_schedule",
offstudy_model=f"{app_label}.subjectoffstudy",
death_report_model=f"{app_label}.deathreport",
)
visit_schedule.add_schedule(schedule)
**kwargs):
super().__init__(allow_unscheduled=True
if allow_unscheduled is None else allow_unscheduled,
crfs_unscheduled=crfs_unscheduled
or maternal_crfs_unscheduled,
requisitions_unscheduled=requisitions_unscheduled,
crfs_prn=crfs_prn,
requisitions_prn=requisitions_prn,
**kwargs)
# TODO: Lab Requisitions for visits.
antenatal_schedule_3 = Schedule(
name='antenatal_schedule_3',
verbose_name='Antenatal Visits V3',
onschedule_model='td_maternal.onscheduleantenatalenrollment',
offschedule_model='td_maternal.maternaloffschedule',
consent_model='td_maternal.subjectconsent',
appointment_model='edc_appointment.appointment')
visit1000 = Visit(code='1000M',
title='Antenatal Enrollment V3',
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=0),
requisitions=None,
crfs=crf_1000,
facility_name='5-day clinic')
antenatal_schedule_3.add_visit(visit=visit1000)
from edc_visit_schedule import Schedule
from ..caregiver_visits.cohort_b_visits import visit2000
from .quarterly_schedules import b_quarterly1_schedule_1
# Secondary Aims Schedules
b_sec1_schedule_1 = Schedule(
name='b_sec1_schedule1',
sequence='1',
verbose_name='Cohort B(First Child(ren)) Secondary Aims Schedule',
onschedule_model='flourish_caregiver.onschedulecohortbsec',
offschedule_model='flourish_caregiver.caregiveroffschedule',
consent_model='flourish_caregiver.subjectconsent',
appointment_model='edc_appointment.appointment')
b_sec2_schedule_1 = Schedule(
name='b_sec2_schedule1',
sequence='1',
verbose_name='Cohort B(Second Child(ren)) Secondary Aims Schedule',
onschedule_model='flourish_caregiver.onschedulecohortbsec',
offschedule_model='flourish_caregiver.caregiveroffschedule',
consent_model='flourish_caregiver.subjectconsent',
appointment_model='edc_appointment.appointment')
b_sec3_schedule_1 = Schedule(
name='b_sec3_schedule1',
sequence='1',
verbose_name='Cohort B(Third Child(ren)) Secondary Aims Schedule',
onschedule_model='flourish_caregiver.onschedulecohortbsec',
offschedule_model='flourish_caregiver.caregiveroffschedule',
consent_model='flourish_caregiver.subjectconsent',
from edc_visit_schedule import Schedule
from ....crfs import crf_2001, caregiver_crfs_prn
from ...schedule_helper import ScheduleHelper
from ..caregiver_visits.cohort_b_visits import visit3001
# Quarterly Schedules
b_fu_quarterly1_schedule_1 = Schedule(
name='b_fu_quarterly1_schedule1',
sequence='4',
verbose_name='Cohort B(First Child(ren)) FU Quarterly Schedule',
onschedule_model='flourish_caregiver.onschedulecohortbfu',
offschedule_model='flourish_caregiver.caregiveroffschedule',
consent_model='flourish_caregiver.subjectconsent',
appointment_model='edc_appointment.appointment')
b_fu_quarterly2_schedule_1 = Schedule(
name='b_fu_quarterly2_schedule1',
sequence='4',
verbose_name='Cohort B(Second Child(ren)) FU Quarterly Schedule',
onschedule_model='flourish_caregiver.onschedulecohortbfu',
offschedule_model='flourish_caregiver.caregiveroffschedule',
consent_model='flourish_caregiver.subjectconsent',
appointment_model='edc_appointment.appointment')
b_fu_quarterly3_schedule_1 = Schedule(
name='b_fu_quarterly3_schedule1',
sequence='4',
verbose_name='Cohort B(Third Child(ren)) FU Quarterly Schedule',
onschedule_model='flourish_caregiver.onschedulecohortbfu',
offschedule_model='flourish_caregiver.caregiveroffschedule',
def get_visit_schedule(i=None):
i = i or 4
crfs = FormsCollection(
Crf(show_order=1, model="edc_metadata.crfone", required=True),
Crf(show_order=2, model="edc_metadata.crftwo", required=True),
