Пример #1
0
Файл: db.py Проект: jburel/omego
    def __init__(self, sub_parsers):
        super(DbCommand, self).__init__(sub_parsers)

        self.parser = DbParser(self.parser)
        self.parser.add_argument("-n", "--dry-run", action="store_true")

        # TODO: Kind of duplicates Upgrade args.sym/args.server
        self.parser.add_argument('--serverdir',
                                 help='Root directory of the server')
        self.parser.add_argument("dbcommand",
                                 choices=['init', 'upgrade', 'dump'],
                                 help='Initialise or upgrade a database')
        self.parser.add_argument('--dumpfile', help='Database dump file')
Пример #2
0
class DbCommand(Command):
    """
    Administer an OMERO database
    """

    NAME = "db"

    def __init__(self, sub_parsers):
        super(DbCommand, self).__init__(sub_parsers)

        self.parser = DbParser(self.parser)
        self.parser.add_argument("-n", "--dry-run", action="store_true")

        Add = EnvDefault.add
        # TODO: Kind of duplicates Upgrade args.sym/args.server
        Add(self.parser, 'serverdir', 'Root directory of the server')
        self.parser.add_argument(
            "dbcommand",
            choices=['init', 'upgrade'],
            help='Initialise or upgrade a database')

    def __call__(self, args):
        super(DbCommand, self).__call__(args)
        self.configure_logging(args)

        # Since EnvDefault.__action__ is only called if a user actively passes
        # a variable, there's no way to do the string replacing in the action
        # itself. Instead, we're post-processing them here, but this could be
        # improved.

        names = sorted(x.dest for x in self.parser._actions)
        for dest in names:
            if dest in ("help", "verbose", "quiet"):
                continue
            value = getattr(args, dest)
            if value and isinstance(value, (str, unicode)):
                replacement = value % dict(args._get_kwargs())
                log.debug("% 20s => %s" % (dest, replacement))
                setattr(args, dest, replacement)

        if args.serverdir:
            d = args.serverdir
        else:
            raise Stop(1, 'OMERO server directory required')
        ext = External(d)
        ext.setup_omero_cli()
        DbAdmin(d, args.dbcommand, args, ext)
Пример #3
0
    def __init__(self, sub_parsers):
        super(DbCommand, self).__init__(sub_parsers)

        self.parser = DbParser(self.parser)
        self.parser.add_argument("-n", "--dry-run", action="store_true", help=(
            "Simulation/check mode. In 'upgrade' mode exits with code 2 if an "
            "upgrade is required, 3 if database isn't initialised, 0 if "
            "database is up-to-date."))

        # TODO: Kind of duplicates Upgrade args.sym/args.server
        self.parser.add_argument(
            '--serverdir', help='Root directory of the server')
        self.parser.add_argument(
            "dbcommand",
            choices=['init', 'upgrade', 'dump'],
            help='Initialise or upgrade a database')
        self.parser.add_argument('--dumpfile', help='Database dump file')
Пример #4
0
class DbCommand(Command):
    """
    Administer an OMERO database
    """

    NAME = "db"

    def __init__(self, sub_parsers):
        super(DbCommand, self).__init__(sub_parsers)

        self.parser = DbParser(self.parser)
        self.parser.add_argument("-n", "--dry-run", action="store_true", help=(
            "Simulation/check mode. In 'upgrade' mode exits with code 2 if an "
            "upgrade is required, 3 if database isn't initialised, 0 if "
            "database is up-to-date."))

        # TODO: Kind of duplicates Upgrade args.sym/args.server
        self.parser.add_argument(
            '--serverdir', help='Root directory of the server')
        self.parser.add_argument(
            "dbcommand",
            choices=['init', 'upgrade', 'dump'],
            help='Initialise or upgrade a database')
        self.parser.add_argument('--dumpfile', help='Database dump file')

    def __call__(self, args):
        super(DbCommand, self).__call__(args)
        self.configure_logging(args)

        # Since EnvDefault.__action__ is only called if a user actively passes
        # a variable, there's no way to do the string replacing in the action
        # itself. Instead, we're post-processing them here, but this could be
        # improved.

        names = sorted(x.dest for x in self.parser._actions)
        for dest in names:
            if dest in ("help", "verbose", "quiet"):
                continue
            value = getattr(args, dest)
            if value and isinstance(value, basestring):
                replacement = value % dict(args._get_kwargs())
                log.debug("% 20s => %s" % (dest, replacement))
                setattr(args, dest, replacement)

        if args.serverdir:
            d = args.serverdir
        else:
            raise Stop(1, 'OMERO server directory required')
        ext = External(d)
        ext.setup_omero_cli()
        DbAdmin(d, args.dbcommand, args, ext)
Пример #5
0
    def __init__(self, sub_parsers):
        super(DbCommand, self).__init__(sub_parsers)

        self.parser = DbParser(self.parser)
        self.parser.add_argument("-n", "--dry-run", action="store_true")

        Add = EnvDefault.add
        # TODO: Kind of duplicates Upgrade args.sym/args.server
        Add(self.parser, 'serverdir', 'Root directory of the server')
        self.parser.add_argument(
            "dbcommand",
            choices=['init', 'upgrade'],
            help='Initialise or upgrade a database')
Пример #6
0
    def __init__(self, sub_parsers):
        super(InstallBaseCommand, self).__init__(sub_parsers)

        self.parser.add_argument("-n", "--dry-run", action="store_true")
        self.parser.add_argument("server",
                                 nargs="?",
                                 help="The server directory, or a server-zip, "
                                 "or the url of a server-zip")

        self.parser.add_argument(
            "--prestartfile",
            action="append",
            help="Run these OMERO commands before starting server, "
            "can be repeated")
        self.parser.add_argument(
            "--ignoreconfig",
            action="store_true",
            help="Don't copy the old configuration file when upgrading")

        self.parser = JenkinsParser(self.parser)
        self.parser = DbParser(self.parser)
        self.parser = FileUtilsParser(self.parser)

        Add = EnvDefault.add

        Add(self.parser, "sym", "OMERO-CURRENT")

        self.parser.add_argument("--no-start",
                                 action="store_true",
                                 help="Don't start any omero components")

        self.parser.add_argument("--no-web",
                                 action="store_true",
                                 help="Ignore OMERO.web, don't start or stop")

        self.parser.add_argument("--delete-old",
                                 action="store_true",
                                 help="Delete the old server directory")
        self.parser.add_argument("--keep-old-zip",
                                 action="store_true",
                                 help="Don't delete the old server zip")

        # Record the values of these environment variables in a file
        envvars = "ICE_HOME PATH DYLD_LIBRARY_PATH LD_LIBRARY_PATH PYTHONPATH"
        envvarsfile = os.path.join("%(sym)s", "omero.envvars")
        Add(self.parser, "savevars", envvars)
        Add(self.parser, "savevarsfile", envvarsfile)