def identity_from_jsonObject(jsonObj):
n = jsonObj.get('name')
des = jsonObj.get('description')
u = jsonObj.get('url')
lm = RequestBase.dateTimeFromJsonString(jsonObj.get('modified'))
c = RequestBase.dateTimeFromJsonString(jsonObj.get('created'))
id = int(jsonObj.get('id'))
return ExternalSystem(name=n, description=des, url=u, modified=lm, created=c, id=id)
def identity_from_jsonObject(jsonObj):
n = jsonObj.get('name')
des = jsonObj.get('description')
lm = RequestBase.dateTimeFromJsonString(jsonObj.get('modified'))
c = RequestBase.dateTimeFromJsonString(jsonObj.get('created'))
gid = int(jsonObj.get('id'))
il = jsonObj.get('is_locking', False)
ek = jsonObj.get('ehb_key')
ck = None
return Group(name=n, description=des, is_locking=il, ehb_key=ek,
client_key=ck, modified=lm, created=c, id=gid)
def identity_from_jsonObject(jsonObj):
fn = jsonObj.get('first_name')
ln = jsonObj.get('last_name')
org_id = int(jsonObj.get('organization'))
org_subj_id = jsonObj.get('organization_subject_id')
org_id_label = jsonObj.get('organization_id_label')
dob = RequestBase.dateFromString(jsonObj.get('dob'))
lm = RequestBase.dateTimeFromJsonString(jsonObj.get('modified'))
c = RequestBase.dateTimeFromJsonString(jsonObj.get('created'))
id = int(jsonObj.get('id'))
sub = Subject(first_name=fn, last_name=ln, organization_id=org_id,
organization_subject_id=org_subj_id,
organization_id_label=org_id_label, dob=dob,
modified=lm, created=c, id=id)
return sub
def identity_from_jsonObject(jsonObj):
es_id = int(jsonObj.get('external_system'))
s_id = int(jsonObj.get('subject'))
lm = RequestBase.dateTimeFromJsonString(jsonObj.get('modified'))
c = RequestBase.dateTimeFromJsonString(jsonObj.get('created'))
id = int(jsonObj.get('id'))
rec_id = jsonObj.get('record_id')
p = jsonObj.get('path')
lbl = jsonObj.get('label')
return ExternalRecord(
record_id=rec_id,
external_system_id=es_id,
subject_id=s_id,
path=p,
modified=lm,
created=c,
id=id,
label_id=lbl
)
def json_from_identity(subject):
if not hasattr(subject, 'group_name'):
subject.group_name = ''
o = {}
o = {
'first_name': subject.first_name,
'last_name': subject.last_name,
'group_name': subject.group_name,
'organization_subject_id': subject.organization_subject_id,
'organization': subject.organization_id,
'organization_id_label': subject.organization_id_label,
'dob': RequestBase.stringFromDate(subject.dob),
'id': subject.id
}
if subject.modified:
o['modified'] = subject.modified.strftime('%Y-%m-%d %H:%M:%S.%f')
if subject.created:
o['created'] = subject.created.strftime('%Y-%m-%d %H:%M:%S.%f')
return json.dumps(o)
def __init__(self, host, root_path='', secure=False, api_key=None):
RequestBase.__init__(self, host, '{0}/api/group/'.format(root_path), secure, api_key)
def onSuccess(g, o):
g.current_client_key(g.client_key)
g.modified = RequestBase.dateTimeFromJsonString(o.get('modified'))
def onSuccess(grp, o):
grp.id = int(o.get('id'))
grp.created = RequestBase.dateTimeFromJsonString(o.get('created'))
grp.modified = RequestBase.dateTimeFromJsonString(o.get('modified'))
grp.ehb_key = o.get('ehb_key')
def onSuccess(s, o):
s.modified = RequestBase.dateTimeFromJsonString(o.get('modified'))
def onSuccess(s, o):
s.id = int(o.get('id'))
s.created = RequestBase.dateTimeFromJsonString(o.get('created'))
s.modified = RequestBase.dateTimeFromJsonString(o.get('modified'))
def edit_subject(request, protocol_id, subject_ehb_id):
'''
renders / processes a subject edit form to update subject phi in ehb system
'''
try:
protocol = Protocol.objects.get(pk=protocol_id)
# is this user authorized for this protocol? A user could accidently /
# maliciously manually enter the URL for an unauthorized protocol
if not protocol.isUserAuthorized(request.user):
return forbidden(request)
organizations = protocol.organizations.all()
s_rh = ServiceClient.get_rh_for(record_type=ServiceClient.SUBJECT)
msg = None
try:
subject = s_rh.get(id=subject_ehb_id)
'''
Is this subject on this protocol? A user could accidently /
maliciously manually enter the URL a protocol they are authorized
on but for which the subject is not on OR the link could be stale
because the ehb primary key is used to ask for this subject record.
this key is NOT stored in this app's DB. Rather it is dynamically
added to the link in the subject select page. There is the unlikely
chance that the link becomes stale between the time it is rendered
and the time it is clicked. Hence, a second check is done to make
sure this subject is on this protocol. This check done without
reference to the ehb's primary key values
'''
if not protocol.isSubjectOnProtocol(subject):
raise Http404
except PageNotFound:
raise Http404
if request.method == 'POST':
# process the form
form = EditSubjectForm(request.POST)
if form.is_valid():
success, subject, errors = form.save(subject=subject,
protocol=protocol)
if success:
cache.delete('{0}_subjects'.format(protocol.id))
return HttpResponseRedirect(
'%s/dataentry/protocol/%s/' %
(ServiceClient.self_root_path, protocol_id))
else:
msg = []
selected_organization = form.selectedOrg()
for error in errors:
if error == ErrorConstants.ERROR_SUBJECT_ORG_ID_EXISTS:
l = Organization.objects.get(
pk=int(selected_organization)).subject_id_label
msg.append(
'A Subject record with this %s is already in the ehb-service system.'
% l)
else:
msg.append(error)
else:
selected_organization = form.selectedOrg()
else:
# render new form for this subject
context = {
'subject_id': str(subject.organization_subject_id),
'subject_id_verify': str(subject.organization_subject_id),
'first_name': subject.first_name,
'last_name': subject.last_name,
'dob': RequestBase.stringFromDate(subject.dob)
}
form = EditSubjectForm(context)
o_rh = ServiceClient.get_rh_for(
record_type=ServiceClient.ORGANIZATION)
selected_organization = '0'
try:
org = o_rh.get(id=subject.organization_id)
for o in organizations:
if o.name == org.name:
selected_organization = str(o.id)
except PageNotFound:
raise Http404
return render_to_response('subject_edit.html', {
'errors': msg,
'form': form,
'selected_organization': selected_organization,
'protocol': protocol,
'organizations': organizations,
'subject': subject,
'root_path': ServiceClient.self_root_path,
'redcap_status': getRedcapStatus()
},
context_instance=RequestContext(request))
except Protocol.DoesNotExist:
raise Http404
def __init__(self, host, root_path='', secure=False, api_key=None):
RequestBase.__init__(self, host, '{0}/api/externalrecord/'.format(root_path), secure, api_key)
self.root_path = root_path
def onSuccess(er, o):
er.id = int(o.get('id'))
er.created = RequestBase.dateTimeFromJsonString(o.get('created'))
er.modified = RequestBase.dateTimeFromJsonString(o.get('modified'))