Crf(show_order=3, model="edc_metadata.crfthree", required=True),
Crf(show_order=4, model="edc_metadata.crffour", required=True),
Crf(show_order=5, model="edc_metadata.crffive", required=True),
)
requisitions = FormsCollection(
Requisition(show_order=10,
panel=Panel("one"),
required=True,
additional=False),
Requisition(show_order=20,
panel=Panel("two"),
required=True,
additional=False),
Requisition(show_order=30,
panel=Panel("three"),
required=True,
additional=False),
Requisition(show_order=40,
panel=Panel("four"),
required=True,
additional=False),
Requisition(show_order=50,
panel=Panel("five"),
required=True,
additional=False),
Requisition(show_order=60,
panel=Panel("six"),
required=True,
additional=False),
)
visit_schedule = VisitSchedule(
name="visit_schedule",
offstudy_model="edc_offstudy.subjectoffstudy",
death_report_model="edc_visit_tracking.deathreport",
locator_model="edc_locator.subjectlocator",
)
schedule = Schedule(
name="schedule",
onschedule_model="edc_visit_tracking.onscheduleone",
offschedule_model="edc_visit_tracking.offscheduleone",
consent_model="edc_visit_tracking.subjectconsent",
appointment_model="edc_appointment.appointment",
)
visits = []
for index in range(0, i):
visits.append(
Visit(
code=f"{index + 1}000",
title=f"Day {index + 1}",
timepoint=index,
rbase=relativedelta(days=index),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
requisitions=requisitions,
crfs=crfs,
facility_name="default",
allow_unscheduled=True,
))
for visit in visits:
schedule.add_visit(visit)
visit_schedule.add_schedule(schedule)
return visit_schedule
from dateutil.relativedelta import relativedelta
from edc_visit_schedule import Schedule, Visit
from .requisitions import requisitions
from .crfs import crfs
schedule1 = Schedule(
name='schedule1',
title='Bcpp Clinic',
enrollment_model='bcpp_clinic_subject.enrollment',
disenrollment_model='bcpp_clinic_subject.disenrollment',)
visit0 = Visit(
code='C0',
title='Clinic Subject Survey',
timepoint=0,
rbase=relativedelta(years=0),
rlower=relativedelta(years=0),
rupper=relativedelta(years=6),
requisitions=requisitions,
crfs=crfs)
schedule1.add_visit(visit=visit0)
allow_unscheduled=True if allow_unscheduled is None else allow_unscheduled,
crfs_unscheduled=crfs_unscheduled or default_crfs_unscheduled,
requisitions_unscheduled=requisitions_unscheduled or default_requisitions,
crfs_prn=crfs_prn or default_crfs_prn,
requisitions_prn=requisitions_prn, # or default_requisitions_prn,
crfs_missed=crfs_missed,
**kwargs,
)
# schedule for new participants
schedule = Schedule(
name=SCHEDULE,
verbose_name="Day 1 to Month 12",
onschedule_model="mocca_prn.onschedule",
offschedule_model="mocca_prn.offschedule",
consent_model="mocca_consent.subjectconsent",
appointment_model="edc_appointment.appointment",
loss_to_followup_model="mocca_prn.losstofollowup",
)
visit00 = Visit(
code=DAY1,
title="Day 1",
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=0),
requisitions=requisitions_d1,
requisitions_prn=requisitions_prn,
crfs=crfs_d1,
super().__init__(
allow_unscheduled=True
if allow_unscheduled is None else allow_unscheduled,
crfs_unscheduled=crfs_unscheduled, # or default_crfs_unscheduled,
requisitions_unscheduled=requisitions_unscheduled
or default_requisitions,
crfs_prn=crfs_prn, # or default_crfs_prn,
requisitions_prn=requisitions_prn, # or default_requisitions_prn,
**kwargs)
# schedule for new participants
schedule = Schedule(
name="schedule",
verbose_name="History and Follow-up",
onschedule_model="mapitio_prn.onschedule",
offschedule_model="mapitio_prn.endofstudy",
consent_model="mapitio_consent.subjectconsent",
