def read_vars_from_exofile(filepath,
variables=None,
step=1,
h=1,
elem_blk=1,
elem_num=1):
"""Read the specified variables from the exodus file in filepath
"""
# setup variables
if variables is None:
variables = ["ALL"]
else:
if not isinstance(variables, (list, tuple)):
variables = [variables]
variables = [v.strip() for v in variables]
if "all" in [v.lower() for v in variables]:
variables = ["ALL"]
if not os.path.isfile(filepath):
raise ExoDumpError("{0}: no such file".format(filepath))
exof = ExodusIIReader(filepath)
glob_var_names = exof.glob_var_names
elem_var_names = exof.elem_var_names
if variables[0] != "ALL":
glob_var_names = expand_var_names(glob_var_names, variables)
elem_var_names = expand_var_names(elem_var_names, variables)
bad = [x for x in variables if x is not None]
if bad:
raise ExoDumpError("{0}: variables not in "
"{1}".format(", ".join(bad), filepath))
# retrieve the data from the database
header = ["TIME"]
header.extend([H.upper() for H in glob_var_names])
header.extend([H.upper() for H in elem_var_names])
data = []
for i in myrange(0, exof.num_time_steps, step):
row = [exof.get_time(i)]
glob_vars_vals = exof.get_glob_vars(i, disp=1)
for var in glob_var_names:
try:
row.append(glob_vars_vals[var])
except KeyError:
continue
for var in elem_var_names:
row.append(exof.get_elem_var_time(var, elem_num, elem_blk)[i])
data.append(row)
exof.close()
data = np.array(data)
if len(header) != data.shape[1]:
raise ExoDumpError("inconsistent data")
if h:
return header, data
return data
def loadexo(filepath):
LOG.info("Reading {0}".format(filepath))
exof = ExodusIIReader(filepath)
glob_var_names = exof.glob_var_names
elem_var_names = exof.elem_var_names
data = [exof.get_all_times()]
for glob_var_name in glob_var_names:
data.append(exof.get_glob_var_time(glob_var_name))
for elem_var_name in elem_var_names:
data.append(exof.get_elem_var_time(elem_var_name, 0))
data = np.transpose(np.array(data))
head = ["TIME"] + glob_var_names + elem_var_names
exof.close()
return head, data
def read_vars_from_exofile(filepath, variables=None, step=1, h=1,
elem_blk=1, elem_num=1):
"""Read the specified variables from the exodus file in filepath
"""
# setup variables
if variables is None:
variables = ["ALL"]
else:
if not isinstance(variables, (list, tuple)):
variables = [variables]
variables = [v.strip() for v in variables]
if "all" in [v.lower() for v in variables]:
variables = ["ALL"]
if not os.path.isfile(filepath):
raise ExoDumpError("{0}: no such file".format(filepath))
exof = ExodusIIReader(filepath)
glob_var_names = exof.glob_var_names
elem_var_names = exof.elem_var_names
if variables[0] != "ALL":
glob_var_names = expand_var_names(glob_var_names, variables)
elem_var_names = expand_var_names(elem_var_names, variables)
bad = [x for x in variables if x is not None]
if bad:
raise ExoDumpError("{0}: variables not in "
"{1}".format(", ".join(bad), filepath))
# retrieve the data from the database
header = ["TIME"]
header.extend([H.upper() for H in glob_var_names])
header.extend([H.upper() for H in elem_var_names])
data = []
for i in myrange(0, exof.num_time_steps, step):
row = [exof.get_time(i)]
glob_vars_vals = exof.get_glob_vars(i, disp=1)
for var in glob_var_names:
try: row.append(glob_vars_vals[var])
except KeyError: continue
for var in elem_var_names:
row.append(exof.get_elem_var_time(var, elem_num, elem_blk)[i])
data.append(row)
exof.close()
data = np.array(data)
if len(header) != data.shape[1]:
raise ExoDumpError("inconsistent data")
if h:
return header, data
return data