def test_Obsolete_output_dataFormat_URI_term(self):
"""Sending as 'dataFormat': obsolete URI and term
Purpose:
Sending obsolete URI and term to get an error
Sent:
Obsolete URI and term
Expected outcome:
Error returned, URI is invalid
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_Obsolete_output_dataFormat_URI_term'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'output': [{
'dataType': {
'uri': 'http://edamontology.org/data_2044',
'term': 'Sequence'
},
'dataFormat': [{
'uri': 'http://edamontology.org/format_1228',
'term': 'UniGene entry format'
}]
}]
}]
expected_response = {
'function': [{
'output': [{
'dataFormat': [{
'general_errors':
['Invalid URI: http://edamontology.org/format_1228.']
}]
}]
}]
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_400_BAD_REQUEST)
self.assertEqual(json.loads(response.content), expected_response)
expected_response = {'detail': 'Not found.'}
response = self.client.get(
'/tool/test_Obsolete_output_dataFormat_URI_term')
self.assertEqual(response.status_code, status.HTTP_404_NOT_FOUND)
self.assertEqual(json.loads(response.content), expected_response)
def test_inp_dFormat_array_array(self):
"""Sending array of arrays as 'dataFormat'
Purpose:
What happens when we send wrong type as the field (this case - array of numbers)
Sent:
Array of arrays of mixed types
Expected outcome:
Error informing about incorrect value
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_inp_dFormat_array_array'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'input': [{
'dataType': {
'uri': 'http://edamontology.org/data_2044',
'term': 'Sequence'
},
'dataFormat': [[2, 3], '7']
}]
}]
expected_response = {
'function': [{
'input': [{
'dataFormat': [{
'general_errors':
['Invalid data. Expected a dictionary, but got list.']
}, {
'general_errors': [
'Invalid data. Expected a dictionary, but got unicode.'
]
}]
}]
}]
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_400_BAD_REQUEST)
self.assertEqual(json.loads(response.content), expected_response)
expected_response = {'detail': 'Not found.'}
response = self.client.get('/tool/test_inp_dFormat_array_array')
self.assertEqual(response.status_code, status.HTTP_404_NOT_FOUND)
self.assertEqual(json.loads(response.content), expected_response)
def test_functionDescription_number(self):
"""Sending number as 'functionDescription'
Purpose:
What happens when we send wrong type as the field (this case - number)
Sent:
Number
Expected outcome:
Resource registered with stringified number.
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_functionDescription_number'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
1234567890
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_functionDescription_number',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_functionDescription_number'
expected_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
u'1234567890',
'functionHandle':
None,
'input': [],
'output': []
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_out_dFormat_dict(self):
"""Sending dictionary as 'dataFormat'
Purpose:
What happens when we send wrong type as the field (this case - dict of mixed types)
Sent:
Dictionary with mixed types (strings and arrays)
Expected outcome:
Error informing about incorrect value
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_out_dFormat_dict'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'output': [{
'dataType': {
'uri': 'http://edamontology.org/data_2044',
'term': 'Sequence'
},
'dataFormat': {
'a': 'b',
'c': [1, 2, 3]
}
}]
}]
expected_response = {
'function': [{
'output': [{
'dataFormat': {
'general_errors':
['Expected a list of items but got type "dict".']
}
}]
}]
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_400_BAD_REQUEST)
self.assertEqual(json.loads(response.content), expected_response)
expected_response = {'detail': 'Not found.'}
response = self.client.get('/tool/test_out_dFormat_dict')
self.assertEqual(response.status_code, status.HTTP_404_NOT_FOUND)
self.assertEqual(json.loads(response.content), expected_response)
def test_functionDescription_correct(self):
"""Sending string as 'functionDescription'
Purpose:
Basic test of successful sending of a string as functionDescription
Sent:
functionDescription as a string
Expected outcome:
Resource registered with the sent string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_functionDescription_correct'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
'Just a functionDescription'
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_functionDescription_correct',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_functionDescription_correct'
expected_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
'Just a functionDescription',
'functionHandle':
None,
'input': [],
'output': []
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_functionDescription_1000_length(self):
"""Sending 1000 times character 'a' as 'functionDescription'
Purpose:
What happens when we send string of max allowed length
Sent:
1000 times 'a'
Expected outcome:
Resource registered with 1000 times 'a' as a functionDescription
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_functionDescription_1000_length'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
1000 * 'a'
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get(
'/tool/test_functionDescription_1000_length', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_functionDescription_1000_length'
expected_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
1000 * 'a',
'functionHandle':
None,
'input': [],
'output': []
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_functionDescription_non_ascii(self):
"""Sending string with non-ascii characters as 'functionDescription'
Purpose:
What happens when we send non-ascii characters
Sent:
String with non-ascii characters
Expected outcome:
Resource registered with the non-ascii characters
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_functionDescription_non_ascii'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
u'ąęćżźń£ Ø Δ ♥ †'
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_functionDescription_non_ascii',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_functionDescription_non_ascii'
expected_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
u'ąęćżźń£ Ø Δ ♥ †',
'functionHandle':
None,
'input': [],
'output': []
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_mismatch_correct_inp_dataType_URI_term(self):
"""Sending as 'dataType': mismatched URI and term
Purpose:
Sending correct URI with mismatched term
Sent:
Correct, but mismatched URI/term pair
Expected outcome:
Error returned, term does not match the URI
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_mismatch_correct_inp_dataType_URI_term'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'input': [{
'dataType': {
'uri': 'http://edamontology.org/data_0006',
'term': 'Ontology'
}
}]
}]
expected_response = {
'function': [{
'input': [{
'dataType': {
'general_errors': [
'The term does not match the URI: Ontology, http://edamontology.org/data_0006.'