appointment_model="edc_appointment.appointment",
)
visit00 = Visit(
code=DAY1,
title="Day 1",
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=0),
requisitions=requisitions_d1,
crfs=crfs_d1,
facility_name="7-day-clinic",
)
offstudy_model="edc_appointment.subjectoffstudy2",
death_report_model="edc_appointment.deathreport",
locator_model="edc_appointment.subjectlocator",
)
visit_schedule3 = VisitSchedule(
name="visit_schedule3",
offstudy_model="edc_appointment.subjectoffstudy2",
death_report_model="edc_appointment.deathreport",
locator_model="edc_appointment.subjectlocator",
)
schedule1 = Schedule(
name="schedule1",
onschedule_model="edc_appointment.onscheduleone",
offschedule_model="edc_appointment.offscheduleone",
appointment_model="edc_appointment.appointment",
consent_model="edc_appointment.subjectconsent",
)
schedule2 = Schedule(
name="schedule2",
onschedule_model="edc_appointment.onscheduletwo",
offschedule_model="edc_appointment.offscheduletwo",
appointment_model="edc_appointment.appointment",
consent_model="edc_appointment.subjectconsent",
)
schedule3 = Schedule(
name="three_monthly_schedule",
onschedule_model="edc_appointment.onschedulethree",
required=True, additional=False),
)
visit_schedule1 = VisitSchedule(
name='visit_schedule1',
offstudy_model='edc_visit_tracking.subjectoffstudy',
death_report_model='edc_visit_tracking.deathreport')
visit_schedule2 = VisitSchedule(
name='visit_schedule2',
offstudy_model='edc_visit_tracking.subjectoffstudy',
death_report_model='edc_visit_tracking.deathreport')
schedule1 = Schedule(
name='schedule1',
onschedule_model='edc_visit_tracking.onscheduleone',
offschedule_model='edc_visit_tracking.offscheduleone',
consent_model='edc_visit_tracking.subjectconsent',
appointment_model='edc_appointment.appointment')
schedule2 = Schedule(
name='schedule2',
onschedule_model='edc_visit_tracking.onscheduletwo',
offschedule_model='edc_visit_tracking.offscheduletwo',
consent_model='edc_visit_tracking.subjectconsent',
appointment_model='edc_appointment.appointment')
visits = []
for index in range(0, 4):
visits.append(
Visit(
from edc_visit_schedule import Schedule
from ..caregiver_visits.cohort_b_visits import visit2000
# Enrollment Schedules
b_enrollment1_schedule_1 = Schedule(
name='b_enrol1_schedule1',
sequence='1',
verbose_name='Cohort B(First Child(ren)) Enrollment Schedule',
onschedule_model='flourish_caregiver.onschedulecohortbenrollment',
offschedule_model='flourish_caregiver.caregiveroffschedule',
consent_model='flourish_caregiver.subjectconsent',
appointment_model='edc_appointment.appointment')
b_enrollment1_schedule_1.add_visit(visit=visit2000)
b_enrollment2_schedule_1 = Schedule(
name='b_enrol2_schedule1',
sequence='1',
verbose_name='Cohort B(Second Child(ren)) Enrollment Schedule',
onschedule_model='flourish_caregiver.onschedulecohortbenrollment',
offschedule_model='flourish_caregiver.caregiveroffschedule',
consent_model='flourish_caregiver.subjectconsent',
appointment_model='edc_appointment.appointment')
b_enrollment2_schedule_1.add_visit(visit=visit2000)
b_enrollment3_schedule_1 = Schedule(
name='b_enrol3_schedule1',
sequence='1',
verbose_name='Cohort B(Third Child(ren)) Enrollment Schedule',
onschedule_model='flourish_caregiver.onschedulecohortbenrollment',
visit = Visit(
code='1000',
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
requisitions=None,
crfs=crfs,
requisitions_unscheduled=None,
crfs_unscheduled=None,
allow_unscheduled=False,
facility_name='5-day-clinic')
schedule = Schedule(
name='schedule1',
onschedule_model='edc_appointment.onscheduleone',
offschedule_model='edc_appointment.offscheduleone',
