'''
stk = ImageStack(subwwhh, subwwhh)
for n in nodes:
binip = n.getBinip()
stk.addSlice(binip)
ImagePlus("tt", stk).show()
'''
IJ.log('Linking ...')
dlh = DLH(imp, 3, 10) # linkrange, distance
#dlh.setData(ntd.getXcoordA(), ntd.getYcoordA(), ntd.getFrameA())
dlh.setData(nodes) # a new way, 20130321
nearestneighbor = LinkCostsOnlyDistance()
dlh.doLinking(nearestneighbor, False)
# convert to Tracks object
vttt = VecTrajectoryToTracks()
#vttt.run(dlh.getAll_traj())
vttt.run(dlh.getAll_traj(), nodes)
tracks = vttt.getTracks()
print "tracks", str(tracks.size())
for t in tracks.values():
#print t.getTrackID(), t.getNodes().get(0).getX(), t.getNodes().size(), t.getFrameStart()
print t.getNodes().get(0).getOrgroi()
tracks.accept(TrackReLinker())
# plotting part
vd = VD(imp)
#img2path = '/Volumes/D/Julia20130201-/NucleusSegmentationStudy/20130312/out_bernsen45.tif'