]
}
}]
}]
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_400_BAD_REQUEST)
self.assertEqual(json.loads(response.content), expected_response)
expected_response = {'detail': 'Not found.'}
response = self.client.get(
'/tool/test_mismatch_correct_inp_dataType_URI_term')
self.assertEqual(response.status_code, status.HTTP_404_NOT_FOUND)
self.assertEqual(json.loads(response.content), expected_response)
def test_operation_duplicate(self):
"""Sending two identical strings as 'operation'
Purpose:
Checking if the system will remove duplicate elements
Sent:
Two identical operation strings
Expected outcome:
Resource registered without the duplicate string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_operation_duplicate'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004'
}, {
'uri': 'http://edamontology.org/operation_0004'
}]
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_operation_duplicate',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_operation_duplicate'
expected_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
None,
'functionHandle':
None,
'input': [],
'output': []
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertItemsEqual(expected_resource, received_resource)
def test_operation_extra_fields(self):
"""Sending array of dicts with extra fields as 'operation'
Purpose:
What happens when we send wrong type as the field (this case - add some fields to the object)
Sent:
Array of arrays of mixed types
Expected outcome:
Resource is registered, extra fields are ignored.
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_operation_extra_fields'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'some': 'field'
}]
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_operation_extra_fields',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_operation_extra_fields'
expected_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
None,
'functionHandle':
None,
'input': [],
'output': []
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertItemsEqual(expected_resource, received_resource)
def test_inp_dFormat_number(self):
"""Sending number as 'dataFormat'
Purpose:
What happens when we send wrong type as the field (this case - number)
Sent:
Number
Expected outcome:
Error informing about incorrect value
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_inp_dFormat_number'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'input': [{
'dataType': {
'uri': 'http://edamontology.org/data_2044',
'term': 'Sequence'
},
'dataFormat': 1234567890
}]
}]
expected_response = {
'function': [{
'input': [{
'dataFormat': {
'general_errors':
['Expected a list of items but got type "int".']
}
}]
}]
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_400_BAD_REQUEST)
self.assertEqual(json.loads(response.content), expected_response)
expected_response = {'detail': 'Not found.'}
response = self.client.get('/tool/test_inp_dFormat_number')
self.assertEqual(response.status_code, status.HTTP_404_NOT_FOUND)
self.assertEqual(json.loads(response.content), expected_response)
def test_operation_Pass_URI_only(self):
"""Sending as 'operation': correct URI
Purpose:
Sending correct URI
Sent:
Correct URI
Expected outcome:
Resource registered - URI resolves to a concept, term filled in
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_operation_Pass_URI_only'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004'
}]
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_operation_Pass_URI_only',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_operation_Pass_URI_only'
expected_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
None,
'functionHandle':
None,
'input': [],
'output': []
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertItemsEqual(expected_resource, received_resource)
def test_out_dFormat_empty_array(self):
"""Sending an empty arrays as 'dataFormat'
Purpose:
What happens when we send wrong type as the field (this case - empty array)
Sent:
Empty array
Expected outcome:
Error informing about empty array
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_out_dFormat_empty_array'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'output': [{
'dataType': {
'uri': 'http://edamontology.org/data_2044',
'term': 'Sequence'
},
'dataFormat': []
}]
}]
expected_response = {
'function': [{
'output': [{
'dataFormat': {
'general_errors': ['This list may not be empty.']