appointment_model='edc_appointment.appointment',
consent_model='edc_consent.subjectconsent')
visit_schedule = VisitSchedule(
name='visit_schedule',
offstudy_model='edc_appointment.subjectoffstudy',
death_report_model='edc_appointment.deathreport',
locator_model='edc_locator.subjectlocator')
schedule.add_visit(visit)
visit_schedule.add_schedule(schedule)
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
title="Baseline",
requisitions=None,
crfs=crfs,
requisitions_unscheduled=None,
crfs_unscheduled=None,
allow_unscheduled=False,
facility_name="5-day-clinic",
)
schedule = Schedule(
name="schedule1",
onschedule_model="adverse_event_app.onschedule",
offschedule_model="adverse_event_app.StudyTerminationConclusion",
appointment_model="edc_appointment.appointment",
consent_model="adverse_event_app.subjectconsent",
)
visit_schedule = VisitSchedule(
name="visit_schedule",
offstudy_model="edc_offstudy.subjectoffstudy",
death_report_model="adverse_event_app.deathreport",
locator_model="edc_locator.subjectlocator",
)
schedule.add_visit(visit)
visit_schedule.add_schedule(schedule)
if allow_unscheduled is None else allow_unscheduled,
crfs_unscheduled=crfs_unscheduled
or default_crfs_unscheduled,
requisitions_unscheduled=requisitions_unscheduled
or default_requisitions,
crfs_prn=crfs_prn or default_crfs_prn,
requisitions_prn=requisitions_prn
or default_requisitions_prn,
**kwargs)
# schedule for new participants
schedule = Schedule(
name=SCHEDULE,
verbose_name="Day 1 to Week 16 Follow-up",
onschedule_model="ambition_prn.onschedule",
offschedule_model="ambition_prn.studyterminationconclusion",
consent_model="ambition_subject.subjectconsent",
appointment_model="edc_appointment.appointment",
)
visit0 = Visit(
code=DAY1,
title="Day 1",
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=0),
requisitions=requisitions_d1,
crfs=crfs_d1,
requisitions_prn=FormsCollection(
*[r for r in default_requisitions_prn if r.panel != chemistry_panel]),
super().__init__(allow_unscheduled=True
if allow_unscheduled is None else allow_unscheduled,
crfs_unscheduled=crfs_unscheduled
or infant_crfs_unscheduled,
requisitions_unscheduled=requisitions_unscheduled
or default_requisitions,
crfs_prn=crfs_prn,
requisitions_prn=requisitions_prn
or infant_requisitions_prn,
**kwargs)
infant_schedule_v1 = Schedule(
name='infant_schedule_v1',
verbose_name='Day 1 to 36 months Follow-up V1',
onschedule_model='td_infant.onscheduleinfantbirth',
offschedule_model='td_infant.infantoffschedule',
consent_model='td_infant.infantdummysubjectconsent',
appointment_model='td_infant.appointment')
visit2000 = Visit(code='2000',
title='Birth V1',
timepoint=0,
rbase=relativedelta(months=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=0),
requisitions=infant_birth_requisitions,
crfs=infant_crf_2000,
facility_name='5-day clinic')
visit2010 = Visit(code='2010',
if allow_unscheduled is None else allow_unscheduled,
crfs_unscheduled=crfs_unscheduled
or maternal_crfs_unscheduled,
requisitions_unscheduled=requisitions_unscheduled
or default_requisitions,
crfs_prn=crfs_prn,
requisitions_prn=requisitions_prn
or default_requisitions_prn,
**kwargs)
# TODO: Add PRN for visits.
maternal_labour_del_schedule_v3 = Schedule(
name='mld_schedule_3',
verbose_name='Day 1 to 36 months Follow-up V3',
onschedule_model='td_maternal.onschedulematernallabourdel',
offschedule_model='td_maternal.maternaloffschedule',
consent_model='td_maternal.subjectconsent',
appointment_model='edc_appointment.appointment')
visit2000 = Visit(code='2000M',
title='Delivery Visit V3',
timepoint=30,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=0),
requisitions=requisitions_followup,
