def _pre_process_sar(self, resolution: float = None) -> dict:
"""
Pre-process SAR data (geocoding...)
Args:
resolution (float): Resolution
Returns:
dict: Dictionary containing {band: path}
"""
out = {}
# Create target dir (tmp dir)
with tempfile.TemporaryDirectory() as tmp_dir:
# Set command as a list
target_file = os.path.join(tmp_dir, f"{self.condensed_name}")
# Use dimap for speed and security (ie. GeoTiff's broken georef)
pp_target = f"{target_file}"
pp_dim = pp_target + ".dim"
# Pre-process graph
if PP_GRAPH not in os.environ:
sat = "s1" if self.sat_id == Platform.S1.name else "sar"
spt = "grd" if self.sar_prod_type == SarProductType.GDRG else "cplx"
pp_graph = os.path.join(utils.get_data_dir(),
f"{spt}_{sat}_preprocess_default.xml")
else:
pp_graph = os.environ[PP_GRAPH]
if not os.path.isfile(pp_graph) or not pp_graph.endswith(
".xml"):
FileNotFoundError(f"{pp_graph} cannot be found.")
# Command line
if not os.path.isfile(pp_dim):
def_res = float(os.environ.get(SAR_DEF_RES, self.resolution))
res_m = resolution if resolution else def_res
res_deg = res_m / 10.0 * 8.983152841195215e-5 # Approx
cmd_list = snap.get_gpt_cli(
pp_graph,
[
f"-Pfile={strings.to_cmd_string(self._snap_path)}",
f"-Pout={pp_dim}",
f"-Pcrs={self.crs()}",
f"-Pres_m={res_m}",
f"-Pres_deg={res_deg}",
],
display_snap_opt=LOGGER.level == logging.DEBUG,
)
# Pre-process SAR images according to the given graph
LOGGER.debug("Pre-process SAR image")
misc.run_cli(cmd_list)
# Convert DIMAP images to GeoTiff
for pol in self.pol_channels:
# Speckle image
out[sbn.from_value(pol)] = self._write_sar(pp_dim, pol.value)
return out
def test_utils():
root_dir = os.path.abspath(os.path.join(__file__, "..", "..", ".."))
# Root directory
src_dir = os.path.join(root_dir, "eoreader")
data_dir = os.path.join(src_dir, "data")
assert utils.get_root_dir() == root_dir
assert utils.get_src_dir() == src_dir
assert utils.get_data_dir() == data_dir
def _run_s3_gpt_cli(self, out_dim: str, resolution: float = None) -> list:
"""
Construct GPT command line to reproject S3 images and quality flags
Args:
out_dim (str): Out DIMAP name
resolution (float): Resolution
Returns:
list: Processed band name
"""
# Default resolution
def_res = os.environ.get(S3_DEF_RES, self.resolution)
# Construct GPT graph
graph_path = os.path.join(utils.get_data_dir(), "preprocess_s3.xml")
snap_bands = ",".join([
self._get_snap_band_name(band)
for band, band_nb in self.band_names.items() if band_nb
])
if self._instrument_name == S3Instrument.OLCI:
sensor = "OLCI"
fmt = "Sen3"
snap_bands += ",quality_flags"
else:
sensor = "SLSTR_500m"
fmt = "Sen3_SLSTRL1B_500m"
exception_bands = ",".join([
self._get_slstr_quality_flags_name(band)
for band, band_nb in self.band_names.items() if band_nb
])
snap_bands += f",{exception_bands},cloud_an,cloud_in"
# Run GPT graph
cmd_list = snap.get_gpt_cli(
graph_path,
[
f"-Pin={strings.to_cmd_string(self.path)}",
f"-Pbands={snap_bands}",
f"-Psensor={sensor}",
f"-Pformat={fmt}",
f"-Pno_data={self._snap_no_data}",
f"-Pres_m={resolution if resolution else def_res}",
f"-Pout={strings.to_cmd_string(out_dim)}",
],
display_snap_opt=LOGGER.level == logging.DEBUG,
)
LOGGER.debug("Converting %s", self.name)
misc.run_cli(cmd_list)
return snap_bands.split(",")
def _despeckle_sar(self, band: sbn) -> str:
"""
Pre-process SAR data (geocode...)
Args:
band (sbn): Band to despeckle
Returns:
str: Despeckled path
"""
# Create target dir (tmp dir)
with tempfile.TemporaryDirectory() as tmp_dir:
# Out files
target_file = os.path.join(tmp_dir, f"{self.condensed_name}")
dspk_dim = target_file + ".dim"
# Despeckle graph
if DSPK_GRAPH not in os.environ:
dspk_graph = os.path.join(utils.get_data_dir(),
"sar_despeckle_default.xml")
else:
dspk_graph = os.environ[DSPK_GRAPH]
if not os.path.isfile(dspk_graph) or not dspk_graph.endswith(
".xml"):
FileNotFoundError(f"{dspk_graph} cannot be found.")
# Create command line and run it
if not os.path.isfile(dspk_dim):
path = self.get_band_paths([band])[band]
cmd_list = snap.get_gpt_cli(
dspk_graph,
[f"-Pfile={path}", f"-Pout={dspk_dim}"],
display_snap_opt=False,
)
# Pre-process SAR images according to the given graph
LOGGER.debug("Despeckle SAR image")
misc.run_cli(cmd_list)
# Convert DIMAP images to GeoTiff
out = self._write_sar(dspk_dim, band.value, dspk=True)
return out