}
}]
}]
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_400_BAD_REQUEST)
self.assertEqual(json.loads(response.content), expected_response)
expected_response = {'detail': 'Not found.'}
response = self.client.get('/tool/test_out_dFormat_empty_array')
self.assertEqual(response.status_code, status.HTTP_404_NOT_FOUND)
self.assertEqual(json.loads(response.content), expected_response)
def test_functionHandle_301_length(self):
"""Sending 301 times character 'a' as 'functionHandle'
Purpose:
What happens when we send more characters than allowed
Sent:
301 times 'a'
Expected outcome:
Error message informing user of the string length limit
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_functionHandle_301_length'
sent_resource['function'] = [
{
'operation': [
{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}
],
'functionHandle': 301*'a'
}
]
expected_response = {
'function': [
{
'functionHandle': [
'Ensure this field has no more than 300 characters.'
]
}
]
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_400_BAD_REQUEST)
self.assertEqual(json.loads(response.content), expected_response)
expected_response = {
'detail': 'Not found.'
}
response = self.client.get('/tool/test_functionHandle_301_length')
self.assertEqual(response.status_code, status.HTTP_404_NOT_FOUND)
self.assertEqual(json.loads(response.content), expected_response)
def test_functionHandle_empty_none(self):
"""Sending null/None as 'functionHandle'
Purpose:
What happens when we send None
Sent:
None
Expected outcome:
Error informing that this field cannot be null/None
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_functionHandle_empty_none'
sent_resource['function'] = [
{
'operation': [
{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}
],
'functionHandle': None
}
]
expected_response = {
'function': [
{
'functionHandle': [
'This field may not be null.'
]
}
]
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_400_BAD_REQUEST)
self.assertEqual(json.loads(response.content), expected_response)
expected_response = {
'detail': 'Not found.'
}
response = self.client.get('/tool/test_functionHandle_empty_none')
self.assertEqual(response.status_code, status.HTTP_404_NOT_FOUND)
self.assertEqual(json.loads(response.content), expected_response)
def test_incorrect_input_dataType_URI(self):
"""Sending as 'dataType': incorrect URI
Purpose:
Sending incorrect URI to get an error
Sent:
Obsolete URI
Expected outcome:
Error returned, URI is invalid
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_incorrect_input_dataType_URI'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'input': [{
'dataType': {
'uri': 'http://edamontology.org/invalid',
}
}]
}]
expected_response = {
'function': [{
'input': [{
'dataType': {
'general_errors':
['Invalid URI: http://edamontology.org/invalid.']
}
}]
}]
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_400_BAD_REQUEST)
self.assertEqual(json.loads(response.content), expected_response)
expected_response = {'detail': 'Not found.'}
response = self.client.get('/tool/test_incorrect_input_dataType_URI')
self.assertEqual(response.status_code, status.HTTP_404_NOT_FOUND)
self.assertEqual(json.loads(response.content), expected_response)
def test_inp_dFormat_none(self):
"""Sending a null/None as 'dataFormat'
Purpose:
What happens when we send wrong type as the field (this case - null/None)
Sent:
null/None
Expected outcome:
Error informing about the null/None
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_inp_dFormat_none'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'input': [{
'dataType': {
'uri': 'http://edamontology.org/data_2044',
'term': 'Sequence'
},
'dataFormat': None
}]
}]
expected_response = {
'function': [{
'input': [{
'dataFormat': ['This field may not be null.']
}]
}]
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_400_BAD_REQUEST)
self.assertEqual(json.loads(response.content), expected_response)
expected_response = {'detail': 'Not found.'}
response = self.client.get('/tool/test_inp_dFormat_none')
self.assertEqual(response.status_code, status.HTTP_404_NOT_FOUND)
self.assertEqual(json.loads(response.content), expected_response)
def test_inp_dataType_string(self):
"""Sending as 'dataType': string
Purpose:
What happens when we send wrong type as the field (this case - string)
Sent:
String as dataType
Expected outcome:
Error informing about incorrect value
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_inp_dataType_string'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'input': [{
'dataType': 'just a string'
}]
}]
expected_response = {
'function': [{
'input': [{
'dataType': {
'general_errors': [
'Invalid data. Expected a dictionary, but got unicode.'