crfs=crf_2000,
facility_name='5-day clinic')
visit2010 = Visit(code='2010M',
**kwargs):
super().__init__(allow_unscheduled=True
if allow_unscheduled is None else allow_unscheduled,
crfs_unscheduled=crfs_unscheduled
or child_crfs_unscheduled,
requisitions_unscheduled=requisitions_unscheduled,
crfs_prn=crfs_prn,
requisitions_prn=requisitions_prn,
**kwargs)
# Enrollment Schedule
child_c_enrollment_schedule_1 = Schedule(
name='child_c_enrol_schedule1',
sequence='1',
verbose_name='Cohort C Child Enrollment Schedule',
onschedule_model='flourish_child.onschedulechildcohortcenrollment',
offschedule_model='flourish_child.childoffschedule',
consent_model='flourish_child.childdummysubjectconsent',
appointment_model='flourish_child.appointment')
visit2000 = Visit(code='2000',
title='Cohort C Child Enrollment Visit',
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(months=3),
requisitions=None,
crfs=child_c_crf_2000,
facility_name='5-day clinic')
child_c_enrollment_schedule_1.add_visit(visit=visit2000)
**kwargs):
super().__init__(allow_unscheduled=True
if allow_unscheduled is None else allow_unscheduled,
crfs_unscheduled=crfs_unscheduled
or child_crfs_unscheduled,
requisitions_unscheduled=requisitions_unscheduled,
crfs_prn=crfs_prn,
requisitions_prn=requisitions_prn,
**kwargs)
# Enrollment Schedule
child_a_enrollment_schedule_1 = Schedule(
name='child_a_enrol_schedule1',
sequence='1',
verbose_name='Cohort A Child Enrollment Schedule',
onschedule_model='flourish_child.onschedulechildcohortaenrollment',
offschedule_model='flourish_child.childoffschedule',
consent_model='flourish_child.childdummysubjectconsent',
appointment_model='flourish_child.appointment')
visit2000 = Visit(code='2000',
title='Cohort A Child Enrollment Visit',
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(months=3),
requisitions=None,
crfs=child_a_crf_2000,
facility_name='5-day clinic')
child_a_enrollment_schedule_1.add_visit(visit=visit2000)
from dateutil.relativedelta import relativedelta
from edc_visit_schedule import Schedule, Visit
from .crfs import crf
from .requisitions import requisitions
# schedule for new participants
pre_flourish_schedule = Schedule(
name='pre_flourish_schedule',
verbose_name='Pre Flourish Schedule',
onschedule_model='pre_flourish.onschedulepreflourish',
offschedule_model='pre_flourish.preflourishoffstudy',
consent_model='pre_flourish.preflourishconsent',
appointment_model='edc_appointment.appointment')
visit0 = Visit(code='1000',
title='Enrollment Visit',
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=0),
requisitions=requisitions,
crfs=crf.get(1000),
facility_name='5-day clinic')
pre_flourish_schedule.add_visit(visit=visit0)
super().__init__(
allow_unscheduled=True
if allow_unscheduled is None else allow_unscheduled,
crfs_unscheduled=crfs_unscheduled, # or default_crfs_unscheduled,
requisitions_unscheduled=requisitions_unscheduled
or default_requisitions,
crfs_prn=crfs_prn, # or default_crfs_prn,
requisitions_prn=requisitions_prn, # or default_requisitions_prn,
**kwargs)
# schedule for new participants
schedule = Schedule(
name=SCHEDULE,
verbose_name="Day 1 to Month 12 Follow-up",
onschedule_model="inte_prn.onschedule",
offschedule_model="inte_prn.endofstudy",
consent_model="inte_consent.subjectconsent",
appointment_model="edc_appointment.appointment",
)
visit00 = Visit(
code=DAY1,
title="Day 1",
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=0),
requisitions=requisitions_d1,
crfs=crfs_d1,
facility_name="7-day-clinic",
)
from edc_visit_schedule import Schedule
from .quarterly_schedules import a_quarterly1_schedule_1
