def test_parent():
df_head = set_gb('data/pristine/NEWGB.csv').head()
df_fam_head = set_fam(df_head)
df_alt_head = set_alt(df_fam_head)
last_alt_head = df_alt_head.ix[5:, :]
assert 'Zelah' not in last_alt_head
assert 'Ythsie' not in last_alt_head
def test_alt_row():
# import ipdb; ipdb.set_trace()
df_head = set_gb('data/pristine/NEWGB.csv').head()
df_fam_head = set_fam(df_head)
df_alt_head = set_alt(df_fam_head)
assert df_alt_head.ix[0, 'name'] == df_fam_head.ix[0, 'name']
assert math.isnan(df_alt_head.ix[0, 'parent'])
def test_alt_has_parent():
df_head = set_gb('data/pristine/NEWGB.csv').head()
df_fam_head = set_fam(df_head)
df_alt_head = set_alt(df_fam_head)
last_alt_head = df_alt_head.ix[5:, :]
for index, row in last_alt_head.iterrows():
assert len(last_alt_head.ix[index, 'parent']) > 0
def test_alt_hasnot_parent():
df_head = set_gb('data/pristine/NEWGB.csv').head()
df_fam_head = set_fam(df_head)
df_alt_head = set_alt(df_fam_head)
for index, row in df_alt_head.iterrows():
for index in range(5):
assert math.isnan(df_alt_head.ix[index, 'parent'])
def test_not_have_altname():
df_head = set_gb('data/pristine/NEWGB.csv').head()
df_alt_head = set_alt(set_fam(df_head))
assert 'altname' not in df_alt_head.columns
assert 'ls_altname' not in df_alt_head.columns
def test_hasparent():
df_head = set_gb('data/pristine/NEWGB.csv').head()
df_alt_head = set_alt(set_fam(df_head))
assert 'parent' in df_alt_head.columns