]
}
}]
}]
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_400_BAD_REQUEST)
self.assertEqual(json.loads(response.content), expected_response)
expected_response = {'detail': 'Not found.'}
response = self.client.get('/tool/test_inp_dataType_string')
self.assertEqual(response.status_code, status.HTTP_404_NOT_FOUND)
self.assertEqual(json.loads(response.content), expected_response)
def test_docsCitationInstructions_case_sensitive(self):
"""Sending camel case url as 'docsCitationInstructions'
Purpose:
What happens when we send URL with camel case
Sent:
Camel case URL
Expected outcome:
Resource registered with lowercase URL string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_docsCitationInstructions_case_sensitive'
sent_resource['docs'] = {
'docsCitationInstructions': 'HTTP://ExAmPlE.cOm'
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get(
'/tool/test_docsCitationInstructions_case_sensitive',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource[
'id'] = 'test_docsCitationInstructions_case_sensitive'
expected_resource['docs'] = {
'docsCitationInstructions': 'HTTP://ExAmPlE.cOm',
'docsTermsOfUse': None,
'docsDownload': None,
'docsHome': None,
'docsDownloadSource': None,
'docsDownloadBinaries': None,
'docsGithub': None
}
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_usesVersion_dict(self):
"""Sending dictionary as 'usesVersion'
Purpose:
What happens when we send wrong type as the field (this case - dict of mixed types)
Sent:
Dictionary with mixed types (strings and arrays)
Expected outcome:
Resource registered with stringified dictionary.
Note:
Spaces are added to the stringified value.
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_usesVersion_dict'
sent_resource['uses'] = [{
'usesName': 'just a usesName',
'usesVersion': {
'a': 'b',
'c': [1, 2, 3]
}
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_usesVersion_dict',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_usesVersion_dict'
expected_resource['uses'] = [{
'usesName': 'just a usesName',
'usesVersion': "{u'a': u'b', u'c': [1, 2, 3]}",
'usesHomepage': None
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_mirror_array(self):
"""Sending array as 'mirror'
Purpose:
What happens when we send wrong type as the field (this case - array of strings and arrays)
Sent:
Array with mixed types (strings and arrays)
Expected outcome:
Error informing about incorrect value
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_mirror_array'
sent_resource['mirror'] = ['a','b','c',['d']]
expected_response = {
'mirror': [
[
'This is not a valid URL: a.'
],
[
'This is not a valid URL: b.'
],
[
'This is not a valid URL: c.'
],
[
'Wrong type found, expected unicode/string, got array/list.'
]
]
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_400_BAD_REQUEST)
self.assertEqual(json.loads(response.content), expected_response)
expected_response = {
'detail': 'Not found.'
}
response = self.client.get('/tool/test_mirror_array')
self.assertEqual(response.status_code, status.HTTP_404_NOT_FOUND)
self.assertEqual(json.loads(response.content), expected_response)
def test_interfaceDocs_300_length(self):
"""Sending 300 times character 'a' as 'interfaceDocs'
Purpose:
What happens when we send string of max allowed length
Sent:
300 times 'a'
Expected outcome:
Resource registered with 300 times 'a' as a interfaceDocs
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_interfaceDocs_300_length'
sent_resource['interface'] = [
{
'interfaceType': 'API',
'interfaceDocs': 'http://' + 293*'a'
}
]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_interfaceDocs_300_length', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_interfaceDocs_300_length'
expected_resource['interface'] = [
{
'interfaceType': 'API',
'interfaceDocs': 'http://' + 293*'a',
'interfaceSpecURL': None,
'interfaceSpecFormat': None
}
]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_creditsDeveloper_correct_2(self):
"""Sending two strings as 'creditsDeveloper'
Purpose:
Basic test of successful sending of a string as creditsDeveloper
Sent:
creditsDeveloper as a string
Expected outcome:
Resource registered with the sent array of 2 strings
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_creditsDeveloper_correct_2'
sent_resource['credits'] = {
'creditsDeveloper':
['Just a creditsDeveloper', 'another creditsDeveloper']
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_creditsDeveloper_correct_2',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_creditsDeveloper_correct_2'
expected_resource['credits'] = {
'creditsDeveloper':
['Just a creditsDeveloper', 'another creditsDeveloper'],
'creditsContributor': [],
'creditsInstitution': [],
'creditsInfrastructure': [],
'creditsFunding': [],
'creditsAffiliation': []
}
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertItemsEqual(expected_resource, received_resource)
def test_interfaceDocs_non_ascii(self):
"""Sending string with non-ascii characters as 'interfaceDocs'
Purpose:
What happens when we send non-ascii characters
Sent:
String with non-ascii characters
Expected outcome:
Resource registered with non-ascii URL
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_interfaceDocs_non_ascii'
sent_resource['interface'] = [
{
'interfaceType': 'API',
'interfaceDocs': u'http://ąęćżźń£ØΔ♥†.com'
}