# secondary Aims Schedules
a_sec_quart1_schedule_1 = Schedule(
name='a_sec_quart1_schedule1',
sequence='1',
verbose_name='Cohort A(First Child(ren)) Sec Quarterly Aims Schedule',
onschedule_model='flourish_caregiver.onschedulecohortasecquart',
offschedule_model='flourish_caregiver.caregiveroffschedule',
consent_model='flourish_caregiver.subjectconsent',
appointment_model='edc_appointment.appointment')
a_sec_quart2_schedule_1 = Schedule(
name='a_sec_quart2_schedule1',
sequence='1',
verbose_name='Cohort A(Second Child(ren)) Sec Quarterly Aims Schedule',
onschedule_model='flourish_caregiver.onschedulecohortasecquart',
offschedule_model='flourish_caregiver.caregiveroffschedule',
consent_model='flourish_caregiver.subjectconsent',
appointment_model='edc_appointment.appointment')
a_sec_quart3_schedule_1 = Schedule(
name='a_sec_quart3_schedule1',
sequence='1',
verbose_name='Cohort A(Third Child(ren)) Sec Quarterly Aims Schedule',
onschedule_model='flourish_caregiver.onschedulecohortasecquart',
offschedule_model='flourish_caregiver.caregiveroffschedule',
consent_model='flourish_caregiver.subjectconsent',
appointment_model='edc_appointment.appointment')
if allow_unscheduled is None else allow_unscheduled,
crfs_unscheduled=crfs_unscheduled
or default_crfs_unscheduled,
requisitions_unscheduled=requisitions_unscheduled
or default_requisitions,
crfs_prn=crfs_prn or default_crfs_prn,
requisitions_prn=requisitions_prn
or default_requisitions_prn,
**kwargs)
# schedule for new participants
schedule = Schedule(
name='schedule',
verbose_name='Day 1 to Week 16 Follow-up',
onschedule_model='ambition_prn.onschedule',
offschedule_model='ambition_prn.studyterminationconclusion',
consent_model='ambition_subject.subjectconsent',
appointment_model='edc_appointment.appointment')
visit0 = Visit(
code=DAY1,
title='Day 1',
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=0),
requisitions=requisitions_d1,
crfs=crfs_d1,
requisitions_prn=FormsCollection(
*[r for r in default_requisitions_prn if r.panel != chemistry_panel]),
def setUp(self):
Appointment.objects.all().delete()
self.subject_identifier = "12345"
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="edc_offstudy.subjectoffstudy",
death_report_model="edc_appointment.deathreport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="edc_appointment.onschedule",
offschedule_model="edc_appointment.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="edc_appointment.subjectconsent",
)
self.visit1000 = Visit(
code="1000",
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
facility_name="7-day-clinic",
)
self.visit1001 = Visit(
code="1001",
timepoint=1,
rbase=relativedelta(days=14),
rlower=relativedelta(days=1), # one day before base
rupper=relativedelta(days=6),
facility_name="7-day-clinic",
)
self.visit1010 = Visit(
code="1010",
timepoint=2,
rbase=relativedelta(days=28),
rlower=relativedelta(days=6), # one day before base
rupper=relativedelta(days=6),
facility_name="7-day-clinic",
)
self.schedule.add_visit(self.visit1000)
self.schedule.add_visit(self.visit1001)
self.schedule.add_visit(self.visit1010)
self.visit_schedule.add_schedule(self.schedule)
site_visit_schedules._registry = {}
site_visit_schedules.register(visit_schedule=self.visit_schedule)
app_config = django_apps.get_app_config("edc_facility")
class Meta:
label_lower = ""
class DummyAppointmentObj:
subject_identifier = self.subject_identifier
visit_schedule = self.visit_schedule
schedule = self.schedule
facility = app_config.get_facility(name="7-day-clinic")
_meta = Meta()
self.model_obj = DummyAppointmentObj()
crfs_prn=None, requisitions_prn=None,
allow_unscheduled=None, **kwargs):