]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_interfaceDocs_non_ascii', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_interfaceDocs_non_ascii'
expected_resource['interface'] = [
{
'interfaceType': 'API',
'interfaceDocs': u'http://ąęćżźń£ØΔ♥†.com',
'interfaceSpecURL': None,
'interfaceSpecFormat': None
}
]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_interfaceDocs_case_sensitive(self):
"""Sending camel case url as 'interfaceDocs'
Purpose:
What happens when we send URL with camel case
Sent:
Camel case URL
Expected outcome:
Resource registered with lowercase URL string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_interfaceDocs_case_sensitive'
sent_resource['interface'] = [
{
'interfaceType': 'API',
'interfaceDocs': 'HTTP://ExAmPlE.cOm'
}
]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_interfaceDocs_case_sensitive', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_interfaceDocs_case_sensitive'
expected_resource['interface'] = [
{
'interfaceType': 'API',
'interfaceDocs': 'HTTP://ExAmPlE.cOm',
'interfaceSpecURL': None,
'interfaceSpecFormat': None
}
]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_interfaceDocs_correct(self):
"""Sending a correctly formatted string as 'interfaceDocs'
Purpose:
Basic test of successful sending of a string as interfaceDocs
Sent:
interfaceDocs as a string
Expected outcome:
Resource registered with the sent string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_interfaceDocs_correct'
sent_resource['interface'] = [
{
'interfaceType': 'API',
'interfaceDocs': 'http://example.org'
}
]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_interfaceDocs_correct', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_interfaceDocs_correct'
expected_resource['interface'] = [
{
'interfaceType': 'API',
'interfaceDocs': 'http://example.org',
'interfaceSpecURL': None,
'interfaceSpecFormat': None
}
]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_Topic_Pass_2_topics(self):
"""Sending as 'topic': 2 objects
Purpose:
Sending 2 topic objects to test if saving multiple topics works
Sent:
2 correct URI/term pairs
Expected outcome:
Resource registered with 2 topics
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_Topic_Pass_2_topics'
sent_resource['topic'] = [{
'uri': 'http://edamontology.org/topic_3070',
'term': 'Biology'
}, {
'uri': 'http://edamontology.org/topic_2821',
'term': 'Unicellular eukaryotes'
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_Topic_Pass_2_topics',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_Topic_Pass_2_topics'
expected_resource['topic'] = [{
'uri': 'http://edamontology.org/topic_3070',
'term': 'Biology'
}, {
'uri': 'http://edamontology.org/topic_2821',
'term': 'Unicellular eukaryotes'
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_contactName_dict(self):
"""Sending as 'contactName': dictionary
Purpose:
What happens when we send wrong type as the field (this case - dict of mixed types)
Sent:
Dictionary with mixed types (strings and arrays)
Expected outcome:
Resource registered with stringified value
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_contactName_dict'
sent_resource['contact'] = [{
'contactName': {
'a': 'b',
'c': [1, 2, 3]
},
'contactURL': 'http://example.com'
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_contactName_dict',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_contactName_dict'
expected_resource['contact'] = [{
'contactName': "{u'a': u'b', u'c': [1, 2, 3]}",
'contactURL': 'http://example.com',
'contactEmail': None,
'contactTel': None
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_creditsDeveloper_duplicate(self):
"""Sending two identical strings as 'creditsDeveloper'
Purpose:
Checking if the system will remove duplicate elements
Sent:
Two identical creditsDeveloper strings
Expected outcome:
Resource registered without the duplicate string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_creditsDeveloper_duplicate'
sent_resource['credits'] = {
'creditsDeveloper':
['Just a creditsDeveloper', 'Just a creditsDeveloper']
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_creditsDeveloper_duplicate',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_creditsDeveloper_duplicate'
expected_resource['credits'] = {
'creditsDeveloper': ['Just a creditsDeveloper'],
'creditsDeveloper': [],
'creditsContributor': [],
'creditsInfrastructure': [],
'creditsFunding': [],
'creditsInstitution': []
}
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertItemsEqual(expected_resource, received_resource)
def test_usesHomepage_correct(self):
"""Sending a correctly formatted string as 'usesHomepage'
Purpose:
Basic test of successful sending of a string as usesHomepage
Sent:
usesHomepage as a string
Expected outcome:
Resource registered with the sent string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_usesHomepage_correct'
sent_resource['uses'] = [
{
'usesName': 'just a usesName',
'usesHomepage': 'http://example.org'
}
]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_usesHomepage_correct', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_usesHomepage_correct'
expected_resource['uses'] = [
{
'usesName': 'just a usesName',
'usesHomepage': 'http://example.org',
'usesVersion': None
}
]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)