super().__init__(
allow_unscheduled=True if allow_unscheduled is None else allow_unscheduled,
crfs_unscheduled=crfs_unscheduled or maternal_crfs_unscheduled,
requisitions_unscheduled=requisitions_unscheduled or default_requisitions,
crfs_prn=crfs_prn,
requisitions_prn=requisitions_prn or default_requisitions_prn,
**kwargs)
# TODO: Add PRN for visits.
antenatal_membership_schedule_1 = Schedule(
name='anv_membership_v1',
verbose_name='Antenatal Visit Membership v1',
onschedule_model='td_maternal.onscheduleantenatalvisitmembership',
offschedule_model='td_maternal.maternaloffschedule',
consent_model='td_maternal.subjectconsent',
appointment_model='edc_appointment.appointment')
visit1010 = Visit(
code='1010M',
title='Antenatal Visit 1',
timepoint=5,
rbase=relativedelta(days=1),
rlower=relativedelta(days=0),
rupper=relativedelta(days=0),
requisitions=requisitions_1010m,
crfs=crf_1010,
facility_name='5-day clinic')
facility_name='5-day-clinic')
visit2 = Visit(
code='3000',
title='Day 3',
timepoint=2,
rbase=relativedelta(days=2),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
requisitions=requisitions3000,
crfs=crfs2,
facility_name='5-day-clinic')
schedule = Schedule(
name='schedule',
onschedule_model='edc_metadata.onschedule',
offschedule_model='edc_metadata.offschedule',
consent_model='edc_metadata.subjectconsent',
appointment_model='edc_appointment.appointment')
schedule.add_visit(visit0)
schedule.add_visit(visit1)
schedule.add_visit(visit2)
visit_schedule = VisitSchedule(
name='visit_schedule',
offstudy_model='edc_metadata.subjectoffstudy',
death_report_model='edc_metadata.deathreport')
visit_schedule.add_schedule(schedule)
crfs_unscheduled=crfs_unscheduled or default_crfs_unscheduled,
requisitions_unscheduled=requisitions_unscheduled
or default_requisitions,
crfs_prn=crfs_prn or default_crfs_prn,
requisitions_prn=requisitions_prn, # or default_requisitions_prn,
crfs_missed=crfs_missed,
**kwargs,
)
# schedule for new participants
schedule_hiv = Schedule(
name=SCHEDULE_HIV,
verbose_name="Day 1 to Month 12",
onschedule_model="inte_prn.onschedulehiv",
offschedule_model="inte_prn.offschedulehiv",
consent_model="inte_consent.subjectconsent",
appointment_model="edc_appointment.appointment",
loss_to_followup_model="inte_prn.losstofollowup",
)
schedule_ncd = Schedule(
name=SCHEDULE_NCD,
verbose_name="Day 1 to Month 12",
onschedule_model="inte_prn.onschedulencd",
offschedule_model="inte_prn.offschedulencd",
consent_model="inte_consent.subjectconsent",
appointment_model="edc_appointment.appointment",
loss_to_followup_model="inte_prn.losstofollowup",
)
crfs = FormsCollection(
Crf(show_order=1, model="edc_timepoint.crfone", required=True),
Crf(show_order=2, model="edc_timepoint.crftwo", required=True),
)
visit_schedule1 = VisitSchedule(
name="visit_schedule1",
offstudy_model="edc_offstudy.subjectoffstudy",
death_report_model="edc_timepoint.deathreport",
locator_model="edc_locator.subjectlocator",
)
schedule1 = Schedule(
name="schedule1",
onschedule_model="edc_timepoint.onschedule",
offschedule_model="edc_timepoint.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="edc_timepoint.subjectconsent",
)
visits = []
for index in range(0, 4):
visits.append(
Visit(
code=f"{index + 1}000",
title=f"Day {index + 1}",
timepoint=index,
rbase=relativedelta(days=index),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
crfs=crfs,
offstudy_model="edc_offstudy.subjectoffstudy",
death_report_model="edc_visit_tracking.deathreport",
locator_model="edc_locator.subjectlocator",
)
visit_schedule2 = VisitSchedule(
name="visit_schedule2",
offstudy_model="edc_offstudy.subjectoffstudy",
death_report_model="edc_visit_tracking.deathreport",
locator_model="edc_locator.subjectlocator",
)
schedule1 = Schedule(
name="schedule1",
onschedule_model="edc_visit_tracking.onscheduleone",
offschedule_model="edc_visit_tracking.offscheduleone",
consent_model="edc_visit_tracking.subjectconsent",
appointment_model="edc_appointment.appointment",
)
schedule2 = Schedule(
name="schedule2",
onschedule_model="edc_visit_tracking.onscheduletwo",
offschedule_model="edc_visit_tracking.offscheduletwo",
consent_model="edc_visit_tracking.subjectconsent",
appointment_model="edc_appointment.appointment",
)
visits = []
for index in range(0, 4):
visits.append(
super().__init__(
allow_unscheduled=True
if allow_unscheduled is None else allow_unscheduled,
crfs_unscheduled=crfs_unscheduled, # or default_crfs_unscheduled,
requisitions_unscheduled=requisitions_unscheduled
or default_requisitions,
crfs_prn=crfs_prn, # or default_crfs_prn,
requisitions_prn=requisitions_prn, # or default_requisitions_prn,
**kwargs)
# schedule for new participants
schedule_hiv = Schedule(
name=SCHEDULE_HIV,
verbose_name="Day 1 to Month 12 HIV Follow-up",
onschedule_model="inte_prn.onschedulehiv",
offschedule_model="inte_prn.endofstudy",
consent_model="inte_consent.subjectconsent",
appointment_model="edc_appointment.appointment",
)
schedule_ncd = Schedule(
name=SCHEDULE_NCD,
verbose_name="Day 1 to Month 12 NCD Follow-up",
onschedule_model="inte_prn.onschedulencd",
offschedule_model="inte_prn.endofstudy",
consent_model="inte_consent.subjectconsent",
appointment_model="edc_appointment.appointment",
)
visit00 = Visit(
code=DAY1,
